CVSep 17, 2023Code
Neural Gradient Learning and Optimization for Oriented Point Normal EstimationQing Li, Huifang Feng, Kanle Shi et al. · tsinghua
We propose Neural Gradient Learning (NGL), a deep learning approach to learn gradient vectors with consistent orientation from 3D point clouds for normal estimation. It has excellent gradient approximation properties for the underlying geometry of the data. We utilize a simple neural network to parameterize the objective function to produce gradients at points using a global implicit representation. However, the derived gradients usually drift away from the ground-truth oriented normals due to the lack of local detail descriptions. Therefore, we introduce Gradient Vector Optimization (GVO) to learn an angular distance field based on local plane geometry to refine the coarse gradient vectors. Finally, we formulate our method with a two-phase pipeline of coarse estimation followed by refinement. Moreover, we integrate two weighting functions, i.e., anisotropic kernel and inlier score, into the optimization to improve the robust and detail-preserving performance. Our method efficiently conducts global gradient approximation while achieving better accuracy and generalization ability of local feature description. This leads to a state-of-the-art normal estimator that is robust to noise, outliers and point density variations. Extensive evaluations show that our method outperforms previous works in both unoriented and oriented normal estimation on widely used benchmarks. The source code and pre-trained models are available at https://github.com/LeoQLi/NGLO.
CVAug 18, 2023Code
Retro-FPN: Retrospective Feature Pyramid Network for Point Cloud Semantic SegmentationPeng Xiang, Xin Wen, Yu-Shen Liu et al. · tsinghua
Learning per-point semantic features from the hierarchical feature pyramid is essential for point cloud semantic segmentation. However, most previous methods suffered from ambiguous region features or failed to refine per-point features effectively, which leads to information loss and ambiguous semantic identification. To resolve this, we propose Retro-FPN to model the per-point feature prediction as an explicit and retrospective refining process, which goes through all the pyramid layers to extract semantic features explicitly for each point. Its key novelty is a retro-transformer for summarizing semantic contexts from the previous layer and accordingly refining the features in the current stage. In this way, the categorization of each point is conditioned on its local semantic pattern. Specifically, the retro-transformer consists of a local cross-attention block and a semantic gate unit. The cross-attention serves to summarize the semantic pattern retrospectively from the previous layer. And the gate unit carefully incorporates the summarized contexts and refines the current semantic features. Retro-FPN is a pluggable neural network that applies to hierarchical decoders. By integrating Retro-FPN with three representative backbones, including both point-based and voxel-based methods, we show that Retro-FPN can significantly improve performance over state-of-the-art backbones. Comprehensive experiments on widely used benchmarks can justify the effectiveness of our design. The source is available at https://github.com/AllenXiangX/Retro-FPN
CVNov 1, 2023Code
NeuralGF: Unsupervised Point Normal Estimation by Learning Neural Gradient FunctionQing Li, Huifang Feng, Kanle Shi et al.
Normal estimation for 3D point clouds is a fundamental task in 3D geometry processing. The state-of-the-art methods rely on priors of fitting local surfaces learned from normal supervision. However, normal supervision in benchmarks comes from synthetic shapes and is usually not available from real scans, thereby limiting the learned priors of these methods. In addition, normal orientation consistency across shapes remains difficult to achieve without a separate post-processing procedure. To resolve these issues, we propose a novel method for estimating oriented normals directly from point clouds without using ground truth normals as supervision. We achieve this by introducing a new paradigm for learning neural gradient functions, which encourages the neural network to fit the input point clouds and yield unit-norm gradients at the points. Specifically, we introduce loss functions to facilitate query points to iteratively reach the moving targets and aggregate onto the approximated surface, thereby learning a global surface representation of the data. Meanwhile, we incorporate gradients into the surface approximation to measure the minimum signed deviation of queries, resulting in a consistent gradient field associated with the surface. These techniques lead to our deep unsupervised oriented normal estimator that is robust to noise, outliers and density variations. Our excellent results on widely used benchmarks demonstrate that our method can learn more accurate normals for both unoriented and oriented normal estimation tasks than the latest methods. The source code and pre-trained model are publicly available at https://github.com/LeoQLi/NeuralGF.
CVOct 13, 2022
HSurf-Net: Normal Estimation for 3D Point Clouds by Learning Hyper SurfacesQing Li, Yu-Shen Liu, Jin-San Cheng et al. · tsinghua
We propose a novel normal estimation method called HSurf-Net, which can accurately predict normals from point clouds with noise and density variations. Previous methods focus on learning point weights to fit neighborhoods into a geometric surface approximated by a polynomial function with a predefined order, based on which normals are estimated. However, fitting surfaces explicitly from raw point clouds suffers from overfitting or underfitting issues caused by inappropriate polynomial orders and outliers, which significantly limits the performance of existing methods. To address these issues, we introduce hyper surface fitting to implicitly learn hyper surfaces, which are represented by multi-layer perceptron (MLP) layers that take point features as input and output surface patterns in a high dimensional feature space. We introduce a novel space transformation module, which consists of a sequence of local aggregation layers and global shift layers, to learn an optimal feature space, and a relative position encoding module to effectively convert point clouds into the learned feature space. Our model learns hyper surfaces from the noise-less features and directly predicts normal vectors. We jointly optimize the MLP weights and module parameters in a data-driven manner to make the model adaptively find the most suitable surface pattern for various points. Experimental results show that our HSurf-Net achieves the state-of-the-art performance on the synthetic shape dataset, the real-world indoor and outdoor scene datasets. The code, data and pretrained models are publicly available.
CVJul 11, 2022Code
SHREC'22 Track: Sketch-Based 3D Shape Retrieval in the WildJie Qin, Shuaihang Yuan, Jiaxin Chen et al.
Sketch-based 3D shape retrieval (SBSR) is an important yet challenging task, which has drawn more and more attention in recent years. Existing approaches address the problem in a restricted setting, without appropriately simulating real application scenarios. To mimic the realistic setting, in this track, we adopt large-scale sketches drawn by amateurs of different levels of drawing skills, as well as a variety of 3D shapes including not only CAD models but also models scanned from real objects. We define two SBSR tasks and construct two benchmarks consisting of more than 46,000 CAD models, 1,700 realistic models, and 145,000 sketches in total. Four teams participated in this track and submitted 15 runs for the two tasks, evaluated by 7 commonly-adopted metrics. We hope that, the benchmarks, the comparative results, and the open-sourced evaluation code will foster future research in this direction among the 3D object retrieval community.
CVOct 6, 2022
CAP-UDF: Learning Unsigned Distance Functions Progressively from Raw Point Clouds with Consistency-Aware Field OptimizationJunsheng Zhou, Baorui Ma, Shujuan Li et al. · tsinghua
Surface reconstruction for point clouds is an important task in 3D computer vision. Most of the latest methods resolve this problem by learning signed distance functions from point clouds, which are limited to reconstructing closed surfaces. Some other methods tried to represent open surfaces using unsigned distance functions (UDF) which are learned from ground truth distances. However, the learned UDF is hard to provide smooth distance fields due to the discontinuous character of point clouds. In this paper, we propose CAP-UDF, a novel method to learn consistency-aware UDF from raw point clouds. We achieve this by learning to move queries onto the surface with a field consistency constraint, where we also enable to progressively estimate a more accurate surface. Specifically, we train a neural network to gradually infer the relationship between queries and the approximated surface by searching for the moving target of queries in a dynamic way. Meanwhile, we introduce a polygonization algorithm to extract surfaces using the gradients of the learned UDF. We conduct comprehensive experiments in surface reconstruction for point clouds, real scans or depth maps, and further explore our performance in unsupervised point normal estimation, which demonstrate non-trivial improvements of CAP-UDF over the state-of-the-art methods.
CVMar 26, 2022
3D-OAE: Occlusion Auto-Encoders for Self-Supervised Learning on Point CloudsJunsheng Zhou, Xin Wen, Baorui Ma et al. · tsinghua
The manual annotation for large-scale point clouds is still tedious and unavailable for many harsh real-world tasks. Self-supervised learning, which is used on raw and unlabeled data to pre-train deep neural networks, is a promising approach to address this issue. Existing works usually take the common aid from auto-encoders to establish the self-supervision by the self-reconstruction schema. However, the previous auto-encoders merely focus on the global shapes and do not distinguish the local and global geometric features apart. To address this problem, we present a novel and efficient self-supervised point cloud representation learning framework, named 3D Occlusion Auto-Encoder (3D-OAE), to facilitate the detailed supervision inherited in local regions and global shapes. We propose to randomly occlude some local patches of point clouds and establish the supervision via inpainting the occluded patches using the remaining ones. Specifically, we design an asymmetrical encoder-decoder architecture based on standard Transformer, where the encoder operates only on the visible subset of patches to learn local patterns, and a lightweight decoder is designed to leverage these visible patterns to infer the missing geometries via self-attention. We find that occluding a very high proportion of the input point cloud (e.g. 75%) will still yield a nontrivial self-supervisory performance, which enables us to achieve 3-4 times faster during training but also improve accuracy. Experimental results show that our approach outperforms the state-of-the-art on a diverse range of downstream discriminative and generative tasks.
CVSep 29, 2024Code
Tracking Everything in Robotic-Assisted SurgeryBohan Zhan, Wang Zhao, Yi Fang et al.
Accurate tracking of tissues and instruments in videos is crucial for Robotic-Assisted Minimally Invasive Surgery (RAMIS), as it enables the robot to comprehend the surgical scene with precise locations and interactions of tissues and tools. Traditional keypoint-based sparse tracking is limited by featured points, while flow-based dense two-view matching suffers from long-term drifts. Recently, the Tracking Any Point (TAP) algorithm was proposed to overcome these limitations and achieve dense accurate long-term tracking. However, its efficacy in surgical scenarios remains untested, largely due to the lack of a comprehensive surgical tracking dataset for evaluation. To address this gap, we introduce a new annotated surgical tracking dataset for benchmarking tracking methods for surgical scenarios, comprising real-world surgical videos with complex tissue and instrument motions. We extensively evaluate state-of-the-art (SOTA) TAP-based algorithms on this dataset and reveal their limitations in challenging surgical scenarios, including fast instrument motion, severe occlusions, and motion blur, etc. Furthermore, we propose a new tracking method, namely SurgMotion, to solve the challenges and further improve the tracking performance. Our proposed method outperforms most TAP-based algorithms in surgical instruments tracking, and especially demonstrates significant improvements over baselines in challenging medical videos. Our code and dataset are available at https://github.com/zhanbh1019/SurgicalMotion.
CVJul 6, 2022
Perceptual Quality Assessment of Omnidirectional ImagesHuiyu Duan, Guangtao Zhai, Xiongkuo Min et al.
Omnidirectional images and videos can provide immersive experience of real-world scenes in Virtual Reality (VR) environment. We present a perceptual omnidirectional image quality assessment (IQA) study in this paper since it is extremely important to provide a good quality of experience under the VR environment. We first establish an omnidirectional IQA (OIQA) database, which includes 16 source images and 320 distorted images degraded by 4 commonly encountered distortion types, namely JPEG compression, JPEG2000 compression, Gaussian blur and Gaussian noise. Then a subjective quality evaluation study is conducted on the OIQA database in the VR environment. Considering that humans can only see a part of the scene at one movement in the VR environment, visual attention becomes extremely important. Thus we also track head and eye movement data during the quality rating experiments. The original and distorted omnidirectional images, subjective quality ratings, and the head and eye movement data together constitute the OIQA database. State-of-the-art full-reference (FR) IQA measures are tested on the OIQA database, and some new observations different from traditional IQA are made.
LGMay 27
BioArc: Discovering Optimal Neural Architectures for Biological Foundation ModelsYi Fang, Haoran Xu, Jiaxin Han et al.
Foundation models have revolutionized various fields such as natural language processing (NLP) and computer vision (CV). While efforts have been made to transfer the success of the foundation models in general AI domains to biology, existing works focus on directly adopting the existing foundation model architectures from general machine learning domains without a systematic design considering the unique physicochemical and structural properties of each biological data modality. This leads to suboptimal performance, as these repurposed architectures struggle to capture the long-range dependencies, sparse information, and complex underlying ``grammars'' inherent to biological data. To address this gap, we introduce BioArc, a novel framework designed to move beyond intuition-driven architecture design towards principled, automated architecture discovery for biological foundation models. Leveraging Neural Architecture Search (NAS), BioArc systematically explores a vast architecture design space, evaluating architectures across multiple biological modalities while rigorously analyzing the interplay between architecture, tokenization, and training strategies. This large-scale analysis identifies novel, high-performance architectures, allowing us to distill a set of empirical design principles to guide future model development. Furthermore, to make the best of this set of discovered principled architectures, we propose and compare several architecture prediction methods that effectively and efficiently predict optimal architectures for new biological tasks. Overall, our work provides a foundational resource and a principled methodology to guide the creation of the next generation of task-specific and foundation models for biology.
CLAug 27, 2024
Large Language Models for Disease Diagnosis: A Scoping ReviewShuang Zhou, Zidu Xu, Mian Zhang et al.
Automatic disease diagnosis has become increasingly valuable in clinical practice. The advent of large language models (LLMs) has catalyzed a paradigm shift in artificial intelligence, with growing evidence supporting the efficacy of LLMs in diagnostic tasks. Despite the increasing attention in this field, a holistic view is still lacking. Many critical aspects remain unclear, such as the diseases and clinical data to which LLMs have been applied, the LLM techniques employed, and the evaluation methods used. In this article, we perform a comprehensive review of LLM-based methods for disease diagnosis. Our review examines the existing literature across various dimensions, including disease types and associated clinical specialties, clinical data, LLM techniques, and evaluation methods. Additionally, we offer recommendations for applying and evaluating LLMs for diagnostic tasks. Furthermore, we assess the limitations of current research and discuss future directions. To our knowledge, this is the first comprehensive review for LLM-based disease diagnosis.
CLSep 29, 2024Code
Does RAG Introduce Unfairness in LLMs? Evaluating Fairness in Retrieval-Augmented Generation SystemsXuyang Wu, Shuowei Li, Hsin-Tai Wu et al.
Retrieval-Augmented Generation (RAG) has recently gained significant attention for its enhanced ability to integrate external knowledge sources into open-domain question answering (QA) tasks. However, it remains unclear how these models address fairness concerns, particularly with respect to sensitive attributes such as gender, geographic location, and other demographic factors. First, as language models evolve to prioritize utility, like improving exact match accuracy, fairness considerations may have been largely overlooked. Second, the complex, multi-component architecture of RAG methods poses challenges in identifying and mitigating biases, as each component is optimized for distinct objectives. In this paper, we aim to empirically evaluate fairness in several RAG methods. We propose a fairness evaluation framework tailored to RAG, using scenario-based questions and analyzing disparities across demographic attributes. Our experimental results indicate that, despite recent advances in utility-driven optimization, fairness issues persist in both the retrieval and generation stages. These findings underscore the need for targeted interventions to address fairness concerns throughout the RAG pipeline. The dataset and code used in this study are publicly available at this GitHub Repository https://github.com/elviswxy/RAG_fairness .
LGMar 5, 2022
Deep Partial Multiplex Network EmbeddingQifan Wang, Yi Fang, Anirudh Ravula et al.
Network embedding is an effective technique to learn the low-dimensional representations of nodes in networks. Real-world networks are usually with multiplex or having multi-view representations from different relations. Recently, there has been increasing interest in network embedding on multiplex data. However, most existing multiplex approaches assume that the data is complete in all views. But in real applications, it is often the case that each view suffers from the missing of some data and therefore results in partial multiplex data. In this paper, we present a novel Deep Partial Multiplex Network Embedding approach to deal with incomplete data. In particular, the network embeddings are learned by simultaneously minimizing the deep reconstruction loss with the autoencoder neural network, enforcing the data consistency across views via common latent subspace learning, and preserving the data topological structure within the same network through graph Laplacian. We further prove the orthogonal invariant property of the learned embeddings and connect our approach with the binary embedding techniques. Experiments on four multiplex benchmarks demonstrate the superior performance of the proposed approach over several state-of-the-art methods on node classification, link prediction and clustering tasks.
CVOct 3, 2023
FairVision: Equitable Deep Learning for Eye Disease Screening via Fair Identity ScalingYan Luo, Muhammad Osama Khan, Yu Tian et al.
Equity in AI for healthcare is crucial due to its direct impact on human well-being. Despite advancements in 2D medical imaging fairness, the fairness of 3D models remains underexplored, hindered by the small sizes of 3D fairness datasets. Since 3D imaging surpasses 2D imaging in SOTA clinical care, it is critical to understand the fairness of these 3D models. To address this research gap, we conduct the first comprehensive study on the fairness of 3D medical imaging models across multiple protected attributes. Our investigation spans both 2D and 3D models and evaluates fairness across five architectures on three common eye diseases, revealing significant biases across race, gender, and ethnicity. To alleviate these biases, we propose a novel fair identity scaling (FIS) method that improves both overall performance and fairness, outperforming various SOTA fairness methods. Moreover, we release Harvard-FairVision, the first large-scale medical fairness dataset with 30,000 subjects featuring both 2D and 3D imaging data and six demographic identity attributes. Harvard-FairVision provides labels for three major eye disorders affecting about 380 million people worldwide, serving as a valuable resource for both 2D and 3D fairness learning. Our code and dataset are publicly accessible at \url{https://ophai.hms.harvard.edu/datasets/harvard-fairvision30k}.
CVSep 17, 2022
Understanding the Impact of Image Quality and Distance of Objects to Object Detection PerformanceYu Hao, Haoyang Pei, Yixuan Lyu et al.
Deep learning has made great strides for object detection in images. The detection accuracy and computational cost of object detection depend on the spatial resolution of an image, which may be constrained by both the camera and storage considerations. Compression is often achieved by reducing either spatial or amplitude resolution or, at times, both, both of which have well-known effects on performance. Detection accuracy also depends on the distance of the object of interest from the camera. Our work examines the impact of spatial and amplitude resolution, as well as object distance, on object detection accuracy and computational cost. We develop a resolution-adaptive variant of YOLOv5 (RA-YOLO), which varies the number of scales in the feature pyramid and detection head based on the spatial resolution of the input image. To train and evaluate this new method, we created a dataset of images with diverse spatial and amplitude resolutions by combining images from the TJU and Eurocity datasets and generating different resolutions by applying spatial resizing and compression. We first show that RA-YOLO achieves a good trade-off between detection accuracy and inference time over a large range of spatial resolutions. We then evaluate the impact of spatial and amplitude resolutions on object detection accuracy using the proposed RA-YOLO model. We demonstrate that the optimal spatial resolution that leads to the highest detection accuracy depends on the 'tolerated' image size. We further assess the impact of the distance of an object to the camera on the detection accuracy and show that higher spatial resolution enables a greater detection range. These results provide important guidelines for choosing the image spatial resolution and compression settings predicated on available bandwidth, storage, desired inference time, and/or desired detection range, in practical applications.
IVApr 16, 2022
Multi-organ Segmentation Network with Adversarial Performance ValidatorHaoyu Fang, Yi Fang, Xiaofeng Yang
CT organ segmentation on computed tomography (CT) images becomes a significant brick for modern medical image analysis, supporting clinic workflows in multiple domains. Previous segmentation methods include 2D convolution neural networks (CNN) based approaches, fed by CT image slices that lack the structural knowledge in axial view, and 3D CNN-based methods with the expensive computation cost in multi-organ segmentation applications. This paper introduces an adversarial performance validation network into a 2D-to-3D segmentation framework. The classifier and performance validator competition contribute to accurate segmentation results via back-propagation. The proposed network organically converts the 2D-coarse result to 3D high-quality segmentation masks in a coarse-to-fine manner, allowing joint optimization to improve segmentation accuracy. Besides, the structural information of one specific organ is depicted by a statistics-meaningful prior bounding box, which is transformed into a global feature leveraging the learning process in 3D fine segmentation. The experiments on the NIH pancreas segmentation dataset demonstrate the proposed network achieves state-of-the-art accuracy on small organ segmentation and outperforms the previous best. High accuracy is also reported on multi-organ segmentation in a dataset collected by ourselves.
CVAug 17, 2022
Detect and Approach: Close-Range Navigation Support for People with Blindness and Low VisionYu Hao, Junchi Feng, John-Ross Rizzo et al.
People with blindness and low vision (pBLV) experience significant challenges when locating final destinations or targeting specific objects in unfamiliar environments. Furthermore, besides initially locating and orienting oneself to a target object, approaching the final target from one's present position is often frustrating and challenging, especially when one drifts away from the initial planned path to avoid obstacles. In this paper, we develop a novel wearable navigation solution to provide real-time guidance for a user to approach a target object of interest efficiently and effectively in unfamiliar environments. Our system contains two key visual computing functions: initial target object localization in 3D and continuous estimation of the user's trajectory, both based on the 2D video captured by a low-cost monocular camera mounted on in front of the chest of the user. These functions enable the system to suggest an initial navigation path, continuously update the path as the user moves, and offer timely recommendation about the correction of the user's path. Our experiments demonstrate that our system is able to operate with an error of less than 0.5 meter both outdoor and indoor. The system is entirely vision-based and does not need other sensors for navigation, and the computation can be run with the Jetson processor in the wearable system to facilitate real-time navigation assistance.
CVJul 5, 2024
AMD: Automatic Multi-step Distillation of Large-scale Vision ModelsCheng Han, Qifan Wang, Sohail A. Dianat et al.
Transformer-based architectures have become the de-facto standard models for diverse vision tasks owing to their superior performance. As the size of the models continues to scale up, model distillation becomes extremely important in various real applications, particularly on devices limited by computational resources. However, prevailing knowledge distillation methods exhibit diminished efficacy when confronted with a large capacity gap between the teacher and the student, e.g, 10x compression rate. In this paper, we present a novel approach named Automatic Multi-step Distillation (AMD) for large-scale vision model compression. In particular, our distillation process unfolds across multiple steps. Initially, the teacher undergoes distillation to form an intermediate teacher-assistant model, which is subsequently distilled further to the student. An efficient and effective optimization framework is introduced to automatically identify the optimal teacher-assistant that leads to the maximal student performance. We conduct extensive experiments on multiple image classification datasets, including CIFAR-10, CIFAR-100, and ImageNet. The findings consistently reveal that our approach outperforms several established baselines, paving a path for future knowledge distillation methods on large-scale vision models.
CLApr 24Code
How Large Language Models Balance Internal Knowledge with User and Document AssertionsShuowei Li, Haoxin Li, Wenda Chu et al.
Large language models (LLMs) often need to balance their internal parametric knowledge with external information, such as user beliefs and content from retrieved documents, in real-world scenarios like RAG or chat-based systems. A model's ability to reliably process these sources is key to system safety. Previous studies on knowledge conflict and sycophancy are limited to a binary conflict paradigm, primarily exploring conflicts between parametric knowledge and either a document or a user, but ignoring the interactive environment where all three sources exist simultaneously. To fill this gap, we propose a three-source interaction framework and systematically evaluate 27 LLMs from 3 families on 2 datasets. Our findings reveal general patterns: most models rely more on document assertions than user assertions, and this preference is reinforced by post-training. Furthermore, our behavioral analysis shows that most models are impressionable, unable to effectively discriminate between helpful and harmful external information. To address this, we demonstrate that fine-tuning on diverse source interaction data can significantly increase a model's discrimination abilities. In short, our work paves the way for developing trustworthy LLMs that can effectively and reliably integrate multiple sources of information. Code is available at https://github.com/shuowl/llm-source-balancing.
CVNov 26, 2025
PFF-Net: Patch Feature Fitting for Point Cloud Normal EstimationQing Li, Huifang Feng, Kanle Shi et al.
Estimating the normal of a point requires constructing a local patch to provide center-surrounding context, but determining the appropriate neighborhood size is difficult when dealing with different data or geometries. Existing methods commonly employ various parameter-heavy strategies to extract a full feature description from the input patch. However, they still have difficulties in accurately and efficiently predicting normals for various point clouds. In this work, we present a new idea of feature extraction for robust normal estimation of point clouds. We use the fusion of multi-scale features from different neighborhood sizes to address the issue of selecting reasonable patch sizes for various data or geometries. We seek to model a patch feature fitting (PFF) based on multi-scale features to approximate the optimal geometric description for normal estimation and implement the approximation process via multi-scale feature aggregation and cross-scale feature compensation. The feature aggregation module progressively aggregates the patch features of different scales to the center of the patch and shrinks the patch size by removing points far from the center. It not only enables the network to precisely capture the structure characteristic in a wide range, but also describes highly detailed geometries. The feature compensation module ensures the reusability of features from earlier layers of large scales and reveals associated information in different patch sizes. Our approximation strategy based on aggregating the features of multiple scales enables the model to achieve scale adaptation of varying local patches and deliver the optimal feature description. Extensive experiments demonstrate that our method achieves state-of-the-art performance on both synthetic and real-world datasets with fewer network parameters and running time.
IVJul 11, 2024
FairDomain: Achieving Fairness in Cross-Domain Medical Image Segmentation and ClassificationYu Tian, Congcong Wen, Min Shi et al.
Addressing fairness in artificial intelligence (AI), particularly in medical AI, is crucial for ensuring equitable healthcare outcomes. Recent efforts to enhance fairness have introduced new methodologies and datasets in medical AI. However, the fairness issue under the setting of domain transfer is almost unexplored, while it is common that clinics rely on different imaging technologies (e.g., different retinal imaging modalities) for patient diagnosis. This paper presents FairDomain, a pioneering systemic study into algorithmic fairness under domain shifts, employing state-of-the-art domain adaptation (DA) and generalization (DG) algorithms for both medical segmentation and classification tasks to understand how biases are transferred between different domains. We also introduce a novel plug-and-play fair identity attention (FIA) module that adapts to various DA and DG algorithms to improve fairness by using self-attention to adjust feature importance based on demographic attributes. Additionally, we curate the first fairness-focused dataset with two paired imaging modalities for the same patient cohort on medical segmentation and classification tasks, to rigorously assess fairness in domain-shift scenarios. Excluding the confounding impact of demographic distribution variation between source and target domains will allow clearer quantification of the performance of domain transfer models. Our extensive evaluations reveal that the proposed FIA significantly enhances both model performance accounted for fairness across all domain shift settings (i.e., DA and DG) with respect to different demographics, which outperforms existing methods on both segmentation and classification. The code and data can be accessed at https://ophai.hms.harvard.edu/datasets/harvard-fairdomain20k.
AIJan 7
Controllable LLM Reasoning via Sparse Autoencoder-Based SteeringYi Fang, Wenjie Wang, Mingfeng Xue et al.
Large Reasoning Models (LRMs) exhibit human-like cognitive reasoning strategies (e.g. backtracking, cross-verification) during reasoning process, which improves their performance on complex tasks. Currently, reasoning strategies are autonomously selected by LRMs themselves. However, such autonomous selection often produces inefficient or even erroneous reasoning paths. To make reasoning more reliable and flexible, it is important to develop methods for controlling reasoning strategies. Existing methods struggle to control fine-grained reasoning strategies due to conceptual entanglement in LRMs' hidden states. To address this, we leverage Sparse Autoencoders (SAEs) to decompose strategy-entangled hidden states into a disentangled feature space. To identify the few strategy-specific features from the vast pool of SAE features, we propose SAE-Steering, an efficient two-stage feature identification pipeline. SAE-Steering first recalls features that amplify the logits of strategy-specific keywords, filtering out over 99\% of features, and then ranks the remaining features by their control effectiveness. Using the identified strategy-specific features as control vectors, SAE-Steering outperforms existing methods by over 15\% in control effectiveness. Furthermore, controlling reasoning strategies can redirect LRMs from erroneous paths to correct ones, achieving a 7\% absolute accuracy improvement.
CVDec 7, 2023Code
Differentiable Registration of Images and LiDAR Point Clouds with VoxelPoint-to-Pixel MatchingJunsheng Zhou, Baorui Ma, Wenyuan Zhang et al.
Cross-modality registration between 2D images from cameras and 3D point clouds from LiDARs is a crucial task in computer vision and robotic. Previous methods estimate 2D-3D correspondences by matching point and pixel patterns learned by neural networks, and use Perspective-n-Points (PnP) to estimate rigid transformation during post-processing. However, these methods struggle to map points and pixels to a shared latent space robustly since points and pixels have very different characteristics with patterns learned in different manners (MLP and CNN), and they also fail to construct supervision directly on the transformation since the PnP is non-differentiable, which leads to unstable registration results. To address these problems, we propose to learn a structured cross-modality latent space to represent pixel features and 3D features via a differentiable probabilistic PnP solver. Specifically, we design a triplet network to learn VoxelPoint-to-Pixel matching, where we represent 3D elements using both voxels and points to learn the cross-modality latent space with pixels. We design both the voxel and pixel branch based on CNNs to operate convolutions on voxels/pixels represented in grids, and integrate an additional point branch to regain the information lost during voxelization. We train our framework end-to-end by imposing supervisions directly on the predicted pose distribution with a probabilistic PnP solver. To explore distinctive patterns of cross-modality features, we design a novel loss with adaptive-weighted optimization for cross-modality feature description. The experimental results on KITTI and nuScenes datasets show significant improvements over the state-of-the-art methods. The code and models are available at https://github.com/junshengzhou/VP2P-Match.
CVOct 31, 2023
A Multi-Modal Foundation Model to Assist People with Blindness and Low Vision in Environmental InteractionYu Hao, Fan Yang, Hao Huang et al.
People with blindness and low vision (pBLV) encounter substantial challenges when it comes to comprehensive scene recognition and precise object identification in unfamiliar environments. Additionally, due to the vision loss, pBLV have difficulty in accessing and identifying potential tripping hazards on their own. In this paper, we present a pioneering approach that leverages a large vision-language model to enhance visual perception for pBLV, offering detailed and comprehensive descriptions of the surrounding environments and providing warnings about the potential risks. Our method begins by leveraging a large image tagging model (i.e., Recognize Anything (RAM)) to identify all common objects present in the captured images. The recognition results and user query are then integrated into a prompt, tailored specifically for pBLV using prompt engineering. By combining the prompt and input image, a large vision-language model (i.e., InstructBLIP) generates detailed and comprehensive descriptions of the environment and identifies potential risks in the environment by analyzing the environmental objects and scenes, relevant to the prompt. We evaluate our approach through experiments conducted on both indoor and outdoor datasets. Our results demonstrate that our method is able to recognize objects accurately and provide insightful descriptions and analysis of the environment for pBLV.
IRJul 17, 2023
Soft Prompt Tuning for Augmenting Dense Retrieval with Large Language ModelsZhiyuan Peng, Xuyang Wu, Qifan Wang et al.
Dense retrieval (DR) converts queries and documents into dense embeddings and measures the similarity between queries and documents in vector space. One of the challenges in DR is the lack of domain-specific training data. While DR models can learn from large-scale public datasets like MS MARCO through transfer learning, evidence shows that not all DR models and domains can benefit from transfer learning equally. Recently, some researchers have resorted to large language models (LLMs) to improve the zero-shot and few-shot DR models. However, the hard prompts or human-written prompts utilized in these works cannot guarantee the good quality of generated weak queries. To tackle this, we propose soft prompt tuning for augmenting DR (SPTAR): For each task, we leverage soft prompt-tuning to optimize a task-specific soft prompt on limited ground truth data and then prompt the LLMs to tag unlabeled documents with weak queries, yielding enough weak document-query pairs to train task-specific dense retrievers. We design a filter to select high-quality example document-query pairs in the prompt to further improve the quality of weak tagged queries. To the best of our knowledge, there is no prior work utilizing soft prompt tuning to augment DR models. The experiments demonstrate that SPTAR outperforms the unsupervised baselines BM25 and the recently proposed LLMs-based augmentation method for DR.
CLSep 25, 2024
Evaluating and Enhancing Large Language Models for Novelty Assessment in Scholarly PublicationsEthan Lin, Zhiyuan Peng, Yi Fang
Recent studies have evaluated the creativity/novelty of large language models (LLMs) primarily from a semantic perspective, using benchmarks from cognitive science. However, accessing the novelty in scholarly publications is a largely unexplored area in evaluating LLMs. In this paper, we introduce a scholarly novelty benchmark (SchNovel) to evaluate LLMs' ability to assess novelty in scholarly papers. SchNovel consists of 15000 pairs of papers across six fields sampled from the arXiv dataset with publication dates spanning 2 to 10 years apart. In each pair, the more recently published paper is assumed to be more novel. Additionally, we propose RAG-Novelty, which simulates the review process taken by human reviewers by leveraging the retrieval of similar papers to assess novelty. Extensive experiments provide insights into the capabilities of different LLMs to assess novelty and demonstrate that RAG-Novelty outperforms recent baseline models.
CLApr 7
AutoSOTA: An End-to-End Automated Research System for State-of-the-Art AI Model DiscoveryYu Li, Chenyang Shao, Xinyang Liu et al.
Artificial intelligence research increasingly depends on prolonged cycles of reproduction, debugging, and iterative refinement to achieve State-Of-The-Art (SOTA) performance, creating a growing need for systems that can accelerate the full pipeline of empirical model optimization. In this work, we introduce AutoSOTA, an end-to-end automated research system that advances the latest SOTA models published in top-tier AI papers to reproducible and empirically improved new SOTA models. We formulate this problem through three tightly coupled stages: resource preparation and goal setting; experiment evaluation; and reflection and ideation. To tackle this problem, AutoSOTA adopts a multi-agent architecture with eight specialized agents that collaboratively ground papers to code and dependencies, initialize and repair execution environments, track long-horizon experiments, generate and schedule optimization ideas, and supervise validity to avoid spurious gains. We evaluate AutoSOTA on recent research papers collected from eight top-tier AI conferences under filters for code availability and execution cost. Across these papers, AutoSOTA achieves strong end-to-end performance in both automated replication and subsequent optimization. Specifically, it successfully discovers 105 new SOTA models that surpass the original reported methods, averaging approximately five hours per paper. Case studies spanning LLM, NLP, computer vision, time series, and optimization further show that the system can move beyond routine hyperparameter tuning to identify architectural innovation, algorithmic redesigns, and workflow-level improvements. These results suggest that end-to-end research automation can serve not only as a performance optimizer, but also as a new form of research infrastructure that reduces repetitive experimental burden and helps redirect human attention toward higher-level scientific creativity.
IRMar 21, 2022
DIANES: A DEI Audit Toolkit for News SourcesXiaoxiao Shang, Zhiyuan Peng, Qiming Yuan et al.
Professional news media organizations have always touted the importance that they give to multiple perspectives. However, in practice the traditional approach to all-sides has favored people in the dominant culture. Hence it has come under ethical critique under the new norms of diversity, equity, and inclusion (DEI). When DEI is applied to journalism, it goes beyond conventional notions of impartiality and bias and instead democratizes the journalistic practice of sourcing -- who is quoted or interviewed, who is not, how often, from which demographic group, gender, and so forth. There is currently no real-time or on-demand tool in the hands of reporters to analyze the persons they quote. In this paper, we present DIANES, a DEI Audit Toolkit for News Sources. It consists of a natural language processing pipeline on the backend to extract quotes, speakers, titles, and organizations from news articles in real time. On the frontend, DIANES offers the WordPress plugins, a Web monitor, and a DEI annotation API service, to help news media monitor their own quoting patterns and push themselves towards DEI norms.
CLAug 15, 2024
W-RAG: Weakly Supervised Dense Retrieval in RAG for Open-domain Question AnsweringJinming Nian, Zhiyuan Peng, Qifan Wang et al.
In knowledge-intensive tasks such as open-domain question answering (OpenQA), large language models (LLMs) often struggle to generate factual answers, relying solely on their internal (parametric) knowledge. To address this limitation, Retrieval-Augmented Generation (RAG) systems enhance LLMs by retrieving relevant information from external sources, thereby positioning the retriever as a pivotal component. Although dense retrieval demonstrates state-of-the-art performance, its training poses challenges due to the scarcity of ground-truth evidence, largely attributed to the high costs of human annotation. In this paper, we propose W-RAG, a method that draws weak training signals from the downstream task (such as OpenQA) of an LLM, and fine-tunes the retriever to prioritize passages that most benefit the task. Specifically, we rerank the top-$k$ passages retrieved via BM25 by assessing the probability that the LLM will generate the correct answer for a question given each passage. The highest-ranking passages are then used as positive fine-tuning examples for dense retrieval. We conduct comprehensive experiments across four publicly available OpenQA datasets to demonstrate that our approach enhances both retrieval and OpenQA performance compared to baseline models, achieving results comparable to models fine-tuned with human-labeled data.
CLFeb 21, 2025Code
Does Reasoning Introduce Bias? A Study of Social Bias Evaluation and Mitigation in LLM ReasoningXuyang Wu, Jinming Nian, Ting-Ruen Wei et al.
Recent advances in large language models (LLMs) have enabled automatic generation of chain-of-thought (CoT) reasoning, leading to strong performance on tasks such as math and code. However, when reasoning steps reflect social stereotypes (e.g., those related to gender, race or age), they can reinforce harmful associations and lead to misleading conclusions. We present the first systematic evaluation of social bias within LLM-generated reasoning, focusing on reasoning language models (e.g., DeepSeek-R1, OpenAI o1) that natively produce reasoning chains as part of their answers. Using the BBQ dataset, we analyze both prediction accuracy and reasoning bias across a broad spectrum of models, including instruction-tuned and CoT-augmented variants of DeepSeek-R1 (8B/32B), ChatGPT, and other open-source LLMs. We quantify how biased reasoning steps correlate with incorrect predictions and often lead to stereotype expression. To mitigate reasoning-induced bias, we propose Answer Distribution as Bias Proxy (ADBP), a lightweight mitigation method that detects bias by tracking how model predictions change across incremental reasoning steps. ADBP outperforms Stereotype-free Reasoning Pattern (SfRP) baseline in most cases, mitigating bias and improving the accuracy of LLM outputs. Evaluation and mitigation code is available at https://github.com/elviswxy/LLM_reasoning_bias.
CVJul 20, 2023
Revisiting Fine-Tuning Strategies for Self-supervised Medical Imaging AnalysisMuhammad Osama Khan, Yi Fang
Despite the rapid progress in self-supervised learning (SSL), end-to-end fine-tuning still remains the dominant fine-tuning strategy for medical imaging analysis. However, it remains unclear whether this approach is truly optimal for effectively utilizing the pre-trained knowledge, especially considering the diverse categories of SSL that capture different types of features. In this paper, we present the first comprehensive study that discovers effective fine-tuning strategies for self-supervised learning in medical imaging. After developing strong contrastive and restorative SSL baselines that outperform SOTA methods across four diverse downstream tasks, we conduct an extensive fine-tuning analysis across multiple pre-training and fine-tuning datasets, as well as various fine-tuning dataset sizes. Contrary to the conventional wisdom of fine-tuning only the last few layers of a pre-trained network, we show that fine-tuning intermediate layers is more effective, with fine-tuning the second quarter (25-50%) of the network being optimal for contrastive SSL whereas fine-tuning the third quarter (50-75%) of the network being optimal for restorative SSL. Compared to the de-facto standard of end-to-end fine-tuning, our best fine-tuning strategy, which fine-tunes a shallower network consisting of the first three quarters (0-75%) of the pre-trained network, yields improvements of as much as 5.48%. Additionally, using these insights, we propose a simple yet effective method to leverage the complementary strengths of multiple SSL models, resulting in enhancements of up to 3.57% compared to using the best model alone. Hence, our fine-tuning strategies not only enhance the performance of individual SSL models, but also enable effective utilization of the complementary strengths offered by multiple SSL models, leading to significant improvements in self-supervised medical imaging analysis.
CLJan 7
Submodular Evaluation Subset Selection in Automatic Prompt OptimizationJinming Nian, Zhiyuan Peng, Hongwei Shang et al.
Automatic prompt optimization reduces manual prompt engineering, but relies on task performance measured on a small, often randomly sampled evaluation subset as its main source of feedback signal. Despite this, how to select that evaluation subset is usually treated as an implementation detail. We study evaluation subset selection for prompt optimization from a principled perspective and propose SESS, a submodular evaluation subset selection method. We frame selection as maximizing an objective set function and show that, under mild conditions, it is monotone and submodular, enabling greedy selection with theoretical guarantees. Across GSM8K, MATH, and GPQA-Diamond, submodularly selected evaluation subsets can yield better optimized prompts than random or heuristic baselines.
CLMar 31
MemRerank: Preference Memory for Personalized Product RerankingZhiyuan Peng, Xuyang Wu, Huaixiao Tou et al.
LLM-based shopping agents increasingly rely on long purchase histories and multi-turn interactions for personalization, yet naively appending raw history to prompts is often ineffective due to noise, length, and relevance mismatch. We propose MemRerank, a preference memory framework that distills user purchase history into concise, query-independent signals for personalized product reranking. To study this problem, we build an end-to-end benchmark and evaluation framework centered on an LLM-based \textbf{1-in-5} selection task, which measures both memory quality and downstream reranking utility. We further train the memory extractor with reinforcement learning (RL), using downstream reranking performance as supervision. Experiments with two LLM-based rerankers show that MemRerank consistently outperforms no-memory, raw-history, and off-the-shelf memory baselines, yielding up to \textbf{+10.61} absolute points in 1-in-5 accuracy. These results suggest that explicit preference memory is a practical and effective building block for personalization in agentic e-commerce systems.
AIFeb 17, 2025Code
GRAPHGPT-O: Synergistic Multimodal Comprehension and Generation on GraphsYi Fang, Bowen Jin, Jiacheng Shen et al.
The rapid development of Multimodal Large Language Models (MLLMs) has enabled the integration of multiple modalities, including texts and images, within the large language model (LLM) framework. However, texts and images are usually interconnected, forming a multimodal attributed graph (MMAG). It is underexplored how MLLMs can incorporate the relational information (\textit{i.e.}, graph structure) and semantic information (\textit{i.e.,} texts and images) on such graphs for multimodal comprehension and generation. In this paper, we propose GraphGPT-o, which supports omni-multimodal understanding and creation on MMAGs. We first comprehensively study linearization variants to transform semantic and structural information as input for MLLMs. Then, we propose a hierarchical aligner that enables deep graph encoding, bridging the gap between MMAGs and MLLMs. Finally, we explore the inference choices, adapting MLLM to interleaved text and image generation in graph scenarios. Extensive experiments on three datasets from different domains demonstrate the effectiveness of our proposed method. Datasets and codes will be open-sourced upon acceptance.
LGApr 6Code
DP-OPD: Differentially Private On-Policy Distillation for Language ModelsFatemeh Khadem, Sajad Mousavi, Yi Fang et al.
Large language models (LLMs) are increasingly adapted to proprietary and domain-specific corpora that contain sensitive information, creating a tension between formal privacy guarantees and efficient deployment through model compression. Differential privacy (DP), typically enforced via DP-SGD, provides record-level protection but often incurs substantial utility loss in autoregressive generation, where optimization noise can amplify exposure bias and compounding errors along long rollouts. Existing approaches to private distillation either apply DP-SGD to both teacher and student, worsening computation and the privacy--utility tradeoff, or rely on DP synthetic text generation from a DP-trained teacher, avoiding DP on the student at the cost of DP-optimizing a large teacher and introducing an offline generation pipeline. We propose \textbf{Differentially Private On-Policy Distillation (DP-OPD)}, a synthesis-free framework that enforces privacy solely through DP-SGD on the student while leveraging a frozen teacher to provide dense token-level targets on \emph{student-generated} trajectories. DP-OPD instantiates this idea via \emph{private generalized knowledge distillation} on continuation tokens. Under a strict privacy budget ($\varepsilon=2.0$), DP-OPD improves perplexity over DP fine-tuning and off-policy DP distillation, and outperforms synthesis-based DP distillation (Yelp: 44.15$\rightarrow$41.68; BigPatent: 32.43$\rightarrow$30.63), while substantially simplifying the training pipeline. In particular, \textbf{DP-OPD collapses private compression into a single DP student-training loop} by eliminating DP teacher training and offline synthetic text generation. Code will be released upon publication at https://github.com/khademfatemeh/dp_opd.
LGJan 14
Searth Transformer: A Transformer Architecture Incorporating Earth's Geospheric Physical Priors for Global Mid-Range Weather ForecastingTianye Li, Qi Liu, Hao Li et al.
Accurate global medium-range weather forecasting is fundamental to Earth system science. Most existing Transformer-based forecasting models adopt vision-centric architectures that neglect the Earth's spherical geometry and zonal periodicity. In addition, conventional autoregressive training is computationally expensive and limits forecast horizons due to error accumulation. To address these challenges, we propose the Shifted Earth Transformer (Searth Transformer), a physics-informed architecture that incorporates zonal periodicity and meridional boundaries into window-based self-attention for physically consistent global information exchange. We further introduce a Relay Autoregressive (RAR) fine-tuning strategy that enables learning long-range atmospheric evolution under constrained memory and computational budgets. Based on these methods, we develop YanTian, a global medium-range weather forecasting model. YanTian achieves higher accuracy than the high-resolution forecast of the European Centre for Medium-Range Weather Forecasts and performs competitively with state-of-the-art AI models at one-degree resolution, while requiring roughly 200 times lower computational cost than standard autoregressive fine-tuning. Furthermore, YanTian attains a longer skillful forecast lead time for Z500 (10.3 days) than HRES (9 days). Beyond weather forecasting, this work establishes a robust algorithmic foundation for predictive modeling of complex global-scale geophysical circulation systems, offering new pathways for Earth system science.
CVNov 14, 2025
Phys-Liquid: A Physics-Informed Dataset for Estimating 3D Geometry and Volume of Transparent Deformable LiquidsKe Ma, Yizhou Fang, Jean-Baptiste Weibel et al.
Estimating the geometric and volumetric properties of transparent deformable liquids is challenging due to optical complexities and dynamic surface deformations induced by container movements. Autonomous robots performing precise liquid manipulation tasks, such as dispensing, aspiration, and mixing, must handle containers in ways that inevitably induce these deformations, complicating accurate liquid state assessment. Current datasets lack comprehensive physics-informed simulation data representing realistic liquid behaviors under diverse dynamic scenarios. To bridge this gap, we introduce Phys-Liquid, a physics-informed dataset comprising 97,200 simulation images and corresponding 3D meshes, capturing liquid dynamics across multiple laboratory scenes, lighting conditions, liquid colors, and container rotations. To validate the realism and effectiveness of Phys-Liquid, we propose a four-stage reconstruction and estimation pipeline involving liquid segmentation, multi-view mask generation, 3D mesh reconstruction, and real-world scaling. Experimental results demonstrate improved accuracy and consistency in reconstructing liquid geometry and volume, outperforming existing benchmarks. The dataset and associated validation methods facilitate future advancements in transparent liquid perception tasks. The dataset and code are available at https://dualtransparency.github.io/Phys-Liquid/.
LGDec 29, 2024Code
Impact of Data Distribution on Fairness Guarantees in Equitable Deep LearningYan Luo, Congcong Wen, Min Shi et al.
We present a comprehensive theoretical framework analyzing the relationship between data distributions and fairness guarantees in equitable deep learning. Our work establishes novel theoretical bounds that explicitly account for data distribution heterogeneity across demographic groups, while introducing a formal analysis framework that minimizes expected loss differences across these groups. We derive comprehensive theoretical bounds for fairness errors and convergence rates, and characterize how distributional differences between groups affect the fundamental trade-off between fairness and accuracy. Through extensive experiments on diverse datasets, including FairVision (ophthalmology), CheXpert (chest X-rays), HAM10000 (dermatology), and FairFace (facial recognition), we validate our theoretical findings and demonstrate that differences in feature distributions across demographic groups significantly impact model fairness, with performance disparities particularly pronounced in racial categories. The theoretical bounds we derive crroborate these empirical observations, providing insights into the fundamental limits of achieving fairness in deep learning models when faced with heterogeneous data distributions. This work advances our understanding of fairness in AI-based diagnosis systems and provides a theoretical foundation for developing more equitable algorithms. The code for analysis is publicly available via \url{https://github.com/Harvard-Ophthalmology-AI-Lab/fairness_guarantees}.
ROSep 26, 2024
Target Pose Guided Whole-body Grasping Motion Generation for Digital HumansQuanquan Shao, Yi Fang
Grasping manipulation is a fundamental mode for human interaction with daily life objects. The synthesis of grasping motion is also greatly demanded in many applications such as animation and robotics. In objects grasping research field, most works focus on generating the last static grasping pose with a parallel gripper or dexterous hand. Grasping motion generation for the full arm especially for the full humanlike intelligent agent is still under-explored. In this work, we propose a grasping motion generation framework for digital human which is an anthropomorphic intelligent agent with high degrees of freedom in virtual world. Given an object known initial pose in 3D space, we first generate a target pose for whole-body digital human based on off-the-shelf target grasping pose generation methods. With an initial pose and this generated target pose, a transformer-based neural network is used to generate the whole grasping trajectory, which connects initial pose and target pose smoothly and naturally. Additionally, two post optimization components are designed to mitigates foot-skating issue and hand-object interpenetration separately. Experiments are conducted on GRAB dataset to demonstrate effectiveness of this proposed method for whole-body grasping motion generation with randomly placed unknown objects.
AINov 24, 2025Code
Scaling Agentic Reinforcement Learning for Tool-Integrated Reasoning in VLMsMeng Lu, Ran Xu, Yi Fang et al.
While recent vision-language models (VLMs) demonstrate strong image understanding, their ability to "think with images", i.e., to reason through multi-step visual interactions, remains limited. We introduce VISTA-Gym, a scalable training environment for incentivizing tool-integrated visual reasoning capabilities in VLMs. VISTA-Gym unifies diverse real-world multimodal reasoning tasks (7 tasks from 13 datasets in total) with a standardized interface for visual tools (e.g., grounding, parsing), executable interaction loops, verifiable feedback signals, and efficient trajectory logging, enabling visual agentic reinforcement learning at scale. While recent VLMs exhibit strong text-only reasoning, both proprietary and open-source models still struggle with tool selection, invocation, and coordination. With VISTA-Gym, we train VISTA-R1 to interleave tool-use with agentic reasoning via multi-turn trajectory sampling and end-to-end reinforcement learning. Extensive experiments across 11 public reasoning-intensive VQA benchmarks show that VISTA-R1-8B outperforms state-of-the-art baselines with similar sizes by 9.51%-18.72%, demonstrating VISTA-Gym as an effective training ground to unlock the tool-integrated reasoning capabilities for VLMs.
CLNov 20, 2023
MemoryCompanion: A Smart Healthcare Solution to Empower Efficient Alzheimer's Care Via Unleashing Generative AILifei Zheng, Yeonie Heo, Yi Fang
With the rise of Large Language Models (LLMs), notably characterized by GPT frameworks, there emerges a catalyst for novel healthcare applications. Earlier iterations of chatbot caregivers, though existent, have yet to achieve a dimension of human-like authenticity. This paper unveils `MemoryCompanion' a pioneering digital health solution explicitly tailored for Alzheimer's disease (AD) patients and their caregivers. Drawing upon the nuances of GPT technology and prompt engineering, MemoryCompanion manifests a personalized caregiving paradigm, fostering interactions via voice-cloning and talking-face mechanisms that resonate with the familiarity of known companions. Using advanced prompt-engineering, the system intricately adapts to each patient's distinct profile, curating its content and communication style accordingly. This approach strives to counteract prevalent issues of social isolation and loneliness frequently observed in AD demographics. Our methodology, grounded in its innovative design, addresses both the caregiving and technological challenges intrinsic to this domain.
CVAug 20, 2025Code
CurveFlow: Curvature-Guided Flow Matching for Image GenerationYan Luo, Drake Du, Hao Huang et al.
Existing rectified flow models are based on linear trajectories between data and noise distributions. This linearity enforces zero curvature, which can inadvertently force the image generation process through low-probability regions of the data manifold. A key question remains underexplored: how does the curvature of these trajectories correlate with the semantic alignment between generated images and their corresponding captions, i.e., instructional compliance? To address this, we introduce CurveFlow, a novel flow matching framework designed to learn smooth, non-linear trajectories by directly incorporating curvature guidance into the flow path. Our method features a robust curvature regularization technique that penalizes abrupt changes in the trajectory's intrinsic dynamics.Extensive experiments on MS COCO 2014 and 2017 demonstrate that CurveFlow achieves state-of-the-art performance in text-to-image generation, significantly outperforming both standard rectified flow variants and other non-linear baselines like Rectified Diffusion. The improvements are especially evident in semantic consistency metrics such as BLEU, METEOR, ROUGE, and CLAIR. This confirms that our curvature-aware modeling substantially enhances the model's ability to faithfully follow complex instructions while simultaneously maintaining high image quality. The code is made publicly available at https://github.com/Harvard-AI-and-Robotics-Lab/CurveFlow.
CYJul 21, 2025Code
FairFedMed: Benchmarking Group Fairness in Federated Medical Imaging with FairLoRAMinghan Li, Congcong Wen, Yu Tian et al.
Fairness remains a critical concern in healthcare, where unequal access to services and treatment outcomes can adversely affect patient health. While Federated Learning (FL) presents a collaborative and privacy-preserving approach to model training, ensuring fairness is challenging due to heterogeneous data across institutions, and current research primarily addresses non-medical applications. To fill this gap, we establish the first experimental benchmark for fairness in medical FL, evaluating six representative FL methods across diverse demographic attributes and imaging modalities. We introduce FairFedMed, the first medical FL dataset specifically designed to study group fairness (i.e., demographics). It comprises two parts: FairFedMed-Oph, featuring 2D fundus and 3D OCT ophthalmology samples with six demographic attributes; and FairFedMed-Chest, which simulates real cross-institutional FL using subsets of CheXpert and MIMIC-CXR. Together, they support both simulated and real-world FL across diverse medical modalities and demographic groups. Existing FL models often underperform on medical images and overlook fairness across demographic groups. To address this, we propose FairLoRA, a fairness-aware FL framework based on SVD-based low-rank approximation. It customizes singular value matrices per demographic group while sharing singular vectors, ensuring both fairness and efficiency. Experimental results on the FairFedMed dataset demonstrate that FairLoRA not only achieves state-of-the-art performance in medical image classification but also significantly improves fairness across diverse populations. Our code and dataset can be accessible via link: https://wang.hms.harvard.edu/fairfedmed/.
CLJun 25, 2024Code
Evaluating Fairness in Large Vision-Language Models Across Diverse Demographic Attributes and PromptsXuyang Wu, Yuan Wang, Hsin-Tai Wu et al.
Large vision-language models (LVLMs) have recently achieved significant progress, demonstrating strong capabilities in open-world visual understanding. However, it is not yet clear how LVLMs address demographic biases in real life, especially the disparities across attributes such as gender, skin tone, age and race. In this paper, We empirically investigate \emph{visual fairness} in several mainstream LVLMs by auditing their performance disparities across demographic attributes using public fairness benchmark datasets (e.g., FACET, UTKFace). Our fairness evaluation framework employs direct and single-choice question prompt on visual question-answering/classification tasks. Despite advancements in visual understanding, our zero-shot prompting results show that both open-source and closed-source LVLMs continue to exhibit fairness issues across different prompts and demographic groups. Furthermore, we propose a potential multi-modal Chain-of-thought (CoT) based strategy for unfairness mitigation, applicable to both open-source and closed-source LVLMs. This approach enhances transparency and offers a scalable solution for addressing fairness, providing a solid foundation for future research and practical efforts in unfairness mitigation. The dataset and code used in this study are publicly available at this GitHub Repository.
CLJun 17, 2024Code
UniGLM: Training One Unified Language Model for Text-Attributed Graph EmbeddingYi Fang, Dongzhe Fan, Sirui Ding et al.
Representation learning on text-attributed graphs (TAGs), where nodes are represented by textual descriptions, is crucial for textual and relational knowledge systems and recommendation systems. Currently, state-of-the-art embedding methods for TAGs primarily focus on fine-tuning language models (e.g., BERT) using structure-aware training signals. While effective, these methods are tailored for individual TAG and cannot generalize across various graph scenarios. Given the shared textual space, leveraging multiple TAGs for joint fine-tuning, aligning text and graph structure from different aspects, would be more beneficial. Motivated by this, we introduce a novel Unified Graph Language Model (UniGLM) framework, the first graph embedding model that generalizes well to both in-domain and cross-domain TAGs. Specifically, UniGLM is trained over multiple TAGs with different domains and scales using self-supervised contrastive learning. UniGLM includes an adaptive positive sample selection technique for identifying structurally similar nodes and a lazy contrastive module that is devised to accelerate training by minimizing repetitive encoding calculations. Extensive empirical results across 9 benchmark TAGs demonstrate UniGLM's efficacy against leading embedding baselines in terms of generalization (various downstream tasks and backbones) and transfer learning (in and out of domain scenarios). The code is available at https://github.com/NYUSHCS/UniGLM.
LGJun 17, 2024Code
GAugLLM: Improving Graph Contrastive Learning for Text-Attributed Graphs with Large Language ModelsYi Fang, Dongzhe Fan, Daochen Zha et al.
This work studies self-supervised graph learning for text-attributed graphs (TAGs) where nodes are represented by textual attributes. Unlike traditional graph contrastive methods that perturb the numerical feature space and alter the graph's topological structure, we aim to improve view generation through language supervision. This is driven by the prevalence of textual attributes in real applications, which complement graph structures with rich semantic information. However, this presents challenges because of two major reasons. First, text attributes often vary in length and quality, making it difficulty to perturb raw text descriptions without altering their original semantic meanings. Second, although text attributes complement graph structures, they are not inherently well-aligned. To bridge the gap, we introduce GAugLLM, a novel framework for augmenting TAGs. It leverages advanced large language models like Mistral to enhance self-supervised graph learning. Specifically, we introduce a mixture-of-prompt-expert technique to generate augmented node features. This approach adaptively maps multiple prompt experts, each of which modifies raw text attributes using prompt engineering, into numerical feature space. Additionally, we devise a collaborative edge modifier to leverage structural and textual commonalities, enhancing edge augmentation by examining or building connections between nodes. Empirical results across five benchmark datasets spanning various domains underscore our framework's ability to enhance the performance of leading contrastive methods as a plug-in tool. Notably, we observe that the augmented features and graph structure can also enhance the performance of standard generative methods, as well as popular graph neural networks. The open-sourced implementation of our GAugLLM is available at Github.
LGJun 12, 2024Code
GraphFM: A Comprehensive Benchmark for Graph Foundation ModelYuhao Xu, Xinqi Liu, Keyu Duan et al.
Foundation Models (FMs) serve as a general class for the development of artificial intelligence systems, offering broad potential for generalization across a spectrum of downstream tasks. Despite extensive research into self-supervised learning as the cornerstone of FMs, several outstanding issues persist in Graph Foundation Models that rely on graph self-supervised learning, namely: 1) Homogenization. The extent of generalization capability on downstream tasks remains unclear. 2) Scalability. It is unknown how effectively these models can scale to large datasets. 3) Efficiency. The training time and memory usage of these models require evaluation. 4) Training Stop Criteria. Determining the optimal stopping strategy for pre-training across multiple tasks to maximize performance on downstream tasks. To address these questions, we have constructed a rigorous benchmark that thoroughly analyzes and studies the generalization and scalability of self-supervised Graph Neural Network (GNN) models. Regarding generalization, we have implemented and compared the performance of various self-supervised GNN models, trained to generate node representations, across tasks such as node classification, link prediction, and node clustering. For scalability, we have compared the performance of various models after training using full-batch and mini-batch strategies. Additionally, we have assessed the training efficiency of these models by conducting experiments to test their GPU memory usage and throughput. Through these experiments, we aim to provide insights to motivate future research. The code for this benchmark is publicly available at https://github.com/NYUSHCS/GraphFM.
CLJun 10, 2024Code
EAVE: Efficient Product Attribute Value Extraction via Lightweight Sparse-layer InteractionLi Yang, Qifan Wang, Jianfeng Chi et al.
Product attribute value extraction involves identifying the specific values associated with various attributes from a product profile. While existing methods often prioritize the development of effective models to improve extraction performance, there has been limited emphasis on extraction efficiency. However, in real-world scenarios, products are typically associated with multiple attributes, necessitating multiple extractions to obtain all corresponding values. In this work, we propose an Efficient product Attribute Value Extraction (EAVE) approach via lightweight sparse-layer interaction. Specifically, we employ a heavy encoder to separately encode the product context and attribute. The resulting non-interacting heavy representations of the context can be cached and reused for all attributes. Additionally, we introduce a light encoder to jointly encode the context and the attribute, facilitating lightweight interactions between them. To enrich the interaction within the lightweight encoder, we design a sparse-layer interaction module to fuse the non-interacting heavy representation into the lightweight encoder. Comprehensive evaluation on two benchmarks demonstrate that our method achieves significant efficiency gains with neutral or marginal loss in performance when the context is long and number of attributes is large. Our code is available \href{https://anonymous.4open.science/r/EAVE-EA18}{here}.
GRJun 7, 2019Code
Coherent Point Drift Networks: Unsupervised Learning of Non-Rigid Point Set RegistrationLingjing Wang, Xiang Li, Jianchun Chen et al.
Given new pairs of source and target point sets, standard point set registration methods often repeatedly conduct the independent iterative search of desired geometric transformation to align the source point set with the target one. This limits their use in applications to handle the real-time point set registration with large volume dataset. This paper presents a novel method, named coherent point drift networks (CPD-Net), for the unsupervised learning of geometric transformation towards real-time non-rigid point set registration. In contrast to previous efforts (e.g. coherent point drift), CPD-Net can learn displacement field function to estimate geometric transformation from a training dataset, consequently, to predict the desired geometric transformation for the alignment of previously unseen pairs without any additional iterative optimization process. Furthermore, CPD-Net leverages the power of deep neural networks to fit an arbitrary function, that adaptively accommodates different levels of complexity of the desired geometric transformation. Particularly, CPD-Net is proved with a theoretical guarantee to learn a continuous displacement vector function that could further avoid imposing additional parametric smoothness constraint as in previous works. Our experiments verify the impressive performance of CPD-Net for non-rigid point set registration on various 2D/3D datasets, even in the presence of significant displacement noise, outliers, and missing points. Our code will be available at https://github.com/nyummvc/CPD-Net.
GRApr 2, 2019Code
Non-Rigid Point Set Registration NetworksLingjing Wang, Jianchun Chen, Xiang Li et al.
Point set registration is defined as a process to determine the spatial transformation from the source point set to the target one. Existing methods often iteratively search for the optimal geometric transformation to register a given pair of point sets, driven by minimizing a predefined alignment loss function. In contrast, the proposed point registration neural network (PR-Net) actively learns the registration pattern as a parametric function from a training dataset, consequently predict the desired geometric transformation to align a pair of point sets. PR-Net can transfer the learned knowledge (i.e. registration pattern) from registering training pairs to testing ones without additional iterative optimization. Specifically, in this paper, we develop novel techniques to learn shape descriptors from point sets that help formulate a clear correlation between source and target point sets. With the defined correlation, PR-Net tends to predict the transformation so that the source and target point sets can be statistically aligned, which in turn leads to an optimal spatial geometric registration. PR-Net achieves robust and superior performance for non-rigid registration of point sets, even in presence of Gaussian noise, outliers, and missing points, but requires much less time for registering large number of pairs. More importantly, for a new pair of point sets, PR-Net is able to directly predict the desired transformation using the learned model without repetitive iterative optimization routine. Our code is available at https://github.com/Lingjing324/PR-Net.