Xiang Lin

Shankar Kantharaj, Rixie Tiffany Ko Leong, Xiang Lin et al.

Charts are commonly used for exploring data and communicating insights. Generating natural language summaries from charts can be very helpful for people in inferring key insights that would otherwise require a lot of cognitive and perceptual efforts. We present Chart-to-text, a large-scale benchmark with two datasets and a total of 44,096 charts covering a wide range of topics and chart types. We explain the dataset construction process and analyze the datasets. We also introduce a number of state-of-the-art neural models as baselines that utilize image captioning and data-to-text generation techniques to tackle two problem variations: one assumes the underlying data table of the chart is available while the other needs to extract data from chart images. Our analysis with automatic and human evaluation shows that while our best models usually generate fluent summaries and yield reasonable BLEU scores, they also suffer from hallucinations and factual errors as well as difficulties in correctly explaining complex patterns and trends in charts.

MiroMind Team, Song Bai, Lidong Bing et al.

We present MiroThinker v1.0, an open-source research agent designed to advance tool-augmented reasoning and information-seeking capabilities. Unlike previous agents that only scale up model size or context length, MiroThinker explores interaction scaling at the model level, systematically training the model to handle deeper and more frequent agent-environment interactions as a third dimension of performance improvement. Unlike LLM test-time scaling, which operates in isolation and risks degradation with longer reasoning chains, interactive scaling leverages environment feedback and external information acquisition to correct errors and refine trajectories. Through reinforcement learning, the model achieves efficient interaction scaling: with a 256K context window, it can perform up to 600 tool calls per task, enabling sustained multi-turn reasoning and complex real-world research workflows. Across four representative benchmarks-GAIA, HLE, BrowseComp, and BrowseComp-ZH-the 72B variant achieves up to 81.9%, 37.7%, 47.1%, and 55.6% accuracy respectively, surpassing previous open-source agents and approaching commercial counterparts such as GPT-5-high. Our analysis reveals that MiroThinker benefits from interactive scaling consistently: research performance improves predictably as the model engages in deeper and more frequent agent-environment interactions, demonstrating that interaction depth exhibits scaling behaviors analogous to model size and context length. These findings establish interaction scaling as a third critical dimension for building next-generation open research agents, complementing model capacity and context windows.

Ziqi Jin, Bin Wang, Xiang Lin et al.

Diffusion models offer appealing properties for language generation, such as parallel decoding and iterative refinement, but the discrete and highly structured nature of text challenges the direct application of diffusion principles. In this paper, we revisit diffusion language modeling from the view of diffusion process and language modeling, and outline five properties that separate diffusion mechanics from language-specific requirements. We first categorize existing approaches into continuous diffusion in embedding space and discrete diffusion over tokens. We then show that each satisfies only part of the five essential properties and therefore reflects a structural trade-off. Through analyses of recent large diffusion language models, we identify two central issues: (i) uniform corruption does not respect how information is distributed across positions, and (ii) token-wise marginal training cannot capture multi-token dependencies during parallel decoding. These observations motivate diffusion processes that align more closely with the structure of text, and encourage future work toward more coherent diffusion language models.

Xiang Lin, Prathyusha Jwalapuram, Shafiq Joty

State-of-the-art neural text generation models are typically trained to maximize the likelihood of each token in the ground-truth sequence conditioned on the previous target tokens. However, during inference, the model needs to make a prediction conditioned on the tokens generated by itself. This train-test discrepancy is referred to as exposure bias. Scheduled sampling is a curriculum learning strategy that gradually exposes the model to its own predictions during training to mitigate this bias. Most of the proposed approaches design a scheduler based on training steps, which generally requires careful tuning depending on the training setup. In this work, we introduce Dynamic Scheduled Sampling with Imitation Loss (DySI), which maintains the schedule based solely on the training time accuracy, while enhancing the curriculum learning by introducing an imitation loss, which attempts to make the behavior of the decoder indistinguishable from the behavior of a teacher-forced decoder. DySI is universally applicable across training setups with minimal tuning. Extensive experiments and analysis show that DySI not only achieves notable improvements on standard machine translation benchmarks, but also significantly improves the robustness of other text generation models.

Chengcheng Sun, Chenhao Li, Xiang Lin et al.

Graph neural networks (GNNs) aim to learn well-trained representations in a lower-dimension space for downstream tasks while preserving the topological structures. In recent years, attention mechanism, which is brilliant in the fields of natural language processing and computer vision, is introduced to GNNs to adaptively select the discriminative features and automatically filter the noisy information. To the best of our knowledge, due to the fast-paced advances in this domain, a systematic overview of attention-based GNNs is still missing. To fill this gap, this paper aims to provide a comprehensive survey on recent advances in attention-based GNNs. Firstly, we propose a novel two-level taxonomy for attention-based GNNs from the perspective of development history and architectural perspectives. Specifically, the upper level reveals the three developmental stages of attention-based GNNs, including graph recurrent attention networks, graph attention networks, and graph transformers. The lower level focuses on various typical architectures of each stage. Secondly, we review these attention-based methods following the proposed taxonomy in detail and summarize the advantages and disadvantages of various models. A model characteristics table is also provided for a more comprehensive comparison. Thirdly, we share our thoughts on some open issues and future directions of attention-based GNNs. We hope this survey will provide researchers with an up-to-date reference regarding applications of attention-based GNNs. In addition, to cope with the rapid development in this field, we intend to share the relevant latest papers as an open resource at https://github.com/sunxiaobei/awesome-attention-based-gnns.

Chong Zhang, Yue Deng, Xiang Lin et al.

The recent development of reasoning language models (RLMs) represents a novel evolution in large language models. In particular, the recent release of DeepSeek-R1 has generated widespread social impact and sparked enthusiasm in the research community for exploring the explicit reasoning paradigm of language models. However, the implementation details of the released models have not been fully open-sourced by DeepSeek, including DeepSeek-R1-Zero, DeepSeek-R1, and the distilled small models. As a result, many replication studies have emerged aiming to reproduce the strong performance achieved by DeepSeek-R1, reaching comparable performance through similar training procedures and fully open-source data resources. These works have investigated feasible strategies for supervised fine-tuning (SFT) and reinforcement learning from verifiable rewards (RLVR), focusing on data preparation and method design, yielding various valuable insights. In this report, we provide a summary of recent replication studies to inspire future research. We primarily focus on SFT and RLVR as two main directions, introducing the details for data construction, method design and training procedure of current replication studies. Moreover, we conclude key findings from the implementation details and experimental results reported by these studies, anticipating to inspire future research. We also discuss additional techniques of enhancing RLMs, highlighting the potential of expanding the application scope of these models, and discussing the challenges in development. By this survey, we aim to help researchers and developers of RLMs stay updated with the latest advancements, and seek to inspire new ideas to further enhance RLMs.

Xingxuan Li, Yao Xiao, Dianwen Ng et al.

Large language models have recently evolved from fluent text generation to advanced reasoning across diverse domains, giving rise to reasoning language models. Among these domains, mathematical reasoning serves as a representative benchmark as it requires precise multi-step logic and abstract reasoning, which can be generalized to other tasks. While closed-source RLMs such as GPT-o3 demonstrate impressive reasoning capabilities, their proprietary nature limits transparency and reproducibility. Although many open-source projects aim to close this gap, most of them lack sufficient openness by omitting critical resources such as datasets and detailed training configurations, which hinders reproducibility. To contribute toward greater transparency in RLM development, we introduce the MiroMind-M1 series, a set of fully open-source RLMs built on the Qwen-2.5 backbone that match or exceed the performance of existing open-source RLMs. Specifically, our models are trained in two stages: SFT on a carefully curated corpus of 719K math-reasoning problems with verified CoT trajectories, followed by RLVR on 62K challenging and verifiable problems. To enhance the robustness and efficiency of the RLVR process, we introduce Context-Aware Multi-Stage Policy Optimization, an algorithm that integrates length-progressive training with an adaptive repetition penalty to encourage context-aware RL training. Our model achieves state-of-the-art or competitive performance and superior token efficiency among Qwen-2.5-based open-source 7B and 32B models on the AIME24, AIME25, and MATH benchmarks. To facilitate reproducibility, we release the complete stack: models (MiroMind-M1-SFT-7B, MiroMind-M1-RL-7B, MiroMind-M1-RL-32B); datasets (MiroMind-M1-SFT-719K, MiroMind-M1-RL-62K); and all training and evaluation configurations. We hope these resources will support further research and foster community advancement.

Xiang Lin, Weixin Li, Shu Guo et al.

Pre-trained Vision-Language Models (VLMs), \textit{e.g.} CLIP, have become essential tools in multimodal transfer learning. However, fine-tuning VLMs in few-shot scenarios poses significant challenges in balancing task-specific adaptation and generalization in the obtained model. Meanwhile, current researches have predominantly focused on prompt-based adaptation methods, leaving adapter-based approaches underexplored and revealing notable performance gaps. To address these challenges, we introduce a novel Reconstruction-based Multimodal Adapter (RMAdapter), which leverages a dual-branch architecture. Unlike conventional single-branch adapters, RMAdapter consists of: (1) an adaptation branch that injects task-specific knowledge through parameter-efficient fine-tuning, and (2) a reconstruction branch that preserves general knowledge by reconstructing latent space features back into the original feature space. This design facilitates a dynamic balance between general and task-specific knowledge. Importantly, although RMAdapter introduces an additional reconstruction branch, it is carefully optimized to remain lightweight. By computing reconstruction loss locally at each layer and sharing projection modules, the overall computational overhead is kept minimal. A consistency constraint is also incorporated to better regulate the trade-off between discriminability and generalization. We comprehensively evaluate the effectiveness of RMAdapter on three representative tasks: generalization to new categories, generalization to new target datasets, and domain generalization. Without relying on data augmentation or duplicate prompt designs, our RMAdapter consistently outperforms state-of-the-art approaches across all evaluation metrics.

Zhen Zhang, Liangcai Su, Zhuo Chen et al.

Deep research agents have achieved remarkable progress on complex information seeking tasks. Even long ReAct style rollouts explore only a single trajectory, while recent state of the art systems scale inference time compute via parallel search and aggregation. Yet deep research answers are composed of complementary pieces of evidence, which parallel rollouts often duplicate rather than complete, yielding diminishing returns while pushing the aggregation context toward the model's limit. We propose Argus, an agentic system in which a Searcher and a Navigator cooperate to treat deep research as assembling a jigsaw from complementary evidence pieces, rather than brute forcing the whole answer in parallel. The Searcher collects evidence traces for a given sub-query through ReAct-style interaction. The Navigator maintains a shared evidence graph, verifying which pieces are still missing, dispatching Searchers to gather them, and reasoning over the completed graph to produce a source-traced final answer. We train the Navigator with reinforcement learning to verify, dispatch, and synthesize, while independently training the Searcher to remain a standard ReAct agent. The resulting Navigator supports rollouts with a single Searcher or many in parallel without retraining. With both Searcher and Navigator built on a 35B-A3B MoE backbone, Argus gains 5.5 points with a single Searcher and 12.7 points with 8 parallel Searchers, averaged over eight benchmarks. With 64 Searchers it reaches 86.2 on BrowseComp, surpassing every proprietary agent we benchmark, while the Navigator's reasoning context stays under 21.5K tokens.

Boyang Fu, George Dasoulas, Sameer Gabbita et al.

Predicting how genetic perturbations change cellular state is a core problem for building controllable models of gene regulation. Perturbations targeting the same gene can produce different transcriptional responses depending on their genomic locus, including different transcription start sites and regulatory elements. Gene-level perturbation models collapse these distinct interventions into the same representation. We introduce STRAND, a generative model that predicts single-cell transcriptional responses by conditioning on regulatory DNA sequence. STRAND represents a perturbation by encoding the sequence at its genomic locus and uses this representation to parameterize a conditional transport process from control to perturbed cell states. Representing perturbations by sequence, rather than by a fixed set of gene identifiers, supports zero-shot inference at loci not seen during training and expands inference-time genomic coverage from ~1.5% for gene-level single-cell foundation models to ~95% of the genome. We evaluate STRAND on CRISPR perturbation datasets in K562, Jurkat, and RPE1 cells. STRAND improves discrimination scores by up to 33% in low-sample regimes, achieves the best average rank on unseen gene perturbation benchmarks, and improves transfer to novel cell lines by up to 0.14 in Pearson correlation. Ablations isolate the gains to sequence conditioning and transport, and case studies show that STRAND resolves functionally alternative transcription start sites missed by gene-level models.

Zhenglun Kong, Mufan Qiu, John Boesen et al.

Understanding how cellular morphology, gene expression, and spatial organization jointly shape tissue function is a central challenge in biology. Image-based spatial transcriptomics technologies now provide high-resolution measurements of cell images and gene expression profiles, but machine learning methods typically analyze these modalities in isolation or at limited resolution. We address the problem of learning unified, spatially aware representations that integrate cell morphology, gene expression, and spatial context across biological scales. This requires models that can operate at single-cell resolution, reason across spatial neighborhoods, and generalize to whole-slide tissue organization. Here, we introduce SPATIA, a multi-scale generative and predictive model for spatial transcriptomics. SPATIA learns cell-level embeddings by fusing image-derived morphological tokens and transcriptomic vector tokens using cross-attention and then aggregates them at niche and tissue levels using transformer modules to capture spatial dependencies. SPATIA incorporates token merging in its generative diffusion decoder to synthesize high-resolution cell images conditioned on gene expression. We assembled a multi-scale dataset consisting of 17 million cell-gene pairs, 1 million niche-gene pairs, and 10,000 tissue-gene pairs across 49 donors, 17 tissue types, and 12 disease states. We benchmark SPATIA against 13 existing models across 12 individual tasks, which span several categories including cell annotation, cell clustering, gene imputation, cross-modal prediction, and image generation. SPATIA achieves improved performance over all baselines and generates realistic cell morphologies that reflect transcriptomic perturbations.

Prathyusha Jwalapuram, Shafiq Joty, Xiang Lin

Given the claims of improved text generation quality across various pre-trained neural models, we consider the coherence evaluation of machine generated text to be one of the principal applications of coherence models that needs to be investigated. Prior work in neural coherence modeling has primarily focused on devising new architectures for solving the permuted document task. We instead use a basic model architecture and show significant improvements over state of the art within the same training regime. We then design a harder self-supervision objective by increasing the ratio of negative samples within a contrastive learning setup, and enhance the model further through automatic hard negative mining coupled with a large global negative queue encoded by a momentum encoder. We show empirically that increasing the density of negative samples improves the basic model, and using a global negative queue further improves and stabilizes the model while training with hard negative samples. We evaluate the coherence model on task-independent test sets that resemble real-world applications and show significant improvements in coherence evaluations of downstream tasks.

Xiang Lin, Simeng Han, Shafiq Joty

Advanced large-scale neural language models have led to significant success in many language generation tasks. However, the most commonly used training objective, Maximum Likelihood Estimation (MLE), has been shown problematic, where the trained model prefers using dull and repetitive phrases. In this work, we introduce ScaleGrad, a modification straight to the gradient of the loss function, to remedy the degeneration issue of the standard MLE objective. By directly maneuvering the gradient information, ScaleGrad makes the model learn to use novel tokens. Empirical results show the effectiveness of our method not only in open-ended generation, but also in directed generation tasks. With the simplicity in architecture, our method can serve as a general training objective that is applicable to most of the neural text generation tasks.

Jinyin Chen, Xiang Lin, Dunjie Zhang et al.

Deep learning is effective in graph analysis. It is widely applied in many related areas, such as link prediction, node classification, community detection, and graph classification etc. Graph embedding, which learns low-dimensional representations for vertices or edges in the graph, usually employs deep models to derive the embedding vector. However, these models are vulnerable. We envision that graph embedding methods based on deep models can be easily attacked using adversarial examples. Thus, in this paper, we propose Graphfool, a novel targeted label adversarial attack on graph embedding. It can generate adversarial graph to attack graph embedding methods via classifying boundary and gradient information in graph convolutional network (GCN). Specifically, we perform the following steps: 1),We first estimate the classification boundaries of different classes. 2), We calculate the minimal perturbation matrix to misclassify the attacked vertex according to the target classification boundary. 3), We modify the adjacency matrix according to the maximal absolute value of the disturbance matrix. This process is implemented iteratively. To the best of our knowledge, this is the first targeted label attack technique. The experiments on real-world graph networks demonstrate that Graphfool can derive better performance than state-of-art techniques. Compared with the second best algorithm, Graphfool can achieve an average improvement of 11.44% in attack success rate.

Yaguan Qian, Qiqi Shao, Jiamin Wang et al.

With the boom of edge intelligence, its vulnerability to adversarial attacks becomes an urgent problem. The so-called adversarial example can fool a deep learning model on the edge node to misclassify. Due to the property of transferability, the adversary can easily make a black-box attack using a local substitute model. Nevertheless, the limitation of resource of edge nodes cannot afford a complicated defense mechanism as doing on the cloud data center. To overcome the challenge, we propose a dynamic defense mechanism, namely EI-MTD. It first obtains robust member models with small size through differential knowledge distillation from a complicated teacher model on the cloud data center. Then, a dynamic scheduling policy based on a Bayesian Stackelberg game is applied to the choice of a target model for service. This dynamic defense can prohibit the adversary from selecting an optimal substitute model for black-box attacks. Our experimental result shows that this dynamic scheduling can effectively protect edge intelligence against adversarial attacks under the black-box setting.

Tasnim Mohiuddin, Prathyusha Jwalapuram, Xiang Lin et al.

Although coherence modeling has come a long way in developing novel models, their evaluation on downstream applications for which they are purportedly developed has largely been neglected. With the advancements made by neural approaches in applications such as machine translation (MT), summarization and dialog systems, the need for coherence evaluation of these tasks is now more crucial than ever. However, coherence models are typically evaluated only on synthetic tasks, which may not be representative of their performance in downstream applications. To investigate how representative the synthetic tasks are of downstream use cases, we conduct experiments on benchmarking well-known traditional and neural coherence models on synthetic sentence ordering tasks, and contrast this with their performance on three downstream applications: coherence evaluation for MT and summarization, and next utterance prediction in retrieval-based dialog. Our results demonstrate a weak correlation between the model performances in the synthetic tasks and the downstream applications, {motivating alternate training and evaluation methods for coherence models.

Simeng Han, Xiang Lin, Shafiq Joty

Submodularity is desirable for a variety of objectives in content selection where the current neural encoder-decoder framework is inadequate. However, it has so far not been explored in the neural encoder-decoder system for text generation. In this work, we define diminishing attentions with submodular functions and in turn, prove the submodularity of the effective neural coverage. The greedy algorithm approximating the solution to the submodular maximization problem is not suited to attention score optimization in auto-regressive generation. Therefore instead of following how submodular function has been widely used, we propose a simplified yet principled solution. The resulting attention module offers an architecturally simple and empirically effective method to improve the coverage of neural text generation. We run experiments on three directed text generation tasks with different levels of recovering rate, across two modalities, three different neural model architectures and two training strategy variations. The results and analyses demonstrate that our method generalizes well across these settings, produces texts of good quality and outperforms state-of-the-art baselines.

Abdelkerim Amari, Xiang Lin, Octavia A. Dobre et al.

Machine learning techniques have recently received significant attention as promising approaches to deal with the optical channel impairments, and in particular, the nonlinear effects. In this work, a machine learning-based classification technique, known as the Parzen window (PW) classifier, is applied to mitigate the nonlinear effects in the optical channel. The PW classifier is used as a detector with improved nonlinear decision boundaries more adapted to the nonlinear fiber channel. Performance improvement is observed when applying the PW in the context of dispersion managed and dispersion unmanaged systems.

Linlin Liu, Xiang Lin, Shafiq Joty et al.

Transition-based top-down parsing with pointer networks has achieved state-of-the-art results in multiple parsing tasks, while having a linear time complexity. However, the decoder of these parsers has a sequential structure, which does not yield the most appropriate inductive bias for deriving tree structures. In this paper, we propose hierarchical pointer network parsers, and apply them to dependency and sentence-level discourse parsing tasks. Our results on standard benchmark datasets demonstrate the effectiveness of our approach, outperforming existing methods and setting a new state-of-the-art.

Xiang Lin, Shafiq Joty, Prathyusha Jwalapuram et al.

We propose an efficient neural framework for sentence-level discourse analysis in accordance with Rhetorical Structure Theory (RST). Our framework comprises a discourse segmenter to identify the elementary discourse units (EDU) in a text, and a discourse parser that constructs a discourse tree in a top-down fashion. Both the segmenter and the parser are based on Pointer Networks and operate in linear time. Our segmenter yields an $F_1$ score of 95.4, and our parser achieves an $F_1$ score of 81.7 on the aggregated labeled (relation) metric, surpassing previous approaches by a good margin and approaching human agreement on both tasks (98.3 and 83.0 $F_1$).

Jinyin Chen, Yangyang Wu, Lu Fan et al.

Recommender systems are becoming more and more important in our daily lives. However, traditional recommendation methods are challenged by data sparsity and efficiency, as the numbers of users, items, and interactions between the two in many real-world applications increase fast. In this work, we propose a novel clustering recommender system based on node2vec technology and rich information network, namely N2VSCDNNR, to solve these challenges. In particular, we use a bipartite network to construct the user-item network, and represent the interactions among users (or items) by the corresponding one-mode projection network. In order to alleviate the data sparsity problem, we enrich the network structure according to user and item categories, and construct the one-mode projection category network. Then, considering the data sparsity problem in the network, we employ node2vec to capture the complex latent relationships among users (or items) from the corresponding one-mode projection category network. Moreover, considering the dependency on parameter settings and information loss problem in clustering methods, we use a novel spectral clustering method, which is based on dynamic nearest-neighbors (DNN) and a novel automatically determining cluster number (ADCN) method that determines the cluster centers based on the normal distribution method, to cluster the users and items separately. After clustering, we propose the two-phase personalized recommendation to realize the personalized recommendation of items for each user. A series of experiments validate the outstanding performance of our N2VSCDNNR over several advanced embedding and side information based recommendation algorithms. Meanwhile, N2VSCDNNR seems to have lower time complexity than the baseline methods in online recommendations, indicating its potential to be widely applied in large-scale systems.

Abdelkerim Amari, Xiang Lin, Octavia A. Dobre et al.

We investigate the performance of a machine learning classification technique, called the Parzen window, to mitigate the fiber nonlinearity in the context of dispersion managed and dispersion unmanaged systems. The technique is applied for detection at the receiver side, and deals with the non-Gaussian nonlinear effects by designing improved decision boundaries. We also propose a two-stage mitigation technique using digital back propagation and Parzen window for dispersion unmanaged systems. In this case, digital back propagation compensates for the deterministic nonlinearity and the Parzen window deals with the stochastic nonlinear signal-noise interactions, which are not taken into account by digital back propagation. A performance improvement up to 0:4 dB in terms of Q factor is observed.