NCNov 14, 2025
Inferring response times of perceptual decisions with Poisson variational autoencodersHayden R. Johnson, Anastasia N. Krouglova, Hadi Vafaii et al.
Many properties of perceptual decision making are well-modeled by deep neural networks. However, such architectures typically treat decisions as instantaneous readouts, overlooking the temporal dynamics of the decision process. We present an image-computable model of perceptual decision making in which choices and response times arise from efficient sensory encoding and Bayesian decoding of neural spiking activity. We use a Poisson variational autoencoder to learn unsupervised representations of visual stimuli in a population of rate-coded neurons, modeled as independent homogeneous Poisson processes. A task-optimized decoder then continually infers an approximate posterior over actions conditioned on incoming spiking activity. Combining these components with an entropy-based stopping rule yields a principled and image-computable model of perceptual decisions capable of generating trial-by-trial patterns of choices and response times. Applied to MNIST digit classification, the model reproduces key empirical signatures of perceptual decision making, including stochastic variability, right-skewed response time distributions, logarithmic scaling of response times with the number of alternatives (Hick's law), and speed-accuracy trade-offs.
MLFeb 12, 2025
Multifidelity Simulation-based Inference for Computationally Expensive SimulatorsAnastasia N. Krouglova, Hayden R. Johnson, Basile Confavreux et al.
Across many domains of science, stochastic models are an essential tool to understand the mechanisms underlying empirically observed data. Models can be of different levels of detail and accuracy, with models of high-fidelity (i.e., high accuracy) to the phenomena under study being often preferable. However, inferring parameters of high-fidelity models via simulation-based inference is challenging, especially when the simulator is computationally expensive. We introduce MF-(TS)NPE, a multifidelity approach to neural posterior estimation that uses transfer learning to leverage inexpensive low-fidelity simulations to efficiently infer parameters of high-fidelity simulators. MF-(TS)NPE applies the multifidelity scheme to both amortized and non-amortized neural posterior estimation. We further improve simulation efficiency by introducing A-MF-TSNPE, a sequential variant that uses an acquisition function targeting the predictive uncertainty of the density estimator to adaptively select high-fidelity parameters. On established benchmark and neuroscience tasks, our approaches require up to two orders of magnitude fewer high-fidelity simulations than current methods, while showing comparable performance. Overall, our approaches open new opportunities to perform efficient Bayesian inference on computationally expensive simulators.