Rakesh Shiradkar

Sydney Anuyah, Mehedi Mahmud Kaushik, Hao Dai et al.

Large Language Models (LLMs) generate fluent answers but can struggle with trustworthy, domain-specific reasoning. We evaluate whether domain knowledge graphs (KGs) improve Retrieval-Augmented Generation (RAG) for healthcare by constructing three PubMed-derived graphs: $\mathbb{G}_1$ (T2DM), $\mathbb{G}_2$ (Alzheimer's disease), and $\mathbb{G}_3$ (AD+T2DM). We design two probes: Probe 1 targets merged AD T2DM knowledge, while Probe 2 targets the intersection of $\mathbb{G}_1$ and $\mathbb{G}_2$. Seven instruction-tuned LLMs are tested across retrieval sources {No-RAG, $\mathbb{G}_1$, $\mathbb{G}_2$, $\mathbb{G}_1$ + $\mathbb{G}_2$, $\mathbb{G}_3$, $\mathbb{G}_1$+$\mathbb{G}_2$ + $\mathbb{G}_3$} and three decoding temperatures. Results show that scope alignment between probe and KG is decisive: precise, scope-matched retrieval (notably $\mathbb{G}_2$) yields the most consistent gains, whereas indiscriminate graph unions often introduce distractors that reduce accuracy. Larger models frequently match or exceed KG-RAG with a No-RAG baseline on Probe 1, indicating strong parametric priors, whereas smaller/mid-sized models benefit more from well-scoped retrieval. Temperature plays a secondary role; higher values rarely help. We conclude that precision-first, scope-matched KG-RAG is preferable to breadth-first unions, and we outline practical guidelines for graph selection, model sizing, and retrieval/reranking. Code and Data available here - https://github.com/sydneyanuyah/RAGComparison

Sydney Anuyah, Mehedi Mahmud Kaushik, Krishna Dwarampudi et al.

We introduce CoDe-KG, an open-source, end-to-end pipeline for extracting sentence-level knowledge graphs by combining robust coreference resolution with syntactic sentence decomposition. Using our model, we contribute a dataset of over 150,000 knowledge triples, which is open source. We also contribute a training corpus of 7248 rows for sentence complexity, 190 rows of gold human annotations for co-reference resolution using open source lung-cancer abstracts from PubMed, 900 rows of gold human annotations for sentence conversion policies, and 398 triples of gold human annotations. We systematically select optimal prompt-model pairs across five complexity categories, showing that hybrid chain-of-thought and few-shot prompting yields up to 99.8% exact-match accuracy on sentence simplification. On relation extraction (RE), our pipeline achieves 65.8% macro-F1 on REBEL, an 8-point gain over the prior state of the art, and 75.7% micro-F1 on WebNLG2, while matching or exceeding performance on Wiki-NRE and CaRB. Ablation studies demonstrate that integrating coreference and decomposition increases recall on rare relations by over 20%. Code and dataset are available at https://github.com/KaushikMahmud/CoDe-KG_EMNLP_2025

Suhang You, Carla Pitarch-Abaigar, Sanket Kachole et al.

Almost 30% of prostate cancer (PCa) patients undergoing radical prostatectomy (RP) experience biochemical recurrence (BCR), characterized by increased prostate specific antigen (PSA) and associated with increased mortality. Accurate early prediction of BCR, at the time of RP, would contribute to prompt adaptive clinical decision-making and improved patient outcomes. In this work, we propose prostate cancer BCR prediction via fused multi-modal embeddings (PROFUSEme), which learns cross-modal interactions of clinical, radiology, and pathology data, following an intermediate fusion configuration in combination with Cox Proportional Hazard regressors. Quantitative evaluation of our proposed approach reveals superior performance, when compared with late fusion configurations, yielding a mean C-index of 0.861 ($σ=0.112$) on the internal 5-fold nested cross-validation framework, and a C-index of 0.7107 on the hold out data of CHIMERA 2025 challenge validation leaderboard.