Lauri Seppäläinen

Lauri Seppäläinen, Anton Björklund, Vitus Besel et al.

Manifold visualisation techniques are commonly used to visualise high-dimensional datasets in physical sciences. In this paper we apply a recently introduced manifold visualisation method, called Slise, on datasets from physics and chemistry. Slisemap combines manifold visualisation with explainable artificial intelligence. Explainable artificial intelligence is used to investigate the decision processes of black box machine learning models and complex simulators. With Slisemap we find an embedding such that data items with similar local explanations are grouped together. Hence, Slisemap gives us an overview of the different behaviours of a black box model. This makes Slisemap into a supervised manifold visualisation method, where the patterns in the embedding reflect a target property. In this paper we show how Slisemap can be used and evaluated on physical data and that Slisemap is helpful in finding meaningful information on classification and regression models trained on these datasets.

Arash Jamshidi, Lauri Seppäläinen, Katsiaryna Haitsiukevich et al.

Machine learning models are often learned by minimising a loss function on the training data using a gradient descent algorithm. These models often suffer from overfitting, leading to a decline in predictive performance on unseen data. A standard solution is early stopping using a hold-out validation set, which halts the minimisation when the validation loss stops decreasing. However, this hold-out set reduces the data available for training. This paper presents GRADSTOP, a novel stochastic early stopping method that only uses information in the gradients, which are produced by the gradient descent algorithm ``for free.'' Our main contributions are that we estimate the Bayesian posterior by the gradient information, define the early stopping problem as drawing sample from this posterior, and use the approximated posterior to obtain a stopping criterion. Our empirical evaluation shows that GRADSTOP achieves a small loss on test data and compares favourably to a validation-set-based stopping criterion. By leveraging the entire dataset for training, our method is particularly advantageous in data-limited settings, such as transfer learning. It can be incorporated as an optional feature in gradient descent libraries with only a small computational overhead. The source code is available at https://github.com/edahelsinki/gradstop.

Lauri Seppäläinen, Jakub Kubečka, Jonas Elm et al.

Understanding how atmospheric molecular clusters form and grow is key to resolving one of the biggest uncertainties in climate modelling: the formation of new aerosol particles. While quantum chemistry offers accurate insights into these early-stage clusters, its steep computational costs limit large-scale exploration. In this work, we present a fast, interpretable, and surprisingly powerful alternative: $k$-nearest neighbour ($k$-NN) regression model. By leveraging chemically informed distance metrics, including a kernel-induced metric and one learned via metric learning for kernel regression (MLKR), we show that simple $k$-NN models can rival more complex kernel ridge regression (KRR) models in accuracy, while reducing computational time by orders of magnitude. We perform this comparison with the well-established Faber-Christensen-Huang-Lilienfeld (FCHL19) molecular descriptor, but other descriptors (e.g., FCHL18, MBDF, and CM) can be shown to have similar performance. Applied to both simple organic molecules in the QM9 benchmark set and large datasets of atmospheric molecular clusters (sulphuric acid-water and sulphuric-multibase -base systems), our $k$-NN models achieve near-chemical accuracy, scale seamlessly to datasets with over 250,000 entries, and even appears to extrapolate to larger unseen clusters with minimal error (often nearing 1 kcal/mol). With built-in interpretability and straightforward uncertainty estimation, this work positions $k$-NN as a potent tool for accelerating discovery in atmospheric chemistry and beyond.

Lauri Seppäläinen, Mudong Guo, Kai Puolamäki

Most commonly used non-linear machine learning methods are closed-box models, uninterpretable to humans. The field of explainable artificial intelligence (XAI) aims to develop tools to examine the inner workings of these closed boxes. An often-used model-agnostic approach to XAI involves using simple models as local approximations to produce so-called local explanations; examples of this approach include LIME, SHAP, and SLISEMAP. This paper shows how a large set of local explanations can be reduced to a small "proxy set" of simple models, which can act as a generative global explanation. This reduction procedure, ExplainReduce, can be formulated as an optimisation problem and approximated efficiently using greedy heuristics.