Jason Xu

Adithya Vellal, Saptarshi Chakraborty, Jason Xu · berkeley

Recent progress in center-based clustering algorithms combats poor local minima by implicit annealing, using a family of generalized means. These methods are variations of Lloyd's celebrated $k$-means algorithm, and are most appropriate for spherical clusters such as those arising from Gaussian data. In this paper, we bridge these algorithmic advances to classical work on hard clustering under Bregman divergences, which enjoy a bijection to exponential family distributions and are thus well-suited for clustering objects arising from a breadth of data generating mechanisms. The elegant properties of Bregman divergences allow us to maintain closed form updates in a simple and transparent algorithm, and moreover lead to new theoretical arguments for establishing finite sample bounds that relax the bounded support assumption made in the existing state of the art. Additionally, we consider thorough empirical analyses on simulated experiments and a case study on rainfall data, finding that the proposed method outperforms existing peer methods in a variety of non-Gaussian data settings.

Haoyu Jiang, Jason Xu

Stochastic versions of proximal methods have gained much attention in statistics and machine learning. These algorithms tend to admit simple, scalable forms, and enjoy numerical stability via implicit updates. In this work, we propose and analyze a stochastic version of the recently proposed proximal distance algorithm, a class of iterative optimization methods that recover a desired constrained estimation problem as a penalty parameter $ρ\rightarrow \infty$. By uncovering connections to related stochastic proximal methods and interpreting the penalty parameter as the learning rate, we justify heuristics used in practical manifestations of the proximal distance method, establishing their convergence guarantees for the first time. Moreover, we extend recent theoretical devices to establish finite error bounds and a complete characterization of convergence rates regimes. We validate our analysis via a thorough empirical study, also showing that unsurprisingly, the proposed method outpaces batch versions on popular learning tasks.

Sam Rosen, Jason Xu

We generalize finite-sample bounds for convex clustering to the setting where affinity weights appearing in the objective correspond to a general connected graph. These bounds and their analysis lead to a better understanding of clustering behavior under various implied connectivity structures behind the data and to new rates of convergence for centroid recovery. The new theoretical framework is based on random walks, which allow application of concentration inequalities related to random graph models, and formalizes the relationship between the clustering performance and the connectivity of the graph structures. Through the form of the bound and empirical results, we argue proper tuning of hyperparameters to convex clustering problems should also include tuning of input affinity weights.

Debolina Paul, Saptarshi Chakraborty, Swagatam Das et al.

Recent advances in center-based clustering continue to improve upon the drawbacks of Lloyd's celebrated $k$-means algorithm over $60$ years after its introduction. Various methods seek to address poor local minima, sensitivity to outliers, and data that are not well-suited to Euclidean measures of fit, but many are supported largely empirically. Moreover, combining such approaches in a piecemeal manner can result in ad hoc methods, and the limited theoretical results supporting each individual contribution may no longer hold. Toward addressing these issues in a principled way, this paper proposes a cohesive robust framework for center-based clustering under a general class of dissimilarity measures. In particular, we present a rigorous theoretical treatment within a Median-of-Means (MoM) estimation framework, showing that it subsumes several popular $k$-means variants. In addition to unifying existing methods, we derive uniform concentration bounds that complete their analyses, and bridge these results to the MoM framework via Dudley's chaining arguments. Importantly, we neither require any assumptions on the distribution of the outlying observations nor on the relative number of observations $n$ to features $p$. We establish strong consistency and an error rate of $O(n^{-1/2})$ under mild conditions, surpassing the best-known results in the literature. The methods are empirically validated thoroughly on real and synthetic datasets.

Mark He, Dylan Lu, Jason Xu et al.

We introduce a novel model for multilayer weighted networks that accounts for global noise in addition to local signals. The model is similar to a multilayer stochastic blockmodel (SBM), but the key difference is that between-block interactions independent across layers are common for the whole system, which we call ambient noise. A single block is also characterized by these fixed ambient parameters to represent members that do not belong anywhere else. This approach allows simultaneous clustering and typologizing of blocks into signal or noise in order to better understand their roles in the overall system, which is not accounted for by existing Blockmodels. We employ a novel application of hierarchical variational inference to jointly detect and differentiate types of blocks. We call this model for multilayer weighted networks the Stochastic Block (with) Ambient Noise Model (SBANM) and develop an associated community detection algorithm. We apply this method to subjects in the Philadelphia Neurodevelopmental Cohort to discover communities of subjects with co-occurrent psychopathologies in relation to psychosis.

Debolina Paul, Saptarshi Chakraborty, Swagatam Das et al.

Kernel $k$-means clustering is a powerful tool for unsupervised learning of non-linearly separable data. Since the earliest attempts, researchers have noted that such algorithms often become trapped by local minima arising from non-convexity of the underlying objective function. In this paper, we generalize recent results leveraging a general family of means to combat sub-optimal local solutions to the kernel and multi-kernel settings. Called Kernel Power $k$-Means, our algorithm makes use of majorization-minimization (MM) to better solve this non-convex problem. We show the method implicitly performs annealing in kernel feature space while retaining efficient, closed-form updates, and we rigorously characterize its convergence properties both from computational and statistical points of view. In particular, we characterize the large sample behavior of the proposed method by establishing strong consistency guarantees. Its merits are thoroughly validated on a suite of simulated datasets and real data benchmarks that feature non-linear and multi-view separation.

Zhiyue Zhang, Kenneth Lange, Jason Xu

Clustering, a fundamental activity in unsupervised learning, is notoriously difficult when the feature space is high-dimensional. Fortunately, in many realistic scenarios, only a handful of features are relevant in distinguishing clusters. This has motivated the development of sparse clustering techniques that typically rely on k-means within outer algorithms of high computational complexity. Current techniques also require careful tuning of shrinkage parameters, further limiting their scalability. In this paper, we propose a novel framework for sparse k-means clustering that is intuitive, simple to implement, and competitive with state-of-the-art algorithms. We show that our algorithm enjoys consistency and convergence guarantees. Our core method readily generalizes to several task-specific algorithms such as clustering on subsets of attributes and in partially observed data settings. We showcase these contributions thoroughly via simulated experiments and real data benchmarks, including a case study on protein expression in trisomic mice.

Saptarshi Chakraborty, Debolina Paul, Swagatam Das et al.

Despite its well-known shortcomings, $k$-means remains one of the most widely used approaches to data clustering. Current research continues to tackle its flaws while attempting to preserve its simplicity. Recently, the \textit{power $k$-means} algorithm was proposed to avoid trapping in local minima by annealing through a family of smoother surfaces. However, the approach lacks theoretical justification and fails in high dimensions when many features are irrelevant. This paper addresses these issues by introducing \textit{entropy regularization} to learn feature relevance while annealing. We prove consistency of the proposed approach and derive a scalable majorization-minimization algorithm that enjoys closed-form updates and convergence guarantees. In particular, our method retains the same computational complexity of $k$-means and power $k$-means, but yields significant improvements over both. Its merits are thoroughly assessed on a suite of real and synthetic data experiments.

Adam Gustafson, Matthew Hirn, Kitty Mohammed et al.

One means of fitting functions to high-dimensional data is by providing smoothness constraints. Recently, the following smooth function approximation problem was proposed: given a finite set $E \subset \mathbb{R}^d$ and a function $f: E \rightarrow \mathbb{R}$, interpolate the given information with a function $\widehat{f} \in \dot{C}^{1, 1}(\mathbb{R}^d)$ (the class of first-order differentiable functions with Lipschitz gradients) such that $\widehat{f}(a) = f(a)$ for all $a \in E$, and the value of $\mathrm{Lip}(\nabla \widehat{f})$ is minimal. An algorithm is provided that constructs such an approximating function $\widehat{f}$ and estimates the optimal Lipschitz constant $\mathrm{Lip}(\nabla \widehat{f})$ in the noiseless setting. We address statistical aspects of reconstructing the approximating function $\widehat{f}$ from a closely-related class $C^{1, 1}(\mathbb{R}^d)$ given samples from noisy data. We observe independent and identically distributed samples $y(a) = f(a) + ξ(a)$ for $a \in E$, where $ξ(a)$ is a noise term and the set $E \subset \mathbb{R}^d$ is fixed and known. We obtain uniform bounds relating the empirical risk and true risk over the class $\mathcal{F}_{\widetilde{M}} = \{f \in C^{1, 1}(\mathbb{R}^d) \mid \mathrm{Lip}(\nabla f) \leq \widetilde{M}\}$, where the quantity $\widetilde{M}$ grows with the number of samples at a rate governed by the metric entropy of the class $C^{1, 1}(\mathbb{R}^d)$. Finally, we provide an implementation using Vaidya's algorithm, supporting our results via numerical experiments on simulated data.

Jiazhuo Wang, Jason Xu, Xuejun Wang

Deep learning has achieved impressive results on many problems. However, it requires high degree of expertise or a lot of experience to tune well the hyperparameters, and such manual tuning process is likely to be biased. Moreover, it is not practical to try out as many different hyperparameter configurations in deep learning as in other machine learning scenarios, because evaluating each single hyperparameter configuration in deep learning would mean training a deep neural network, which usually takes quite long time. Hyperband algorithm achieves state-of-the-art performance on various hyperparameter optimization problems in the field of deep learning. However, Hyperband algorithm does not utilize history information of previous explored hyperparameter configurations, thus the solution found is suboptimal. We propose to combine Hyperband algorithm with Bayesian optimization (which does not ignore history when sampling next trial configuration). Experimental results show that our combination approach is superior to other hyperparameter optimization approaches including Hyperband algorithm.

Jason Xu, Eric C. Chi, Kenneth Lange

Estimation in generalized linear models (GLM) is complicated by the presence of constraints. One can handle constraints by maximizing a penalized log-likelihood. Penalties such as the lasso are effective in high dimensions, but often lead to unwanted shrinkage. This paper explores instead penalizing the squared distance to constraint sets. Distance penalties are more flexible than algebraic and regularization penalties, and avoid the drawback of shrinkage. To optimize distance penalized objectives, we make use of the majorization-minimization principle. Resulting algorithms constructed within this framework are amenable to acceleration and come with global convergence guarantees. Applications to shape constraints, sparse regression, and rank-restricted matrix regression on synthetic and real data showcase strong empirical performance, even under non-convex constraints.

Jason Xu, Eric C. Chi, Meng Yang et al.

The classical multi-set split feasibility problem seeks a point in the intersection of finitely many closed convex domain constraints, whose image under a linear mapping also lies in the intersection of finitely many closed convex range constraints. Split feasibility generalizes important inverse problems including convex feasibility, linear complementarity, and regression with constraint sets. When a feasible point does not exist, solution methods that proceed by minimizing a proximity function can be used to obtain optimal approximate solutions to the problem. We present an extension of the proximity function approach that generalizes the linear split feasibility problem to allow for non-linear mappings. Our algorithm is based on the principle of majorization-minimization, is amenable to quasi-Newton acceleration, and comes complete with convergence guarantees under mild assumptions. Furthermore, we show that the Euclidean norm appearing in the proximity function of the non-linear split feasibility problem can be replaced by arbitrary Bregman divergences. We explore several examples illustrating the merits of non-linear formulations over the linear case, with a focus on optimization for intensity-modulated radiation therapy.

Nicholas J. Foti, Jason Xu, Dillon Laird et al.

Variational inference algorithms have proven successful for Bayesian analysis in large data settings, with recent advances using stochastic variational inference (SVI). However, such methods have largely been studied in independent or exchangeable data settings. We develop an SVI algorithm to learn the parameters of hidden Markov models (HMMs) in a time-dependent data setting. The challenge in applying stochastic optimization in this setting arises from dependencies in the chain, which must be broken to consider minibatches of observations. We propose an algorithm that harnesses the memory decay of the chain to adaptively bound errors arising from edge effects. We demonstrate the effectiveness of our algorithm on synthetic experiments and a large genomics dataset where a batch algorithm is computationally infeasible.