Xiaoyu Zheng

Xiaoyu Zheng, Xu Chen, Awais Rauf et al.

Ultrasound (US) is one of the most widely used medical imaging modalities, thanks to its low cost, portability, real-time feedback, and absence of ionizing radiation. However, US image interpretation remains highly operator-dependent and varies significantly across anatomical regions, acquisition protocols, and device types. These variations, along with unique challenges such as speckle, low contrast, and limited standardized annotations, hinder the development of generalizable, label-efficient ultrasound AI models. In this paper, we propose OpenUS, the first reproducible, open-source ultrasound foundation model built on a large collection of public data. OpenUS employs a vision Mamba backbone, capturing both local and global long-range dependencies across the image. To extract rich features during pre-training, we introduce a novel self-adaptive masking framework that combines contrastive learning with masked image modeling. This strategy integrates the teacher's attention map with student reconstruction loss, adaptively refining clinically-relevant masking to enhance pre-training effectiveness. OpenUS also applies a dynamic learning schedule to progressively adjust the difficulty of the pre-training process. To develop the foundation model, we compile the largest to-date public ultrasound dataset comprising over 308K images from 42 publicly available datasets, covering diverse anatomical regions, institutions, imaging devices, and disease types. Our pre-trained OpenUS model can be easily adapted to specific downstream tasks by serving as a backbone for label-efficient fine-tuning. Code is available at https://github.com/XZheng0427/OpenUS.

Chen Xie, Ciyun Lin, Xiaoyu Zheng et al.

Understanding and predicting pedestrian crossing behavioral intention is crucial for the driving safety of autonomous vehicles. Nonetheless, challenges emerge when using promising images or environmental context masks to extract various factors for time-series network modeling, causing pre-processing errors or a loss of efficiency. Typically, pedestrian positions captured by onboard cameras are often distorted and do not accurately reflect their actual movements. To address these issues, GTransPDM -- a Graph-embedded Transformer with a Position Decoupling Module -- was developed for pedestrian crossing intention prediction by leveraging multi-modal features. First, a positional decoupling module was proposed to decompose pedestrian lateral motion and encode depth cues in the image view. Then, a graph-embedded Transformer was designed to capture the spatio-temporal dynamics of human pose skeletons, integrating essential factors such as position, skeleton, and ego-vehicle motion. Experimental results indicate that the proposed method achieves 92% accuracy on the PIE dataset and 87% accuracy on the JAAD dataset, with a processing speed of 0.05ms. It outperforms the state-of-the-art in comparison.

Qitong Li, Raj Nileshbhai Dave, Rhema Amanda Phiri et al.

Rapid environmental change and advances in data-driven analysis highlight the need not only to use computational tools, but also to foster understanding of the natural world and inspire creativity. Photosynthesis, the process that fuels nearly all life on Earth, provides a compelling context for such learning, particularly in understanding how plants alter their photosynthetic strategies in response to environmental changes. However, existing tools for studying photosynthesis are often inaccessible or limited to demonstrating its presence, rather than capturing its temporal dynamics. We present PhytoBits, a frugal in situ gas-exchange sensing toolkit for distinguishing and teaching photosynthetic strategies. PhytoBits combines leaf enclosure with accessible materials, an off-the-shelf CO\textsubscript{2} sensor, and a low-cost microcontroller, to support multi-day monitoring of plant gas-exchange in educational and research contexts. We validated PhytoBits against research-grade gas-exchange systems, confirming that it identifies C\textsubscript{3} and CAM (Crassulacean Acid Metabolism) photosynthetic pathways. In addition to obligate CAM, PhytoBits also resolves facultative CAM and developmental CAM dynamics in plants. This work presents an early-stage hardware validation; user deployment studies, open-source code dissemination, and automated pathway classification are planned as future work.

Haidong Hu, Xiaoyu Zheng, Jin Zhou et al.

Deep clustering methods typically rely on a single, well-defined representation for clustering. In contrast, pretrained diffusion models provide abundant and diverse multi-scale representations across network layers and noise timesteps. However, a key challenge is how to efficiently identify the most clustering-friendly representation in the layer*timestep space. To address this issue, we propose Diffusion Embedded Clustering (DiEC), an unsupervised framework that performs clustering by leveraging optimal intermediate representations from pretrained diffusion models. DiEC systematically evaluates the clusterability of representations along the trajectory of network depth and noise timesteps. Meanwhile, an unsupervised search strategy is designed for recognizing the Clustering-optimal Layer (COL) and Clustering-optimal Timestep (COT) in the layer*timestep space of pretrained diffusion models, aiming to promote clustering performance and reduce computational overhead. DiEC is fine-tuned primarily with a structure-preserving DEC-style KL-divergence objective at the fixed COL + COT, together with a random-timestep diffusion denoising objective to maintain the generative capability of the pretrained model. Without relying on augmentation-based consistency constraints or contrastive learning, DiEC achieves excellent clustering performance across multiple benchmark datasets.

Xiaoyu Zheng, Xu Chen, Shaogang Gong et al.

Compared to single view medical image classification, using multiple views can significantly enhance predictive accuracy as it can account for the complementarity of each view while leveraging correlations between views. Existing multi-view approaches typically employ separate convolutional or transformer branches combined with simplistic feature fusion strategies. However, these approaches inadvertently disregard essential cross-view correlations, leading to suboptimal classification performance, and suffer from challenges with limited receptive field (CNNs) or quadratic computational complexity (transformers). Inspired by state space sequence models, we propose XFMamba, a pure Mamba-based cross-fusion architecture to address the challenge of multi-view medical image classification. XFMamba introduces a novel two-stage fusion strategy, facilitating the learning of single-view features and their cross-view disparity. This mechanism captures spatially long-range dependencies in each view while enhancing seamless information transfer between views. Results on three public datasets, MURA, CheXpert and DDSM, illustrate the effectiveness of our approach across diverse multi-view medical image classification tasks, showing that it outperforms existing convolution-based and transformer-based multi-view methods. Code is available at https://github.com/XZheng0427/XFMamba.

Ya-Qi Yu, Minghui Liao, Jihao Wu et al.

Multimodal Large Language Models (MLLMs) have shown impressive results on various multimodal tasks. However, most existing MLLMs are not well suited for document-oriented tasks, which require fine-grained image perception and information compression. In this paper, we present TextHawk, a MLLM that is specifically designed for document-oriented tasks, while preserving the general capabilities of MLLMs. TextHawk is aimed to explore efficient fine-grained perception by designing four dedicated components. Firstly, a ReSampling and ReArrangement (ReSA) module is proposed to reduce the redundancy in the document texts and lower the computational cost of the MLLM. We explore encoding the positions of each local feature by presenting Scalable Positional Embeddings (SPEs), which can preserve the scalability of various image sizes. A Query Proposal Network (QPN) is then adopted to initialize the queries dynamically among different sub-images. To further enhance the fine-grained visual perceptual ability of the MLLM, we design a Multi-Level Cross-Attention (MLCA) mechanism that captures the hierarchical structure and semantic relations of document images. Furthermore, we create a new instruction-tuning dataset for document-oriented tasks by enriching the multimodal document data with Gemini Pro. We conduct extensive experiments on both general and document-oriented MLLM benchmarks, and show that TextHawk outperforms the state-of-the-art methods, demonstrating its effectiveness and superiority in fine-grained document perception and general abilities.

Xiaoyu Zheng, Xu Tian, Bin Jiao et al.

Patients with dementia typically exhibit cognitive impairment, which is routinely assessed using the Mini-Mental State Examination (MMSE). Concurrently, their underlying neurophysiological abnormalities are reflected in Electroencephalography (EEG), providing a basis for joint modeling. However, traditional multi-task approaches suffer from feature entanglement, which leads to inter-task interference when handling heterogeneous objectives.To address this challenge, we propose a task-guided spatiotemporal network (TGSN) with diffusion augmentation for EEG-based dementia diagnosis and MMSE prediction. Specifically, TGSN integrates a multi-band feature fusion module to capture complementary spectral information from EEG. Meanwhile, a pre-trained data augmentation module utilizing a diffusion process is introduced toincrease sample diversity. To model the complex spatiotemporal patterns of EEG, we propose a gated spatiotemporal attention module that captures long-range spatial dependencies and temporal dynamics. Moreover, we design a task-guided query module to achieve task-specific feature extraction, thereby mitigating task interference. The effectiveness of TGSN is evaluated on the XY02 dataset. Experimental results demonstrate that the proposed network outperforms several state-of-the-art methods, achieving classification accuracies of 97.78\% for Alzheimer's Disease (AD)/Frontotemporal Dementia (FTD) and 83.93\% for AD/FTD/Vascular Cognitive Impairment (VCI), which exceed the best baselines by 16.39\% and 8.28\%, respectively. In parallel, it reduces the RMSE for MMSE prediction to 1.93 and 2.38, achieving significant error reductions of 1.44 and 1.43 compared to the best baselines. Additionally, validation on the DS004504 dataset demonstrates strong cross-dataset generalization...

Xiaoyu Zheng, Jing Wen, Jiaxin Zhuang et al.

Polarization, as a new optical imaging tool, has been explored to assist in the diagnosis of pathology. Moreover, converting the polarimetric Mueller Matrix (MM) to standardized stained images becomes a promising approach to help pathologists interpret the results. However, existing methods for polarization-based virtual staining are still in the early stage, and the diffusion-based model, which has shown great potential in enhancing the fidelity of the generated images, has not been studied yet. In this paper, a Regulated Bridge Diffusion Model (RBDM) for polarization-based virtual staining is proposed. RBDM utilizes the bidirectional bridge diffusion process to learn the mapping from polarization images to other modalities such as H\&E and fluorescence. And to demonstrate the effectiveness of our model, we conduct the experiment on our manually collected dataset, which consists of 18,000 paired polarization, fluorescence and H\&E images, due to the unavailability of the public dataset. The experiment results show that our model greatly outperforms other benchmark methods. Our dataset and code will be released upon acceptance.

Yao Du, Jiaxin Zhuang, Xiaoyu Zheng et al.

Histopathology image analysis is fundamental to digital pathology, with hematoxylin and eosin (H&E) staining as the gold standard for diagnostic and prognostic assessments. While H&E imaging effectively highlights cellular and tissue structures, it lacks sensitivity to birefringence and tissue anisotropy, which are crucial for assessing collagen organization, fiber alignment, and microstructural alterations--key indicators of tumor progression, fibrosis, and other pathological conditions. To bridge this gap, we construct a polarization imaging system and curate a new dataset of over 13,000 paired Polar-H&E images. Visualizations of polarization properties reveal distinctive optical signatures in pathological tissues, underscoring its diagnostic value. Building on this dataset, we propose PolarHE, a dual-modality fusion framework that integrates H&E with polarization imaging, leveraging the latter ability to enhance tissue characterization. Our approach employs a feature decomposition strategy to disentangle common and modality specific features, ensuring effective multimodal representation learning. Through comprehensive validation, our approach significantly outperforms previous methods, achieving an accuracy of 86.70% on the Chaoyang dataset and 89.06% on the MHIST dataset. These results demonstrate that polarization imaging is a powerful and underutilized modality in computational pathology, enriching feature representation and improving diagnostic accuracy. PolarHE establishes a promising direction for multimodal learning, paving the way for more interpretable and generalizable pathology models.

Xiaoyu Zheng, Sijung Hu, Vincent Dwyer et al.

Opto-physiological monitoring including photoplethysmography (PPG) provides non-invasive cardiac and respiratory measurements, yet motion artefacts (MAs) during physical activity degrade its signal quality and downstream estimation concurrently. An attention-mechanism-based generative adversarial network (AM-GAN) was proposed to model motion artefacts and mitigate their impact on raw PPG signals. The AM-GAN learns how to transform motion-affected PPG into artefact-reduced waveforms to align with triaxial acceleration signals corresponding to artefact components gained from a triaxial accelerometer. The AM-GAN has been validated across four experimental protocols with 43 participants performing activities from low to high intensity (6--12km/h). With the public datasets, the AM-GAN achieves mean absolute error (MAE) for heart rate (HR) of 1.81 beats/min on IEEE-SPC and 3.86 beats/min on PPGDalia. On the in-house LU dataset, it shows the MAEs < 1.37 beats/min for HR and 2.49 breaths/min for respiratory rate (RR). A further in-house C2 dataset with three oxygen levels (16%, 18%, and 21%) was applied in the AM-GAN to attain a MAE of 1.65% for SpO2. The outcome demonstrates that the AM-GAN offers a robust and reliable physiological estimation under various intensities of physical activity.

Hong Zhu, Ian Bayley, Dongmei Liu et al.

This paper presents an automated tool called Morphy for datamorphic testing. It classifies software test artefacts into test entities and test morphisms, which are mappings on testing entities. In addition to datamorphisms, metamorphisms and seed test case makers, Morphy also employs a set of other test morphisms including test case metrics and filters, test set metrics and filters, test result analysers and test executers to realise test automation. In particular, basic testing activities can be automated by invoking test morphisms. Test strategies can be realised as complex combinations of test morphisms. Test processes can be automated by recording, editing and playing test scripts that invoke test morphisms and strategies. Three types of test strategies have been implemented in Morphy: datamorphism combination strategies, cluster border exploration strategies and strategies for test set optimisation via genetic algorithms. This paper focuses on the datamorphism combination strategies by giving their definitions and implementation algorithms. The paper also illustrates their uses for testing both traditional software and AI applications with three case studies.

Kenji Kawaguchi, Yu Maruyama, Xiaoyu Zheng

This paper considers global optimization with a black-box unknown objective function that can be non-convex and non-differentiable. Such a difficult optimization problem arises in many real-world applications, such as parameter tuning in machine learning, engineering design problem, and planning with a complex physics simulator. This paper proposes a new global optimization algorithm, called Locally Oriented Global Optimization (LOGO), to aim for both fast convergence in practice and finite-time error bound in theory. The advantage and usage of the new algorithm are illustrated via theoretical analysis and an experiment conducted with 11 benchmark test functions. Further, we modify the LOGO algorithm to specifically solve a planning problem via policy search with continuous state/action space and long time horizon while maintaining its finite-time error bound. We apply the proposed planning method to accident management of a nuclear power plant. The result of the application study demonstrates the practical utility of our method.