Kim Tallaksen Halvorsen

Anil Osman Tur, Tonje Knutsen Sordalen, Kim Tallaksen Halvorsen et al.

Long-term animal re-identification (ReID) must remain robust to gradual morphological evolution and seasonal appearance shifts. Although recent vision-language models provide strong pretrained visual representations, adapting them to longitudinal ecological settings remains challenging, particularly under identity and temporal distribution shifts. We present a parameter-efficient CLIP adaptation framework for animal ReID and introduce a continuous metadata-conditioning mechanism that incorporates numerical attributes directly into the prompt representation during training. While low-rank visual adaptation, prompt-based supervision, and cross-modal alignment provide the adaptation framework, the proposed metadata-conditioning strategy constitutes the primary methodological contribution. By preserving the continuous structure of numerical metadata rather than discretizing it into textual categories, the proposed approach enables smooth modulation of the embedding space during training while maintaining a purely visual inference pipeline. Experiments on a seven-year longitudinal fish dataset and multiple wildlife benchmarks demonstrate improved performance under closed-set, open-set, and time-aware evaluation protocols. The results demonstrate that continuous metadata conditioning improves robustness to longitudinal appearance variation and temporal distribution shifts, while parameter-efficient adaptation enables a purely visual inference pipeline without requiring metadata at test time. Code and evaluation splits can be found at: https://github.com/AnilOsmanTur/MetaPrompt-ReID.

Ørjan Langøy Olsen, Tonje Knutsen Sørdalen, Morten Goodwin et al.

In both terrestrial and marine ecology, physical tagging is a frequently used method to study population dynamics and behavior. However, such tagging techniques are increasingly being replaced by individual re-identification using image analysis. This paper introduces a contrastive learning-based model for identifying individuals. The model uses the first parts of the Inception v3 network, supported by a projection head, and we use contrastive learning to find similar or dissimilar image pairs from a collection of uniform photographs. We apply this technique for corkwing wrasse, Symphodus melops, an ecologically and commercially important fish species. Photos are taken during repeated catches of the same individuals from a wild population, where the intervals between individual sightings might range from a few days to several years. Our model achieves a one-shot accuracy of 0.35, a 5-shot accuracy of 0.56, and a 100-shot accuracy of 0.88, on our dataset.

Morten Goodwin, Kim Tallaksen Halvorsen, Lei Jiao et al.

The deep learning revolution is touching all scientific disciplines and corners of our lives as a means of harnessing the power of big data. Marine ecology is no exception. These new methods provide analysis of data from sensors, cameras, and acoustic recorders, even in real time, in ways that are reproducible and rapid. Off-the-shelf algorithms can find, count, and classify species from digital images or video and detect cryptic patterns in noisy data. Using these opportunities requires collaboration across ecological and data science disciplines, which can be challenging to initiate. To facilitate these collaborations and promote the use of deep learning towards ecosystem-based management of the sea, this paper aims to bridge the gap between marine ecologists and computer scientists. We provide insight into popular deep learning approaches for ecological data analysis in plain language, focusing on the techniques of supervised learning with deep neural networks, and illustrate challenges and opportunities through established and emerging applications of deep learning to marine ecology. We use established and future-looking case studies on plankton, fishes, marine mammals, pollution, and nutrient cycling that involve object detection, classification, tracking, and segmentation of visualized data. We conclude with a broad outlook of the field's opportunities and challenges, including potential technological advances and issues with managing complex data sets.

Kristian Muri Knausgård, Arne Wiklund, Tonje Knutsen Sørdalen et al.

A wide range of applications in marine ecology extensively uses underwater cameras. Still, to efficiently process the vast amount of data generated, we need to develop tools that can automatically detect and recognize species captured on film. Classifying fish species from videos and images in natural environments can be challenging because of noise and variation in illumination and the surrounding habitat. In this paper, we propose a two-step deep learning approach for the detection and classification of temperate fishes without pre-filtering. The first step is to detect each single fish in an image, independent of species and sex. For this purpose, we employ the You Only Look Once (YOLO) object detection technique. In the second step, we adopt a Convolutional Neural Network (CNN) with the Squeeze-and-Excitation (SE) architecture for classifying each fish in the image without pre-filtering. We apply transfer learning to overcome the limited training samples of temperate fishes and to improve the accuracy of the classification. This is done by training the object detection model with ImageNet and the fish classifier via a public dataset (Fish4Knowledge), whereupon both the object detection and classifier are updated with temperate fishes of interest. The weights obtained from pre-training are applied to post-training as a priori. Our solution achieves the state-of-the-art accuracy of 99.27\% on the pre-training. The percentage values for accuracy on the post-training are good; 83.68\% and 87.74\% with and without image augmentation, respectively, indicating that the solution is viable with a more extensive dataset.