Jintang Li

Jintang Li, Zhouxin Yu, Zulun Zhu et al.

Recent years have seen a surge in research on dynamic graph representation learning, which aims to model temporal graphs that are dynamic and evolving constantly over time. However, current work typically models graph dynamics with recurrent neural networks (RNNs), making them suffer seriously from computation and memory overheads on large temporal graphs. So far, scalability of dynamic graph representation learning on large temporal graphs remains one of the major challenges. In this paper, we present a scalable framework, namely SpikeNet, to efficiently capture the temporal and structural patterns of temporal graphs. We explore a new direction in that we can capture the evolving dynamics of temporal graphs with spiking neural networks (SNNs) instead of RNNs. As a low-power alternative to RNNs, SNNs explicitly model graph dynamics as spike trains of neuron populations and enable spike-based propagation in an efficient way. Experiments on three large real-world temporal graph datasets demonstrate that SpikeNet outperforms strong baselines on the temporal node classification task with lower computational costs. Particularly, SpikeNet generalizes to a large temporal graph (2.7M nodes and 13.9M edges) with significantly fewer parameters and computation overheads.Our code is publicly available at \url{https://github.com/EdisonLeeeee/SpikeNet}.

Jintang Li, Ruofan Wu, Wangbin Sun et al.

The last years have witnessed the emergence of a promising self-supervised learning strategy, referred to as masked autoencoding. However, there is a lack of theoretical understanding of how masking matters on graph autoencoders (GAEs). In this work, we present masked graph autoencoder (MaskGAE), a self-supervised learning framework for graph-structured data. Different from standard GAEs, MaskGAE adopts masked graph modeling (MGM) as a principled pretext task - masking a portion of edges and attempting to reconstruct the missing part with partially visible, unmasked graph structure. To understand whether MGM can help GAEs learn better representations, we provide both theoretical and empirical evidence to comprehensively justify the benefits of this pretext task. Theoretically, we establish close connections between GAEs and contrastive learning, showing that MGM significantly improves the self-supervised learning scheme of GAEs. Empirically, we conduct extensive experiments on a variety of graph benchmarks, demonstrating the superiority of MaskGAE over several state-of-the-arts on both link prediction and node classification tasks.

Jintang Li, Jiaying Peng, Liang Chen et al.

Recent studies demonstrate that Graph Neural Networks (GNNs) are vulnerable to slight but adversarially designed perturbations, known as adversarial examples. To address this issue, robust training methods against adversarial examples have received considerable attention in the literature. \emph{Adversarial Training (AT)} is a successful approach to learning a robust model using adversarially perturbed training samples. Existing AT methods on GNNs typically construct adversarial perturbations in terms of graph structures or node features. However, they are less effective and fraught with challenges on graph data due to the discreteness of graph structure and the relationships between connected examples. In this work, we seek to address these challenges and propose Spectral Adversarial Training (SAT), a simple yet effective adversarial training approach for GNNs. SAT first adopts a low-rank approximation of the graph structure based on spectral decomposition, and then constructs adversarial perturbations in the spectral domain rather than directly manipulating the original graph structure. To investigate its effectiveness, we employ SAT on three widely used GNNs. Experimental results on four public graph datasets demonstrate that SAT significantly improves the robustness of GNNs against adversarial attacks without sacrificing classification accuracy and training efficiency.

Bingzhe Wu, Jintang Li, Junchi Yu et al.

Deep graph learning has achieved remarkable progresses in both business and scientific areas ranging from finance and e-commerce, to drug and advanced material discovery. Despite these progresses, how to ensure various deep graph learning algorithms behave in a socially responsible manner and meet regulatory compliance requirements becomes an emerging problem, especially in risk-sensitive domains. Trustworthy graph learning (TwGL) aims to solve the above problems from a technical viewpoint. In contrast to conventional graph learning research which mainly cares about model performance, TwGL considers various reliability and safety aspects of the graph learning framework including but not limited to robustness, explainability, and privacy. In this survey, we provide a comprehensive review of recent leading approaches in the TwGL field from three dimensions, namely, reliability, explainability, and privacy protection. We give a general categorization for existing work and review typical work for each category. To give further insights for TwGL research, we provide a unified view to inspect previous works and build the connection between them. We also point out some important open problems remaining to be solved in the future developments of TwGL.

Jintang Li, Jie Liao, Ruofan Wu et al.

Graph convolutional networks (GCNs) have been shown to be vulnerable to small adversarial perturbations, which becomes a severe threat and largely limits their applications in security-critical scenarios. To mitigate such a threat, considerable research efforts have been devoted to increasing the robustness of GCNs against adversarial attacks. However, current defense approaches are typically designed to prevent GCNs from untargeted adversarial attacks and focus on overall performance, making it challenging to protect important local nodes from more powerful targeted adversarial attacks. Additionally, a trade-off between robustness and performance is often made in existing research. Such limitations highlight the need for developing an effective and efficient approach that can defend local nodes against targeted attacks, without compromising the overall performance of GCNs. In this work, we present a simple yet effective method, named Graph Universal Adversarial Defense (GUARD). Unlike previous works, GUARD protects each individual node from attacks with a universal defensive patch, which is generated once and can be applied to any node (node-agnostic) in a graph. GUARD is fast, straightforward to implement without any change to network architecture nor any additional parameters, and is broadly applicable to any GCNs. Extensive experiments on four benchmark datasets demonstrate that GUARD significantly improves robustness for several established GCNs against multiple adversarial attacks and outperforms state-of-the-art defense methods by large margins.

Jie Liao, Jintang Li, Liang Chen et al.

Graph Neural Networks (GNNs) have achieved state-of-the-art performance in representation learning for graphs recently. However, the effectiveness of GNNs, which capitalize on the key operation of message propagation, highly depends on the quality of the topology structure. Most of the graphs in real-world scenarios follow a long-tailed distribution on their node degrees, that is, a vast majority of the nodes in the graph are tail nodes with only a few connected edges. GNNs produce inferior node representations for tail nodes since they lack structural information. In the pursuit of promoting the expressiveness of GNNs for tail nodes, we explore how the deficiency of structural information deteriorates the performance of tail nodes and propose a general Structural Augmentation based taIL nOde Representation learning framework, dubbed as SAILOR, which can jointly learn to augment the graph structure and extract more informative representations for tail nodes. Extensive experiments on public benchmark datasets demonstrate that SAILOR can significantly improve the tail node representations and outperform the state-of-the-art baselines.

Xinzhou Jin, Jintang Li, Liang Chen et al.

Graph neural networks (GNNs) have recently emerged as an effective approach to model neighborhood signals in collaborative filtering. Towards this research line, graph contrastive learning (GCL) demonstrates robust capabilities to address the supervision label shortage issue through generating massive self-supervised signals. Despite its effectiveness, GCL for recommendation suffers seriously from two main challenges: i) GCL relies on graph augmentation to generate semantically different views for contrasting, which could potentially disrupt key information and introduce unwanted noise; ii) current works for GCL primarily focus on contrasting representations using sophisticated networks architecture (usually deep) to capture high-order interactions, which leads to increased computational complexity and suboptimal training efficiency. To this end, we propose L2CL, a principled Layer-to-Layer Contrastive Learning framework that contrasts representations from different layers. By aligning the semantic similarities between different layers, L2CL enables the learning of complex structural relationships and gets rid of the noise perturbation in stochastic data augmentation. Surprisingly, we find that L2CL, using only one-hop contrastive learning paradigm, is able to capture intrinsic semantic structures and improve the quality of node representation, leading to a simple yet effective architecture. We also provide theoretical guarantees for L2CL in minimizing task-irrelevant information. Extensive experiments on five real-world datasets demonstrate the superiority of our model over various state-of-the-art collaborative filtering methods. Our code is available at https://github.com/downeykking/L2CL.

Jintang Li, Wangbin Sun, Ruofan Wu et al.

Oversmoothing is a common phenomenon observed in graph neural networks (GNNs), in which an increase in the network depth leads to a deterioration in their performance. Graph contrastive learning (GCL) is emerging as a promising way of leveraging vast unlabeled graph data. As a marriage between GNNs and contrastive learning, it remains unclear whether GCL inherits the same oversmoothing defect from GNNs. This work undertakes a fundamental analysis of GCL from the perspective of oversmoothing on the first hand. We demonstrate empirically that increasing network depth in GCL also leads to oversmoothing in their deep representations, and surprisingly, the shallow ones. We refer to this phenomenon in GCL as `long-range starvation', wherein lower layers in deep networks suffer from degradation due to the lack of sufficient guidance from supervision. Based on our findings, we present BlockGCL, a remarkably simple yet effective blockwise training framework to prevent GCL from notorious oversmoothing. Without bells and whistles, BlockGCL consistently improves robustness and stability for well-established GCL methods with increasing numbers of layers on several real-world graph benchmarks.

Zulun Zhu, Jiaying Peng, Jintang Li et al.

Graph Convolutional Networks (GCNs) achieve an impressive performance due to the remarkable representation ability in learning the graph information. However, GCNs, when implemented on a deep network, require expensive computation power, making them difficult to be deployed on battery-powered devices. In contrast, Spiking Neural Networks (SNNs), which perform a bio-fidelity inference process, offer an energy-efficient neural architecture. In this work, we propose SpikingGCN, an end-to-end framework that aims to integrate the embedding of GCNs with the biofidelity characteristics of SNNs. The original graph data are encoded into spike trains based on the incorporation of graph convolution. We further model biological information processing by utilizing a fully connected layer combined with neuron nodes. In a wide range of scenarios (e.g. citation networks, image graph classification, and recommender systems), our experimental results show that the proposed method could gain competitive performance against state-of-the-art approaches. Furthermore, we show that SpikingGCN on a neuromorphic chip can bring a clear advantage of energy efficiency into graph data analysis, which demonstrates its great potential to construct environment-friendly machine learning models.

Yuchang Zhu, Jintang Li, Liang Chen et al.

Graph neural networks (GNNs) are being increasingly used in many high-stakes tasks, and as a result, there is growing attention on their fairness recently. GNNs have been shown to be unfair as they tend to make discriminatory decisions toward certain demographic groups, divided by sensitive attributes such as gender and race. While recent works have been devoted to improving their fairness performance, they often require accessible demographic information. This greatly limits their applicability in real-world scenarios due to legal restrictions. To address this problem, we present a demographic-agnostic method to learn fair GNNs via knowledge distillation, namely FairGKD. Our work is motivated by the empirical observation that training GNNs on partial data (i.e., only node attributes or topology data) can improve their fairness, albeit at the cost of utility. To make a balanced trade-off between fairness and utility performance, we employ a set of fairness experts (i.e., GNNs trained on different partial data) to construct the synthetic teacher, which distills fairer and informative knowledge to guide the learning of the GNN student. Experiments on several benchmark datasets demonstrate that FairGKD, which does not require access to demographic information, significantly improves the fairness of GNNs by a large margin while maintaining their utility.

Jintang Li, Zheng Wei, Jiawang Dan et al.

Real-world graphs are typically complex, exhibiting heterogeneity in the global structure, as well as strong heterophily within local neighborhoods. While a growing body of literature has revealed the limitations of common graph neural networks (GNNs) in handling homogeneous graphs with heterophily, little work has been conducted on investigating the heterophily properties in the context of heterogeneous graphs. To bridge this research gap, we identify the heterophily in heterogeneous graphs using metapaths and propose two practical metrics to quantitatively describe the levels of heterophily. Through in-depth investigations on several real-world heterogeneous graphs exhibiting varying levels of heterophily, we have observed that heterogeneous graph neural networks (HGNNs), which inherit many mechanisms from GNNs designed for homogeneous graphs, fail to generalize to heterogeneous graphs with heterophily or low level of homophily. To address the challenge, we present Hetero$^2$Net, a heterophily-aware HGNN that incorporates both masked metapath prediction and masked label prediction tasks to effectively and flexibly handle both homophilic and heterophilic heterogeneous graphs. We evaluate the performance of Hetero$^2$Net on five real-world heterogeneous graph benchmarks with varying levels of heterophily. The results demonstrate that Hetero$^2$Net outperforms strong baselines in the semi-supervised node classification task, providing valuable insights into effectively handling more complex heterogeneous graphs.

Zishan Gu, Jintang Li, Liang Chen

Graph Neural Networks (GNNs) as deep learning models working on graph-structure data have achieved advanced performance in many works. However, it has been proved repeatedly that, not all edges in a graph are necessary for the training of machine learning models. In other words, some of the connections between nodes may bring redundant or even misleading information to downstream tasks. In this paper, we try to provide a method to drop edges in order to purify the graph data from a new perspective. Specifically, it is a framework to purify graphs with the least loss of information, under which the core problems are how to better evaluate the edges and how to delete the relatively redundant edges with the least loss of information. To address the above two problems, we propose several measurements for the evaluation and different judges and filters for the edge deletion. We also introduce a residual-iteration strategy and a surrogate model for measurements requiring unknown information. The experimental results show that our proposed measurements for KL divergence with constraints to maintain the connectivity of the graph and delete edges in an iterative way can find out the most edges while keeping the performance of GNNs. What's more, further experiments show that this method also achieves the best defense performance against adversarial attacks.

Jintang Li, Jiawang Dan, Ruofan Wu et al.

Over the past few years, graph neural networks (GNNs) have become powerful and practical tools for learning on (static) graph-structure data. However, many real-world applications, such as social networks and e-commerce, involve temporal graphs where nodes and edges are dynamically evolving. Temporal graph neural networks (TGNNs) have progressively emerged as an extension of GNNs to address time-evolving graphs and have gradually become a trending research topic in both academics and industry. Advancing research and application in such an emerging field necessitates the development of new tools to compose TGNN models and unify their different schemes for dealing with temporal graphs. In this work, we introduce LasTGL, an industrial framework that integrates unified and extensible implementations of common temporal graph learning algorithms for various advanced tasks. The purpose of LasTGL is to provide the essential building blocks for solving temporal graph learning tasks, focusing on the guiding principles of user-friendliness and quick prototyping on which PyTorch is based. In particular, LasTGL provides comprehensive temporal graph datasets, TGNN models and utilities along with well-documented tutorials, making it suitable for both absolute beginners and expert deep learning practitioners alike.

Yuchang Zhu, Jintang Li, Zibin Zheng et al.

Group fairness for Graph Neural Networks (GNNs), which emphasizes algorithmic decisions neither favoring nor harming certain groups defined by sensitive attributes (e.g., race and gender), has gained considerable attention. In particular, the objective of group fairness is to ensure that the decisions made by GNNs are independent of the sensitive attribute. To achieve this objective, most existing approaches involve eliminating sensitive attribute information in node representations or algorithmic decisions. However, such ways may also eliminate task-related information due to its inherent correlation with the sensitive attribute, leading to a sacrifice in utility. In this work, we focus on improving the fairness of GNNs while preserving task-related information and propose a fair GNN framework named FairSAD. Instead of eliminating sensitive attribute information, FairSAD enhances the fairness of GNNs via Sensitive Attribute Disentanglement (SAD), which separates the sensitive attribute-related information into an independent component to mitigate its impact. Additionally, FairSAD utilizes a channel masking mechanism to adaptively identify the sensitive attribute-related component and subsequently decorrelates it. Overall, FairSAD minimizes the impact of the sensitive attribute on GNN outcomes rather than eliminating sensitive attributes, thereby preserving task-related information associated with the sensitive attribute. Furthermore, experiments conducted on several real-world datasets demonstrate that FairSAD outperforms other state-of-the-art methods by a significant margin in terms of both fairness and utility performance. Our source code is available at https://github.com/ZzoomD/FairSAD.

Yuchang Zhu, Huizhe Zhang, Bingzhe Wu et al.

Large language models (LLMs) are widely adopted to generate synthetic datasets for various natural language processing (NLP) tasks, such as text classification and summarization. However, accurately measuring the diversity of these synthetic datasets-an aspect crucial for robust model performance-remains a significant challenge. In this paper, we introduce DCScore, a novel method for measuring synthetic dataset diversity from a classification perspective. Specifically, DCScore formulates diversity evaluation as a sample classification task, leveraging mutual relationships among samples. We further provide theoretical verification of the diversity-related axioms satisfied by DCScore, highlighting its role as a principled diversity evaluation method. Experimental results on synthetic datasets reveal that DCScore enjoys a stronger correlation with multiple diversity pseudo-truths of evaluated datasets, underscoring its effectiveness. Moreover, both empirical and theoretical evidence demonstrate that DCScore substantially reduces computational costs compared to existing methods. Code is available at: https://github.com/bluewhalelab/dcscore.

Jintang Li, Ruofan Wu, Yuchang Zhu et al.

Graph autoencoders (GAEs) are self-supervised learning models that can learn meaningful representations of graph-structured data by reconstructing the input graph from a low-dimensional latent space. Over the past few years, GAEs have gained significant attention in academia and industry. In particular, the recent advent of GAEs with masked autoencoding schemes marks a significant advancement in graph self-supervised learning research. While numerous GAEs have been proposed, the underlying mechanisms of GAEs are not well understood, and a comprehensive benchmark for GAEs is still lacking. In this work, we bridge the gap between GAEs and contrastive learning by establishing conceptual and methodological connections. We revisit the GAEs studied in previous works and demonstrate how contrastive learning principles can be applied to GAEs. Motivated by these insights, we introduce lrGAE (left-right GAE), a general and powerful GAE framework that leverages contrastive learning principles to learn meaningful representations. Our proposed lrGAE not only facilitates a deeper understanding of GAEs but also sets a new benchmark for GAEs across diverse graph-based learning tasks. The source code for lrGAE, including the baselines and all the code for reproducing the results, is publicly available at https://github.com/EdisonLeeeee/lrGAE.

Yuchang Zhu, Jintang Li, Huizhe Zhang et al.

Individual fairness (IF) in graph neural networks (GNNs), which emphasizes the need for similar individuals should receive similar outcomes from GNNs, has been a critical issue. Despite its importance, research in this area has been largely unexplored in terms of (1) a clear understanding of what induces individual unfairness in GNNs and (2) a comprehensive consideration of identifying similar individuals. To bridge these gaps, we conduct a preliminary analysis to explore the underlying reason for individual unfairness and observe correlations between IF and similarity consistency, a concept introduced to evaluate the discrepancy in identifying similar individuals based on graph structure versus node features. Inspired by our observations, we introduce two metrics to assess individual similarity from two distinct perspectives: topology fusion and feature fusion. Building upon these metrics, we propose Similarity-aware GNNs for Individual Fairness, named SaGIF. The key insight behind SaGIF is the integration of individual similarities by independently learning similarity representations, leading to an improvement of IF in GNNs. Our experiments on several real-world datasets validate the effectiveness of our proposed metrics and SaGIF. Specifically, SaGIF consistently outperforms state-of-the-art IF methods while maintaining utility performance. Code is available at: https://github.com/ZzoomD/SaGIF.

Yuchang Zhu, Jintang Li, Yatao Bian et al.

Recent studies have highlighted fairness issues in Graph Neural Networks (GNNs), where they produce discriminatory predictions against specific protected groups categorized by sensitive attributes such as race and age. While various efforts to enhance GNN fairness have made significant progress, these approaches are often tailored to specific sensitive attributes. Consequently, they necessitate retraining the model from scratch to accommodate changes in the sensitive attribute requirement, resulting in high computational costs. To gain deeper insights into this issue, we approach the graph fairness problem from a causal modeling perspective, where we identify the confounding effect induced by the sensitive attribute as the underlying reason. Motivated by this observation, we formulate the fairness problem in graphs from an invariant learning perspective, which aims to learn invariant representations across environments. Accordingly, we propose a graph fairness framework based on invariant learning, namely FairINV, which enables the training of fair GNNs to accommodate various sensitive attributes within a single training session. Specifically, FairINV incorporates sensitive attribute partition and trains fair GNNs by eliminating spurious correlations between the label and various sensitive attributes. Experimental results on several real-world datasets demonstrate that FairINV significantly outperforms state-of-the-art fairness approaches, underscoring its effectiveness. Our code is available via: https://github.com/ZzoomD/FairINV/.

Jintang Li, Sheng Tian, Ruofan Wu et al.

The prevalence of large-scale graphs poses great challenges in time and storage for training and deploying graph neural networks (GNNs). Several recent works have explored solutions for pruning the large original graph into a small and highly-informative one, such that training and inference on the pruned and large graphs have comparable performance. Although empirically effective, current researches focus on static or non-temporal graphs, which are not directly applicable to dynamic scenarios. In addition, they require labels as ground truth to learn the informative structure, limiting their applicability to new problem domains where labels are hard to obtain. To solve the dilemma, we propose and study the problem of unsupervised graph pruning on dynamic graphs. We approach the problem by our proposed STEP, a self-supervised temporal pruning framework that learns to remove potentially redundant edges from input dynamic graphs. From a technical and industrial viewpoint, our method overcomes the trade-offs between the performance and the time & memory overheads. Our results on three real-world datasets demonstrate the advantages on improving the efficacy, robustness, and efficiency of GNNs on dynamic node classification tasks. Most notably, STEP is able to prune more than 50% of edges on a million-scale industrial graph Alipay (7M nodes, 21M edges) while approximating up to 98% of the original performance. Code is available at https://github.com/EdisonLeeeee/STEP.

Jintang Li, Kun Xu, Liang Chen et al.

Graph Neural Networks (GNNs) have recently shown to be powerful tools for representing and analyzing graph data. So far GNNs is becoming an increasingly critical role in software engineering including program analysis, type inference, and code representation. In this paper, we introduce GraphGallery, a platform for fast benchmarking and easy development of GNNs based software. GraphGallery is an easy-to-use platform that allows developers to automatically deploy GNNs even with less domain-specific knowledge. It offers a set of implementations of common GNN models based on mainstream deep learning frameworks. In addition, existing GNNs toolboxes such as PyG and DGL can be easily incorporated into the platform. Experiments demonstrate the reliability of implementations and superiority in fast coding. The official source code of GraphGallery is available at https://github.com/EdisonLeeeee/GraphGallery and a demo video can be found at https://youtu.be/mv7Zs1YeaYo.

Jintang Li, Tao Xie, Liang Chen et al.

Recent studies have shown that graph neural networks (GNNs) are vulnerable against perturbations due to lack of robustness and can therefore be easily fooled. Currently, most works on attacking GNNs are mainly using gradient information to guide the attack and achieve outstanding performance. However, the high complexity of time and space makes them unmanageable for large scale graphs and becomes the major bottleneck that prevents the practical usage. We argue that the main reason is that they have to use the whole graph for attacks, resulting in the increasing time and space complexity as the data scale grows. In this work, we propose an efficient Simplified Gradient-based Attack (SGA) method to bridge this gap. SGA can cause the GNNs to misclassify specific target nodes through a multi-stage attack framework, which needs only a much smaller subgraph. In addition, we present a practical metric named Degree Assortativity Change (DAC) to measure the impacts of adversarial attacks on graph data. We evaluate our attack method on four real-world graph networks by attacking several commonly used GNNs. The experimental results demonstrate that SGA can achieve significant time and memory efficiency improvements while maintaining competitive attack performance compared to state-of-art attack techniques. Codes are available via: https://github.com/EdisonLeeeee/SGAttack.

Liang Chen, Jintang Li, Jiaying Peng et al.

Deep learning models on graphs have achieved remarkable performance in various graph analysis tasks, e.g., node classification, link prediction, and graph clustering. However, they expose uncertainty and unreliability against the well-designed inputs, i.e., adversarial examples. Accordingly, a line of studies has emerged for both attack and defense addressed in different graph analysis tasks, leading to the arms race in graph adversarial learning. Despite the booming works, there still lacks a unified problem definition and a comprehensive review. To bridge this gap, we investigate and summarize the existing works on graph adversarial learning tasks systemically. Specifically, we survey and unify the existing works w.r.t. attack and defense in graph analysis tasks, and give appropriate definitions and taxonomies at the same time. Besides, we emphasize the importance of related evaluation metrics, investigate and summarize them comprehensively. Hopefully, our works can provide a comprehensive overview and offer insights for the relevant researchers. Latest advances in graph adversarial learning are summarized in our GitHub repository https://github.com/EdisonLeeeee/Graph-Adversarial-Learning.

Wangbin Sun, Jintang Li, Liang Chen et al.

Graph contrastive learning (GCL) has emerged as a representative paradigm in graph self-supervised learning, where negative samples are commonly regarded as the key to preventing model collapse and producing distinguishable representations. Recent studies have shown that GCL without negative samples can achieve state-of-the-art performance as well as scalability improvement, with bootstrapped graph latent (BGRL) as a prominent step forward. However, BGRL relies on a complex architecture to maintain the ability to scatter representations, and the underlying mechanisms enabling the success remain largely unexplored. In this paper, we introduce an instance-level decorrelation perspective to tackle the aforementioned issue and leverage it as a springboard to reveal the potential unnecessary model complexity within BGRL. Based on our findings, we present SGCL, a simple yet effective GCL framework that utilizes the outputs from two consecutive iterations as positive pairs, eliminating the negative samples. SGCL only requires a single graph augmentation and a single graph encoder without additional parameters. Extensive experiments conducted on various graph benchmarks demonstrate that SGCL can achieve competitive performance with fewer parameters, lower time and space costs, and significant convergence speedup.

Jintang Li, Ruofan Wu, Yuchang Zhu et al.

Large language models (LLMs) have demonstrated remarkable in-context reasoning capabilities across a wide range of tasks, particularly with unstructured inputs such as language or images. However, LLMs struggle to handle structured data, such as graphs, due to their lack of understanding of non-Euclidean structures. As a result, without additional fine-tuning, their performance significantly lags behind that of graph neural networks (GNNs) in graph learning tasks. In this paper, we show that learning on graph data can be conceptualized as a retrieval-augmented generation (RAG) process, where specific instances (e.g., nodes or edges) act as queries, and the graph itself serves as the retrieved context. Building on this insight, we propose a series of RAG frameworks to enhance the in-context learning capabilities of LLMs for graph learning tasks. Comprehensive evaluations demonstrate that our proposed RAG frameworks significantly improve LLM performance on graph-based tasks, particularly in scenarios where a pretrained LLM must be used without modification or accessed via an API.

Huizhe Zhang, Jintang Li, Yuchang Zhu et al.

Graph Transformers (GTs), which simultaneously integrate message-passing and self-attention mechanisms, have achieved promising empirical results in some graph prediction tasks. Although these approaches show the potential of Transformers in capturing long-range graph topology information, issues concerning the quadratic complexity and high computing energy consumption severely limit the scalability of GTs on large-scale graphs. Recently, as brain-inspired neural networks, Spiking Neural Networks (SNNs), facilitate the development of graph representation learning methods with lower computational and storage overhead through the unique event-driven spiking neurons. Inspired by these characteristics, we propose a linear-time Graph Transformer using Spiking Vector Quantization (GT-SVQ) for node classification. GT-SVQ reconstructs codebooks based on rate coding outputs from spiking neurons, and injects the codebooks into self-attention blocks to aggregate global information in linear complexity. Besides, spiking vector quantization effectively alleviates codebook collapse and the reliance on complex machinery (distance measure, auxiliary loss, etc.) present in previous vector quantization-based graph learning methods. In experiments, we compare GT-SVQ with other state-of-the-art baselines on node classification datasets ranging from small to large. Experimental results show that GT-SVQ has achieved competitive performances on most datasets while maintaining up to 130x faster inference speed compared to other GTs.

Huizhe Zhang, Jintang Li, Yuchang Zhu et al.

Graph Neural Networks (GNNs) are exemplary deep models designed for graph data. Message passing mechanism enables GNNs to effectively capture graph topology and push the performance boundaries across various graph tasks. However, the trend of developing such complex machinery for graph representation learning has become unsustainable on large-scale graphs. The computational and time overhead make it imperative to develop more energy-efficient GNNs to cope with the explosive growth of real-world graphs. Spiking Graph Neural Networks (SGNNs), which integrate biologically plausible learning via unique spike-based neurons, have emerged as a promising energy-efficient alternative. Different layers communicate with sparse and binary spikes, which facilitates computation and storage of intermediate graph representations. Despite the proliferation of SGNNs proposed in recent years, there is no systematic benchmark to explore the basic design principles of these brain-inspired networks on the graph data. To bridge this gap, we present SGNNBench to quantify progress in the field of SGNNs. Specifically, SGNNBench conducts an in-depth investigation of SGNNs from multiple perspectives, including effectiveness, energy efficiency, and architectural design. We comprehensively evaluate 9 state-of-the-art SGNNs across 18 datasets. Regarding efficiency, we empirically compare these baselines w.r.t model size, memory usage, and theoretical energy consumption to reveal the often-overlooked energy bottlenecks of SGNNs. Besides, we elaborately investigate the design space of SGNNs to promote the development of a general SGNN paradigm.

Yunfei Liu, Jintang Li, Yuehe Chen et al.

Graph clustering, a fundamental and challenging task in graph mining, aims to classify nodes in a graph into several disjoint clusters. In recent years, graph contrastive learning (GCL) has emerged as a dominant line of research in graph clustering and advances the new state-of-the-art. However, GCL-based methods heavily rely on graph augmentations and contrastive schemes, which may potentially introduce challenges such as semantic drift and scalability issues. Another promising line of research involves the adoption of modularity maximization, a popular and effective measure for community detection, as the guiding principle for clustering tasks. Despite the recent progress, the underlying mechanism of modularity maximization is still not well understood. In this work, we dig into the hidden success of modularity maximization for graph clustering. Our analysis reveals the strong connections between modularity maximization and graph contrastive learning, where positive and negative examples are naturally defined by modularity. In light of our results, we propose a community-aware graph clustering framework, coined MAGI, which leverages modularity maximization as a contrastive pretext task to effectively uncover the underlying information of communities in graphs, while avoiding the problem of semantic drift. Extensive experiments on multiple graph datasets verify the effectiveness of MAGI in terms of scalability and clustering performance compared to state-of-the-art graph clustering methods. Notably, MAGI easily scales a sufficiently large graph with 100M nodes while outperforming strong baselines.

Jintang Li, Ruofan Wu, Xinzhou Jin et al.

Over the past few years, research on deep graph learning has shifted from static graphs to temporal graphs in response to real-world complex systems that exhibit dynamic behaviors. In practice, temporal graphs are formalized as an ordered sequence of static graph snapshots observed at discrete time points. Sequence models such as RNNs or Transformers have long been the predominant backbone networks for modeling such temporal graphs. Yet, despite the promising results, RNNs struggle with long-range dependencies, while transformers are burdened by quadratic computational complexity. Recently, state space models (SSMs), which are framed as discretized representations of an underlying continuous-time linear dynamical system, have garnered substantial attention and achieved breakthrough advancements in independent sequence modeling. In this work, we undertake a principled investigation that extends SSM theory to temporal graphs by integrating structural information into the online approximation objective via the adoption of a Laplacian regularization term. The emergent continuous-time system introduces novel algorithmic challenges, thereby necessitating our development of GraphSSM, a graph state space model for modeling the dynamics of temporal graphs. Extensive experimental results demonstrate the effectiveness of our GraphSSM framework across various temporal graph benchmarks.

Huizhe Zhang, Jintang Li, Liang Chen et al.

Graph Transformers (GTs) with powerful representation learning ability make a huge success in wide range of graph tasks. However, the costs behind outstanding performances of GTs are higher energy consumption and computational overhead. The complex structure and quadratic complexity during attention calculation in vanilla transformer seriously hinder its scalability on the large-scale graph data. Though existing methods have made strides in simplifying combinations among blocks or attention-learning paradigm to improve GTs' efficiency, a series of energy-saving solutions originated from biologically plausible structures are rarely taken into consideration when constructing GT framework. To this end, we propose a new spiking-based graph transformer (SGHormer). It turns full-precision embeddings into sparse and binarized spikes to reduce memory and computational costs. The spiking graph self-attention and spiking rectify blocks in SGHormer explicitly capture global structure information and recover the expressive power of spiking embeddings, respectively. In experiments, SGHormer achieves comparable performances to other full-precision GTs with extremely low computational energy consumption. The results show that SGHomer makes a remarkable progress in the field of low-energy GTs.

Jintang Li, Huizhe Zhang, Ruofan Wu et al.

While contrastive self-supervised learning has become the de-facto learning paradigm for graph neural networks, the pursuit of higher task accuracy requires a larger hidden dimensionality to learn informative and discriminative full-precision representations, raising concerns about computation, memory footprint, and energy consumption burden (largely overlooked) for real-world applications. This work explores a promising direction for graph contrastive learning (GCL) with spiking neural networks (SNNs), which leverage sparse and binary characteristics to learn more biologically plausible and compact representations. We propose SpikeGCL, a novel GCL framework to learn binarized 1-bit representations for graphs, making balanced trade-offs between efficiency and performance. We provide theoretical guarantees to demonstrate that SpikeGCL has comparable expressiveness with its full-precision counterparts. Experimental results demonstrate that, with nearly 32x representation storage compression, SpikeGCL is either comparable to or outperforms many fancy state-of-the-art supervised and self-supervised methods across several graph benchmarks.

Sheng Tian, Jihai Dong, Jintang Li et al.

Anomaly detection aims to distinguish abnormal instances that deviate significantly from the majority of benign ones. As instances that appear in the real world are naturally connected and can be represented with graphs, graph neural networks become increasingly popular in tackling the anomaly detection problem. Despite the promising results, research on anomaly detection has almost exclusively focused on static graphs while the mining of anomalous patterns from dynamic graphs is rarely studied but has significant application value. In addition, anomaly detection is typically tackled from semi-supervised perspectives due to the lack of sufficient labeled data. However, most proposed methods are limited to merely exploiting labeled data, leaving a large number of unlabeled samples unexplored. In this work, we present semi-supervised anomaly detection (SAD), an end-to-end framework for anomaly detection on dynamic graphs. By a combination of a time-equipped memory bank and a pseudo-label contrastive learning module, SAD is able to fully exploit the potential of large unlabeled samples and uncover underlying anomalies on evolving graph streams. Extensive experiments on four real-world datasets demonstrate that SAD efficiently discovers anomalies from dynamic graphs and outperforms existing advanced methods even when provided with only little labeled data.

Jintang Li, Bingzhe Wu, Chengbin Hou et al.

Deep graph learning (DGL) has achieved remarkable progress in both business and scientific areas ranging from finance and e-commerce to drug and advanced material discovery. Despite the progress, applying DGL to real-world applications faces a series of reliability threats including inherent noise, distribution shift, and adversarial attacks. This survey aims to provide a comprehensive review of recent advances for improving the reliability of DGL algorithms against the above threats. In contrast to prior related surveys which mainly focus on adversarial attacks and defense, our survey covers more reliability-related aspects of DGL, i.e., inherent noise and distribution shift. Additionally, we discuss the relationships among above aspects and highlight some important issues to be explored in future research.

Liang Chen, Qibiao Peng, Jintang Li et al.

Backdoor attacks have been widely studied to hide the misclassification rules in the normal models, which are only activated when the model is aware of the specific inputs (i.e., the trigger). However, despite their success in the conventional Euclidean space, there are few studies of backdoor attacks on graph structured data. In this paper, we propose a new type of backdoor which is specific to graph data, called neighboring backdoor. Considering the discreteness of graph data, how to effectively design the triggers while retaining the model accuracy on the original task is the major challenge. To address such a challenge, we set the trigger as a single node, and the backdoor is activated when the trigger node is connected to the target node. To preserve the model accuracy, the model parameters are not allowed to be modified. Thus, when the trigger node is not connected, the model performs normally. Under these settings, in this work, we focus on generating the features of the trigger node. Two types of backdoors are proposed: (1) Linear Graph Convolution Backdoor which finds an approximation solution for the feature generation (can be viewed as an integer programming problem) by looking at the linear part of GCNs. (2) Variants of existing graph attacks. We extend current gradient-based attack methods to our backdoor attack scenario. Extensive experiments on two social networks and two citation networks datasets demonstrate that all proposed backdoors can achieve an almost 100\% attack success rate while having no impact on predictive accuracy.

Liang Chen, Jintang Li, Qibiao Peng et al.

Recent studies have shown that Graph Convolutional Networks (GCNs) are vulnerable to adversarial attacks on the graph structure. Although multiple works have been proposed to improve their robustness against such structural adversarial attacks, the reasons for the success of the attacks remain unclear. In this work, we theoretically and empirically demonstrate that structural adversarial examples can be attributed to the non-robust aggregation scheme (i.e., the weighted mean) of GCNs. Specifically, our analysis takes advantage of the breakdown point which can quantitatively measure the robustness of aggregation schemes. The key insight is that weighted mean, as the basic design of GCNs, has a low breakdown point and its output can be dramatically changed by injecting a single edge. We show that adopting the aggregation scheme with a high breakdown point (e.g., median or trimmed mean) could significantly enhance the robustness of GCNs against structural attacks. Extensive experiments on four real-world datasets demonstrate that such a simple but effective method achieves the best robustness performance compared to state-of-the-art models.