Baoyu Jing

Zihao Li, Kaifeng Jin, Yuanchen Bei et al.

Time series are often embedded in rich contexts that are essential for holistic modeling. Moreover, real-world practitioners often require end-to-end workflows for analyzing temporal dynamics, where widely studied tasks such as forecasting are only one step in a broader solution loop. While generalist AI agents offer a promising interface for such workflows under complex contexts, they still operate primarily in textual spaces that are not fully aligned with structured temporal signals. In this work, we introduce TimeClaw, an agentic harness framework for time series that equips generalist LLM agents with the time series-native runtime support needed for contextualized temporal reasoning. TimeClaw integrates executable temporal tools for grounded and auditable analysis, experience-driven capability evolution for creating reusable analytical routines, and episodic multimodal memory for retrieving relevant reasoning traces. Together, these components unlock harnessed open-ended temporal reasoning with contextual information. Extensive evaluation on multiple benchmarks covering diverse tasks across energy, finance, weather, traffic, and other real-world domains demonstrates improved performance of TimeClaw. Code is available at https://github.com/iDEA-iSAIL-Lab-UIUC/TimeClaw.

Baoyu Jing, Yuchen Yan, Yada Zhu et al.

Bipartite graphs are powerful data structures to model interactions between two types of nodes, which have been used in a variety of applications, such as recommender systems, information retrieval, and drug discovery. A fundamental challenge for bipartite graphs is how to learn informative node embeddings. Despite the success of recent self-supervised learning methods on bipartite graphs, their objectives are discriminating instance-wise positive and negative node pairs, which could contain cluster-level errors. In this paper, we introduce a novel co-cluster infomax (COIN) framework, which captures the cluster-level information by maximizing the mutual information of co-clusters. Different from previous infomax methods which estimate mutual information by neural networks, COIN could easily calculate mutual information. Besides, COIN is an end-to-end coclustering method which can be trained jointly with other objective functions and optimized via back-propagation. Furthermore, we also provide theoretical analysis for COIN. We theoretically prove that COIN is able to effectively increase the mutual information of node embeddings and COIN is upper-bounded by the prior distributions of nodes. We extensively evaluate the proposed COIN framework on various benchmark datasets and tasks to demonstrate the effectiveness of COIN.

Baoyu Jing, Sanhorn Chen, Lecheng Zheng et al.

Time series data are integral to critical applications across domains such as finance, healthcare, transportation, and environmental science. While recent work has begun to explore multi-task time series question answering (QA), current benchmarks remain limited to forecasting and anomaly detection tasks. We introduce TSAQA, a novel unified benchmark designed to broaden task coverage and evaluate diverse temporal analysis capabilities. TSAQA integrates six diverse tasks under a single framework ranging from conventional analysis, including anomaly detection and classification, to advanced analysis, such as characterization, comparison, data transformation, and temporal relationship analysis. Spanning 210k samples across 13 domains, the dataset employs diverse formats, including true-or-false (TF), multiple-choice (MC), and a novel puzzling (PZ), to comprehensively assess time series analysis. Zero-shot evaluation demonstrates that these tasks are challenging for current Large Language Models (LLMs): the best-performing commercial LLM, Gemini-2.5-Flash, achieves an average score of only 65.08. Although instruction tuning boosts open-source performance: the best-performing open-source model, LLaMA-3.1-8B, shows significant room for improvement, highlighting the complexity of temporal analysis for LLMs.

Baoyu Jing, Si Zhang, Yada Zhu et al.

Time series data appears in a variety of applications such as smart transportation and environmental monitoring. One of the fundamental problems for time series analysis is time series forecasting. Despite the success of recent deep time series forecasting methods, they require sufficient observation of historical values to make accurate forecasting. In other words, the ratio of the output length (or forecasting horizon) to the sum of the input and output lengths should be low enough (e.g., 0.3). As the ratio increases (e.g., to 0.8), the uncertainty for the forecasting accuracy increases significantly. In this paper, we show both theoretically and empirically that the uncertainty could be effectively reduced by retrieving relevant time series as references. In the theoretical analysis, we first quantify the uncertainty and show its connections to the Mean Squared Error (MSE). Then we prove that models with references are easier to learn than models without references since the retrieved references could reduce the uncertainty. To empirically demonstrate the effectiveness of the retrieval based time series forecasting models, we introduce a simple yet effective two-stage method, called ReTime consisting of a relational retrieval and a content synthesis. We also show that ReTime can be easily adapted to the spatial-temporal time series and time series imputation settings. Finally, we evaluate ReTime on real-world datasets to demonstrate its effectiveness.

Shengyu Feng, Baoyu Jing, Yada Zhu et al.

Contrastive learning is an effective unsupervised method in graph representation learning, and the key component of contrastive learning lies in the construction of positive and negative samples. Previous methods usually utilize the proximity of nodes in the graph as the principle. Recently, the data-augmentation-based contrastive learning method has advanced to show great power in the visual domain, and some works extended this method from images to graphs. However, unlike the data augmentation on images, the data augmentation on graphs is far less intuitive and much harder to provide high-quality contrastive samples, which leaves much space for improvement. In this work, by introducing an adversarial graph view for data augmentation, we propose a simple but effective method, Adversarial Graph Contrastive Learning (ARIEL), to extract informative contrastive samples within reasonable constraints. We develop a new technique called information regularization for stable training and use subgraph sampling for scalability. We generalize our method from node-level contrastive learning to the graph level by treating each graph instance as a super-node. ARIEL consistently outperforms the current graph contrastive learning methods for both node-level and graph-level classification tasks on real-world datasets. We further demonstrate that ARIEL is more robust in the face of adversarial attacks.

Baoyu Jing, Yuchen Yan, Kaize Ding et al.

A fundamental challenge of bipartite graph representation learning is how to extract informative node embeddings. Self-Supervised Learning (SSL) is a promising paradigm to address this challenge. Most recent bipartite graph SSL methods are based on contrastive learning which learns embeddings by discriminating positive and negative node pairs. Contrastive learning usually requires a large number of negative node pairs, which could lead to computational burden and semantic errors. In this paper, we introduce a novel synergistic representation learning model (STERLING) to learn node embeddings without negative node pairs. STERLING preserves the unique local and global synergies in bipartite graphs. The local synergies are captured by maximizing the similarity of the inter-type and intra-type positive node pairs, and the global synergies are captured by maximizing the mutual information of co-clusters. Theoretical analysis demonstrates that STERLING could improve the connectivity between different node types in the embedding space. Extensive empirical evaluation on various benchmark datasets and tasks demonstrates the effectiveness of STERLING for extracting node embeddings.

Zihao Li, Lecheng Zheng, Bowen Jin et al.

While great success has been achieved in building vision models with Contrastive Language-Image Pre-training (CLIP) over internet-scale image-text pairs, building transferable Graph Neural Networks (GNNs) with CLIP pipeline is challenging because of the scarcity of labeled data and text supervision, different levels of downstream tasks, and the conceptual gaps between domains. In this work, to address these issues, we propose a multi-modal prompt learning paradigm to effectively adapt pre-trained GNN to downstream tasks and data, given only a few semantically labeled samples, each with extremely weak text supervision. Our new paradigm embeds the graphs directly in the same space as the Large Language Models (LLMs) by learning both graph prompts and text prompts simultaneously. We demonstrate the superior performance of our paradigm in few-shot, multi-task-level, and cross-domain settings. Moreover, we build the first CLIP-style zero-shot classification prototype that can generalize GNNs to unseen classes with extremely weak text supervision. The code is available at https://github.com/Violet24K/Morpher.

Lecheng Zheng, Baoyu Jing, Zihao Li et al.

Graph Self-Supervised Learning (SSL) has emerged as a pivotal area of research in recent years. By engaging in pretext tasks to learn the intricate topological structures and properties of graphs using unlabeled data, these graph SSL models achieve enhanced performance, improved generalization, and heightened robustness. Despite the remarkable achievements of these graph SSL methods, their current implementation poses significant challenges for beginners and practitioners due to the complex nature of graph structures, inconsistent evaluation metrics, and concerns regarding reproducibility hinder further progress in this field. Recognizing the growing interest within the research community, there is an urgent need for a comprehensive, beginner-friendly, and accessible toolkit consisting of the most representative graph SSL algorithms. To address these challenges, we present a Graph SSL toolkit named PyG-SSL, which is built upon PyTorch and is compatible with various deep learning and scientific computing backends. Within the toolkit, we offer a unified framework encompassing dataset loading, hyper-parameter configuration, model training, and comprehensive performance evaluation for diverse downstream tasks. Moreover, we provide beginner-friendly tutorials and the best hyper-parameters of each graph SSL algorithm on different graph datasets, facilitating the reproduction of results. The GitHub repository of the library is https://github.com/iDEA-iSAIL-Lab-UIUC/pyg-ssl.

Kexin Zhang, Baoyu Jing, K. Selçuk Candan et al.

Cross-domain time series imputation is an underexplored data-centric research task that presents significant challenges, particularly when the target domain suffers from high missing rates and domain shifts in temporal dynamics. Existing time series imputation approaches primarily focus on the single-domain setting, which cannot effectively adapt to a new domain with domain shifts. Meanwhile, conventional domain adaptation techniques struggle with data incompleteness, as they typically assume the data from both source and target domains are fully observed to enable adaptation. For the problem of cross-domain time series imputation, missing values introduce high uncertainty that hinders distribution alignment, making existing adaptation strategies ineffective. Specifically, our proposed solution tackles this problem from three perspectives: (i) Data: We introduce a frequency-based time series interpolation strategy that integrates shared spectral components from both domains while retaining domain-specific temporal structures, constructing informative priors for imputation. (ii) Model: We design a diffusion-based imputation model that effectively learns domain-shared representations and captures domain-specific temporal dependencies with dedicated denoising networks. (iii) Algorithm: We further propose a cross-domain consistency alignment strategy that selectively regularizes output-level domain discrepancies, enabling effective knowledge transfer while preserving domain-specific characteristics. Extensive experiments on three real-world datasets demonstrate the superiority of our proposed approach. Our code implementation is available here.

Shuqi Gu, Yongxiang Zhao, Baoyu Jing et al.

Time series forecasting has become increasingly critical in real-world scenarios, where future sequences are influenced not only by historical patterns but also by forthcoming events. In this context, forecasting must dynamically adapt to complex and stochastic future conditions, which introduces fundamental challenges in both forecasting and evaluation. Traditional methods typically rely on historical data or factual future conditions, while overlooking counterfactual scenarios. Furthermore, many existing approaches are restricted to simple structured conditions, limiting their ability to generalize to the real-world complexities. To address these gaps, we introduce the task of counterfactual time series forecasting with textual conditions, enabling more flexible and condition-aware forecasting. We propose a comprehensive evaluation framework that encompasses both factual and counterfactual settings, even in the absence of ground truth time series. Additionally, we present a novel text-attribution mechanism that distinguishes mutable from immutable factors, thereby improving forecast accuracy under sophisticated and stochastic textual conditions. The project page is at https://seqml.github.io/TADiff/

Qi Yu, Zhichen Zeng, Yuchen Yan et al.

Network alignment (NA) aims to identify node correspondence across different networks and serves as a critical cornerstone behind various downstream multi-network learning tasks. Despite growing research in NA, there lacks a comprehensive library that facilitates the systematic development and benchmarking of NA methods. In this work, we introduce PLANETALIGN, a comprehensive Python library for network alignment that features a rich collection of built-in datasets, methods, and evaluation pipelines with easy-to-use APIs. Specifically, PLANETALIGN integrates 18 datasets and 14 NA methods with extensible APIs for easy use and development of NA methods. Our standardized evaluation pipeline encompasses a wide range of metrics, enabling a systematic assessment of the effectiveness, scalability, and robustness of NA methods. Through extensive comparative studies, we reveal practical insights into the strengths and limitations of existing NA methods. We hope that PLANETALIGN can foster a deeper understanding of the NA problem and facilitate the development and benchmarking of more effective, scalable, and robust methods in the future. The source code of PLANETALIGN is available at https://github.com/yq-leo/PlanetAlign.

Shengyu Feng, Baoyu Jing, Yada Zhu et al.

Contrastive learning is an effective unsupervised method in graph representation learning. Recently, the data augmentation based contrastive learning method has been extended from images to graphs. However, most prior works are directly adapted from the models designed for images. Unlike the data augmentation on images, the data augmentation on graphs is far less intuitive and much harder to provide high-quality contrastive samples, which are the key to the performance of contrastive learning models. This leaves much space for improvement over the existing graph contrastive learning frameworks. In this work, by introducing an adversarial graph view and an information regularizer, we propose a simple but effective method, Adversarial Graph Contrastive Learning (ARIEL), to extract informative contrastive samples within a reasonable constraint. It consistently outperforms the current graph contrastive learning methods in the node classification task over various real-world datasets and further improves the robustness of graph contrastive learning. The code is at https://github.com/Shengyu-Feng/ARIEL.

Lecheng Zheng, Baoyu Jing, Zihao Li et al.

In the era of big data and Artificial Intelligence, an emerging paradigm is to utilize contrastive self-supervised learning to model large-scale heterogeneous data. Many existing foundation models benefit from the generalization capability of contrastive self-supervised learning by learning compact and high-quality representations without relying on any label information. Amidst the explosive advancements in foundation models across multiple domains, including natural language processing and computer vision, a thorough survey on heterogeneous contrastive learning for the foundation model is urgently needed. In response, this survey critically evaluates the current landscape of heterogeneous contrastive learning for foundation models, highlighting the open challenges and future trends of contrastive learning. In particular, we first present how the recent advanced contrastive learning-based methods deal with view heterogeneity and how contrastive learning is applied to train and fine-tune the multi-view foundation models. Then, we move to contrastive learning methods for task heterogeneity, including pretraining tasks and downstream tasks, and show how different tasks are combined with contrastive learning loss for different purposes. Finally, we conclude this survey by discussing the open challenges and shedding light on the future directions of contrastive learning.

Baoyu Jing, Dawei Zhou, Kan Ren et al.

Spatiotemporal time series are usually collected via monitoring sensors placed at different locations, which usually contain missing values due to various failures, such as mechanical damages and Internet outages. Imputing the missing values is crucial for analyzing time series. When recovering a specific data point, most existing methods consider all the information relevant to that point regardless of the cause-and-effect relationship. During data collection, it is inevitable that some unknown confounders are included, e.g., background noise in time series and non-causal shortcut edges in the constructed sensor network. These confounders could open backdoor paths and establish non-causal correlations between the input and output. Over-exploiting these non-causal correlations could cause overfitting. In this paper, we first revisit spatiotemporal time series imputation from a causal perspective and show how to block the confounders via the frontdoor adjustment. Based on the results of frontdoor adjustment, we introduce a novel Causality-Aware Spatiotemporal Graph Neural Network (Casper), which contains a novel Prompt Based Decoder (PBD) and a Spatiotemporal Causal Attention (SCA). PBD could reduce the impact of confounders and SCA could discover the sparse causal relationships among embeddings. Theoretical analysis reveals that SCA discovers causal relationships based on the values of gradients. We evaluate Casper on three real-world datasets, and the experimental results show that Casper could outperform the baselines and could effectively discover causal relationships.

Zixuan Wang, Yu Sun, Hongwei Wang et al.

Short video platforms are evolving rapidly, making the identification of inappropriate content increasingly critical. Existing approaches typically train separate and small classification models for each type of issue, which requires extensive human-labeled data and lacks cross-issue generalization. We propose a reasoning-enhanced multimodal large language model (MLLM) pretraining paradigm for unified inappropriate content detection. To address the distribution gap between short video content and the original pretraining data of MLLMs, as well as the complex issue definitions, we introduce three targeted pretraining tasks: (1) \textit{Caption}, to enhance the MLLM's perception of video details; (2) \textit{Visual Question Answering (VQA)}, to deepen the MLLM's understanding of issue definitions and annotation guidelines; (3) \textit{Chain-of-Thought (CoT)}, to enhance the MLLM's reasoning capability. Experimental results show that our pretraining approach significantly improves the MLLM's performance in both zero-shot and supervised fine-tuning (SFT) settings. In addition, our pretrained model demonstrates strong generalization capabilities to emergent, previously unseen issues.

Baoyu Jing, Yansen Wang, Guoxin Sui et al.

In recent years, Contrastive Learning (CL) has become a predominant representation learning paradigm for time series. Most existing methods manually build specific CL Strategies (CLS) by human heuristics for certain datasets and tasks. However, manually developing CLS usually requires excessive prior knowledge about the data, and massive experiments to determine the detailed CL configurations. In this paper, we present an Automated Machine Learning (AutoML) practice at Microsoft, which automatically learns CLS for time series datasets and tasks, namely Automated Contrastive Learning (AutoCL). We first construct a principled search space of size over $3\times10^{12}$, covering data augmentation, embedding transformation, contrastive pair construction, and contrastive losses. Further, we introduce an efficient reinforcement learning algorithm, which optimizes CLS from the performance on the validation tasks, to obtain effective CLS within the space. Experimental results on various real-world datasets demonstrate that AutoCL could automatically find the suitable CLS for the given dataset and task. From the candidate CLS found by AutoCL on several public datasets/tasks, we compose a transferable Generally Good Strategy (GGS), which has a strong performance for other datasets. We also provide empirical analysis as a guide for the future design of CLS.

Haohui Wang, Baoyu Jing, Kaize Ding et al.

In the context of long-tail classification on graphs, the vast majority of existing work primarily revolves around the development of model debiasing strategies, intending to mitigate class imbalances and enhance the overall performance. Despite the notable success, there is very limited literature that provides a theoretical tool for characterizing the behaviors of long-tail classes in graphs and gaining insight into generalization performance in real-world scenarios. To bridge this gap, we propose a generalization bound for long-tail classification on graphs by formulating the problem in the fashion of multi-task learning, i.e., each task corresponds to the prediction of one particular class. Our theoretical results show that the generalization performance of long-tail classification is dominated by the overall loss range and the task complexity. Building upon the theoretical findings, we propose a novel generic framework HierTail for long-tail classification on graphs. In particular, we start with a hierarchical task grouping module that allows us to assign related tasks into hypertasks and thus control the complexity of the task space; then, we further design a balanced contrastive learning module to adaptively balance the gradients of both head and tail classes to control the loss range across all tasks in a unified fashion. Extensive experiments demonstrate the effectiveness of HierTail in characterizing long-tail classes on real graphs, which achieves up to 12.9% improvement over the leading baseline method in accuracy.

Bolian Li, Baoyu Jing, Hanghang Tong

Graph representation learning is crucial for many real-world applications (e.g. social relation analysis). A fundamental problem for graph representation learning is how to effectively learn representations without human labeling, which is usually costly and time-consuming. Graph contrastive learning (GCL) addresses this problem by pulling the positive node pairs (or similar nodes) closer while pushing the negative node pairs (or dissimilar nodes) apart in the representation space. Despite the success of the existing GCL methods, they primarily sample node pairs based on the node-level proximity yet the community structures have rarely been taken into consideration. As a result, two nodes from the same community might be sampled as a negative pair. We argue that the community information should be considered to identify node pairs in the same communities, where the nodes insides are semantically similar. To address this issue, we propose a novel Graph Communal Contrastive Learning (gCooL) framework to jointly learn the community partition and learn node representations in an end-to-end fashion. Specifically, the proposed gCooL consists of two components: a Dense Community Aggregation (DeCA) algorithm for community detection and a Reweighted Self-supervised Cross-contrastive (ReSC) training scheme to utilize the community information. Additionally, the real-world graphs are complex and often consist of multiple views. In this paper, we demonstrate that the proposed gCooL can also be naturally adapted to multiplex graphs. Finally, we comprehensively evaluate the proposed gCooL on a variety of real-world graphs. The experimental results show that the gCooL outperforms the state-of-the-art methods.

Baoyu Jing, Shengyu Feng, Yuejia Xiang et al.

Graphs are powerful representations for relations among objects, which have attracted plenty of attention. A fundamental challenge for graph learning is how to train an effective Graph Neural Network (GNN) encoder without labels, which are expensive and time consuming to obtain. Contrastive Learning (CL) is one of the most popular paradigms to address this challenge, which trains GNNs by discriminating positive and negative node pairs. Despite the success of recent CL methods, there are still two under-explored problems. First, how to reduce the semantic error introduced by random topology based data augmentations. Traditional CL defines positive and negative node pairs via the node-level topological proximity, which is solely based on the graph topology regardless of the semantic information of node attributes, and thus some semantically similar nodes could be wrongly treated as negative pairs. Second, how to effectively model the multiplexity of the real-world graphs, where nodes are connected by various relations and each relation could form a homogeneous graph layer. To solve these problems, we propose a novel multiplex heterogeneous graph prototypical contrastive leaning (X-GOAL) framework to extract node embeddings. X-GOAL is comprised of two components: the GOAL framework, which learns node embeddings for each homogeneous graph layer, and an alignment regularization, which jointly models different layers by aligning layer-specific node embeddings. Specifically, the GOAL framework captures the node-level information by a succinct graph transformation technique, and captures the cluster-level information by pulling nodes within the same semantic cluster closer in the embedding space. The alignment regularization aligns embeddings across layers at both node and cluster levels. We evaluate X-GOAL on various real-world datasets and downstream tasks to demonstrate its effectiveness.

Baoyu Jing, Zeyu You, Tao Yang et al.

Extractive text summarization aims at extracting the most representative sentences from a given document as its summary. To extract a good summary from a long text document, sentence embedding plays an important role. Recent studies have leveraged graph neural networks to capture the inter-sentential relationship (e.g., the discourse graph) to learn contextual sentence embedding. However, those approaches neither consider multiple types of inter-sentential relationships (e.g., semantic similarity & natural connection), nor model intra-sentential relationships (e.g, semantic & syntactic relationship among words). To address these problems, we propose a novel Multiplex Graph Convolutional Network (Multi-GCN) to jointly model different types of relationships among sentences and words. Based on Multi-GCN, we propose a Multiplex Graph Summarization (Multi-GraS) model for extractive text summarization. Finally, we evaluate the proposed models on the CNN/DailyMail benchmark dataset to demonstrate the effectiveness of our method.

Baoyu Jing, Chanyoung Park, Hanghang Tong

Networks have been widely used to represent the relations between objects such as academic networks and social networks, and learning embedding for networks has thus garnered plenty of research attention. Self-supervised network representation learning aims at extracting node embedding without external supervision. Recently, maximizing the mutual information between the local node embedding and the global summary (e.g. Deep Graph Infomax, or DGI for short) has shown promising results on many downstream tasks such as node classification. However, there are two major limitations of DGI. Firstly, DGI merely considers the extrinsic supervision signal (i.e., the mutual information between node embedding and global summary) while ignores the intrinsic signal (i.e., the mutual dependence between node embedding and node attributes). Secondly, nodes in a real-world network are usually connected by multiple edges with different relations, while DGI does not fully explore the various relations among nodes. To address the above-mentioned problems, we propose a novel framework, called High-order Deep Multiplex Infomax (HDMI), for learning node embedding on multiplex networks in a self-supervised way. To be more specific, we first design a joint supervision signal containing both extrinsic and intrinsic mutual information by high-order mutual information, and we propose a High-order Deep Infomax (HDI) to optimize the proposed supervision signal. Then we propose an attention based fusion module to combine node embedding from different layers of the multiplex network. Finally, we evaluate the proposed HDMI on various downstream tasks such as unsupervised clustering and supervised classification. The experimental results show that HDMI achieves state-of-the-art performance on these tasks.

Baoyu Jing, Hanghang Tong, Yada Zhu

Co-evolving time series appears in a multitude of applications such as environmental monitoring, financial analysis, and smart transportation. This paper aims to address the following challenges, including (C1) how to incorporate explicit relationship networks of the time series; (C2) how to model the implicit relationship of the temporal dynamics. We propose a novel model called Network of Tensor Time Series, which is comprised of two modules, including Tensor Graph Convolutional Network (TGCN) and Tensor Recurrent Neural Network (TRNN). TGCN tackles the first challenge by generalizing Graph Convolutional Network (GCN) for flat graphs to tensor graphs, which captures the synergy between multiple graphs associated with the tensors. TRNN leverages tensor decomposition to model the implicit relationships among co-evolving time series. The experimental results on five real-world datasets demonstrate the efficacy of the proposed method.

Jieli Zhou, Baoyu Jing, Zeya Wang

Due to the shortage of COVID-19 viral testing kits and the long waiting time, radiology imaging is used to complement the screening process and triage patients into different risk levels. Deep learning based methods have taken an active role in automatically detecting COVID-19 disease in chest x-ray images, as witnessed in many recent works in early 2020. Most of these works first train a Convolutional Neural Network (CNN) on an existing large-scale chest x-ray image dataset and then fine-tune it with a COVID-19 dataset at a much smaller scale. However, direct transfer across datasets from different domains may lead to poor performance for CNN due to two issues, the large domain shift present in the biomedical imaging datasets and the extremely small scale of the COVID-19 chest x-ray dataset. In an attempt to address these two important issues, we formulate the problem of COVID-19 chest x-ray image classification in a semi-supervised open set domain adaptation setting and propose a novel domain adaptation method, Semi-supervised Open set Domain Adversarial network (SODA). SODA is able to align the data distributions across different domains in a general domain space and also in a common subspace of source and target data. In our experiments, SODA achieves a leading classification performance compared with recent state-of-the-art models in separating COVID-19 with common pneumonia. We also present initial results showing that SODA can produce better pathology localizations in the chest x-rays.

Baoyu Jing, Zeya Wang, Eric Xing

Chest X-Ray (CXR) images are commonly used for clinical screening and diagnosis. Automatically writing reports for these images can considerably lighten the workload of radiologists for summarizing descriptive findings and conclusive impressions. The complex structures between and within sections of the reports pose a great challenge to the automatic report generation. Specifically, the section Impression is a diagnostic summarization over the section Findings; and the appearance of normality dominates each section over that of abnormality. Existing studies rarely explore and consider this fundamental structure information. In this work, we propose a novel framework that exploits the structure information between and within report sections for generating CXR imaging reports. First, we propose a two-stage strategy that explicitly models the relationship between Findings and Impression. Second, we design a novel cooperative multi-agent system that implicitly captures the imbalanced distribution between abnormality and normality. Experiments on two CXR report datasets show that our method achieves state-of-the-art performance in terms of various evaluation metrics. Our results expose that the proposed approach is able to generate high-quality medical reports through integrating the structure information.

Zeya Wang, Baoyu Jing, Yang Ni et al.

Adversarial training is a useful approach to promote the learning of transferable representations across the source and target domains, which has been widely applied for domain adaptation (DA) tasks based on deep neural networks. Until very recently, existing adversarial domain adaptation (ADA) methods ignore the useful information from the label space, which is an important factor accountable for the complicated data distributions associated with different semantic classes. Especially, the inter-class semantic relationships have been rarely considered and discussed in the current work of transfer learning. In this paper, we propose a novel relationship-aware adversarial domain adaptation (RADA) algorithm, which first utilizes a single multi-class domain discriminator to enforce the learning of inter-class dependency structure during domain-adversarial training and then aligns this structure with the inter-class dependencies that are characterized from training the label predictor on source domain. Specifically, we impose a regularization term to penalize the structure discrepancy between the inter-class dependencies respectively estimated from domain discriminator and label predictor. Through this alignment, our proposed method makes the adversarial domain adaptation aware of the class relationships. Empirical studies show that the incorporation of class relationships significantly improves the performance on benchmark datasets.

Baoyu Jing, Chenwei Lu, Deqing Wang et al.

Cross-domain text classification aims at building a classifier for a target domain which leverages data from both source and target domain. One promising idea is to minimize the feature distribution differences of the two domains. Most existing studies explicitly minimize such differences by an exact alignment mechanism (aligning features by one-to-one feature alignment, projection matrix etc.). Such exact alignment, however, will restrict models' learning ability and will further impair models' performance on classification tasks when the semantic distributions of different domains are very different. To address this problem, we propose a novel group alignment which aligns the semantics at group level. In addition, to help the model learn better semantic groups and semantics within these groups, we also propose a partial supervision for model's learning in source domain. To this end, we embed the group alignment and a partial supervision into a cross-domain topic model, and propose a Cross-Domain Labeled LDA (CDL-LDA). On the standard 20Newsgroup and Reuters dataset, extensive quantitative (classification, perplexity etc.) and qualitative (topic detection) experiments are conducted to show the effectiveness of the proposed group alignment and partial supervision.

Baoyu Jing, Pengtao Xie, Eric Xing

Medical imaging is widely used in clinical practice for diagnosis and treatment. Report-writing can be error-prone for unexperienced physicians, and time- consuming and tedious for experienced physicians. To address these issues, we study the automatic generation of medical imaging reports. This task presents several challenges. First, a complete report contains multiple heterogeneous forms of information, including findings and tags. Second, abnormal regions in medical images are difficult to identify. Third, the re- ports are typically long, containing multiple sentences. To cope with these challenges, we (1) build a multi-task learning framework which jointly performs the pre- diction of tags and the generation of para- graphs, (2) propose a co-attention mechanism to localize regions containing abnormalities and generate narrations for them, (3) develop a hierarchical LSTM model to generate long paragraphs. We demonstrate the effectiveness of the proposed methods on two publicly available datasets.