Sofía Calero

MTRL-SCI
h-index24
3papers
3citations
Novelty53%
AI Score32

3 Papers

AISep 12, 2025
Towards Fully Automated Molecular Simulations: Multi-Agent Framework for Simulation Setup and Force Field Extraction

Marko Petković, Vlado Menkovski, Sofía Calero

Automated characterization of porous materials has the potential to accelerate materials discovery, but it remains limited by the complexity of simulation setup and force field selection. We propose a multi-agent framework in which LLM-based agents can autonomously understand a characterization task, plan appropriate simulations, assemble relevant force fields, execute them and interpret their results to guide subsequent steps. As a first step toward this vision, we present a multi-agent system for literature-informed force field extraction and automated RASPA simulation setup. Initial evaluations demonstrate high correctness and reproducibility, highlighting this approach's potential to enable fully autonomous, scalable materials characterization.

MTRL-SCIMar 26, 2025
Symmetry-Informed Graph Neural Networks for Carbon Dioxide Isotherm and Adsorption Prediction in Aluminum-Substituted Zeolites

Marko Petković, José-Manuel Vicent Luna, Elīza Beate Dinne et al.

Accurately predicting adsorption properties in nanoporous materials using Deep Learning models remains a challenging task. This challenge becomes even more pronounced when attempting to generalize to structures that were not part of the training data.. In this work, we introduce SymGNN, a graph neural network architecture that leverages material symmetries to improve adsorption property prediction. By incorporating symmetry operations into the message-passing mechanism, our model enhances parameter sharing across different zeolite topologies, leading to improved generalization. We evaluate SymGNN on both interpolation and generalization tasks, demonstrating that it successfully captures key adsorption trends, including the influence of both the framework and aluminium distribution on CO$_2$ adsorption. Furthermore, we apply our model to the characterization of experimental adsorption isotherms, using a genetic algorithm to infer likely aluminium distributions. Our results highlight the effectiveness of machine learning models trained on simulations for studying real materials and suggest promising directions for fine-tuning with experimental data and generative approaches for the inverse design of multifunctional nanomaterials.

MTRL-SCIMar 19, 2024
Graph Neural Networks for Carbon Dioxide Adsorption Prediction in Aluminium-Exchanged Zeolites

Marko Petković, José Manuel Vicent-Luna, Vlado Menkovski et al.

The ability to efficiently predict adsorption properties of zeolites can be of large benefit in accelerating the design process of novel materials. The existing configuration space for these materials is wide, while existing molecular simulation methods are computationally expensive. In this work, we propose a model which is 4 to 5 orders of magnitude faster at adsorption properties compared to molecular simulations. To validate the model, we generated datasets containing various aluminium configurations for the MOR, MFI, RHO and ITW zeolites along with their heat of adsorptions and Henry coefficients for CO$_2$, obtained from Monte Carlo simulations. The predictions obtained from the Machine Learning model are in agreement with the values obtained from the Monte Carlo simulations, confirming that the model can be used for property prediction. Furthermore, we show that the model can be used for identifying adsorption sites. Finally, we evaluate the capability of our model for generating novel zeolite configurations by using it in combination with a genetic algorithm.