Aleix Boquet-Pujadas

Youssef Haouchat, Sepand Kashani, Aleix Boquet-Pujadas et al.

We propose a method to efficiently compute tomographic projections of a 3D volume represented by a linear combination of shifted B-splines. To do so, we propose a ray-tracing algorithm that computes 3D line integrals with arbitrary projection geometries. One of the components of our algorithm is a neural network that computes the contribution of the basis functions efficiently. In our experiments, we consider well-posed cases where the data are sufficient for accurate reconstruction without the need for regularization. We achieve higher reconstruction quality than traditional voxel-based methods.

Aleix Boquet-Pujadas, Pol del Aguila Pla, Michael Unser

We formulate an optimization problem to estimate probability densities in the context of multidimensional problems that are sampled with uneven probability. It considers detector sensitivity as an heterogeneous density and takes advantage of the computational speed and flexible boundary conditions offered by splines on a grid. We choose to regularize the Hessian of the spline via the nuclear norm to promote sparsity. As a result, the method is spatially adaptive and stable against the choice of the regularization parameter, which plays the role of the bandwidth. We test our computational pipeline on standard densities and provide software. We also present a new approach to PET rebinning as an application of our framework.

Aleix Boquet-Pujadas

Mechanobiology is gaining more and more traction as the fundamental role of physical forces in biological function becomes clearer. Forces at the microscale are often measured indirectly using inverse problems such as Traction Force Microscopy because biological experiments are hard to access with physical probes. In contrast with the experimental nature of biology and physics, these measurements do not come with error bars, confidence regions, or p-values. The aim of this manuscript is to publicize this issue and to propose a first step towards a remedy therefor in the form of a general reconstruction framework. We also show that this opens the door to hypothesis testing of seemingly abstract experimental questions.