Julien Volle

D. Darankoum, C. Habermacher, J. Volle et al.

Decoding the orchestration of neural activity in electroencephalography (EEG) signals is a central challenge in bridging neuroscience with artificial intelligence. Foundation models have made strides in generalized EEG decoding, yet many existing frameworks primarily relying on separate temporal and spectral masking of raw signals during self-supervised pretraining. Such strategies often tend to bias learning toward high-frequency oscillations, as low-frequency rhythmic patterns can be easily inferred from the unmasked signal. We introduce a foundation model that utilizes a novel Gaussian-smoothed masking scheme applied to short-time Fourier transform (STFT) maps. By jointly applying time, frequency, and time-frequency Gaussian masks, we make the reconstruction task much more challenging, forcing the model to learn intricate neural patterns across both high- and low-frequency domains. To effectively recover signals under this aggressive masking strategy, we design SpecHi-Net, a U-shaped hierarchical architecture with multiple encoding and decoding stages. To accelerate large-scale pretraining, we partition the data into three subsets, each used to train an independent expert model. We then combine these models through SpecMoE, a mixture of experts framework guided by a learned spectral gating mechanism. SpecMoE achieves state-of-the-art performance across a diverse set of EEG decoding tasks, including sleep staging, emotion recognition, motor imagery classification, abnormal signal detection, and drug effect prediction. Importantly, the model demonstrates strong cross-species and cross-subject generalization, maintaining high accuracy on both human and murine EEG datasets.

Davy Darankoum, Manon Villalba, Clelia Allioux et al.

Epilepsy represents the most prevalent neurological disease in the world. One-third of people suffering from mesial temporal lobe epilepsy (MTLE) exhibit drug resistance, urging the need to develop new treatments. A key part in anti-seizure medication (ASM) development is the capability of detecting and quantifying epileptic seizures occurring in electroencephalogram (EEG) signals, which is crucial for treatment efficacy evaluation. In this study, we introduced a seizure detection pipeline based on deep learning models applied to raw EEG signals. This pipeline integrates: a new pre-processing technique which segments continuous raw EEG signals without prior distinction between seizure and seizure-free activities; a post-processing algorithm developed to reassemble EEG segments and allow the identification of seizures start/end; and finally, a new evaluation procedure based on a strict seizure events comparison between predicted and real labels. Models training have been performed using a data splitting strategy which addresses the potential for data leakage. We demonstrated the fundamental differences between a seizure classification and a seizure detection task and showed the differences in performance between the two tasks. Finally, we demonstrated the generalization capabilities across species of our best architecture, combining a Convolutional Neural Network and a Transformer encoder. The model was trained on animal EEGs and tested on human EEGs with a F1-score of 93% on a balanced Bonn dataset.

D. Darankoum, C. Habermacher, J. Volle et al.

Electroencephalography signals (EEGs) contain rich multi-scale information crucial for understanding brain states, with potential applications in diagnosing and advancing the drug development landscape. However, extracting meaningful features from raw EEG signals while handling noise and channel variability remains a major challenge. This work proposes a novel end-to-end deep-learning framework that addresses these issues through several key innovations. First, we designed an encoder capable of explicitly capturing multi-scale frequency oscillations covering a wide range of features for different EEG-related tasks. Secondly, to model complex dependencies and handle the high temporal resolution of EEGs, we introduced an attention-based encoder that simultaneously learns interactions across EEG channels and within localized {\em patches} of individual channels. We integrated a dedicated gating network on top of the attention encoder to dynamically filter out noisy and non-informative channels, enhancing the reliability of EEG data. The entire encoding process is guided by a novel loss function, which leverages supervised and contrastive learning, significantly improving model generalization. We validated our approach in multiple applications, ranging from the classification of effects across multiple Central Nervous System (CNS) disorders treatments to the diagnosis of Parkinson's and Alzheimer's disease. Our results demonstrate that the proposed learning paradigm can extract biologically meaningful patterns from raw EEG signals across different species, autonomously select high-quality channels, and achieve robust generalization through innovative architectural and loss design.