Bowen Zheng

Kun Luo, Bowen Zheng, Shidong Lv et al.

Prostate cancer is the second most common cancer in males worldwide, and mpMRI is commonly used for diagnosis. However, interpreting mpMRI is challenging and requires expertise from radiologists. This highlights the urgent need for automated grading in mpMRI. Existing studies lack integration of clinical prior information and suffer from uneven training sample distribution due to prevalence. Therefore, we propose a solution that incorporates prior knowledge, addresses the issue of uneven medical sample distribution, and maintains high interpretability in mpMRI. Firstly, we introduce Prior Knowledge-Based Feature Extraction, which mathematically models the PI-RADS criteria for prostate cancer as diagnostic information into model training. Secondly, we propose Adaptive Recall Feedback Loss to address the extremely imbalanced data problem. This method adjusts the training dynamically based on accuracy and recall in the validation set, resulting in high accuracy and recall simultaneously in the testing set.Thirdly, we design an Enhanced Cascade Prostate Cancer Classifier that classifies prostate cancer into different levels in an interpretable way, which refines the classification results and helps with clinical intervention. Our method is validated through experiments on the PI-CAI dataset and outperforms other methods with a more balanced result in both accuracy and recall rate.

Abhimanyu Talwar, Zudi Lin, Donglai Wei et al.

One of the essential tasks in connectomics is the morphology analysis of neurons and organelles like mitochondria to shed light on their biological properties. However, these biological objects often have tangled parts or complex branching patterns, which make it hard to abstract, categorize, and manipulate their morphology. In this paper, we develop a novel topological nomenclature system to name these objects like the appellation for chemical compounds to promote neuroscience analysis based on their skeletal structures. We first convert the volumetric representation into the topology-preserving reduced graph to untangle the objects. Next, we develop nomenclature rules for pyramidal neurons and mitochondria from the reduced graph and finally learn the feature embedding for shape manipulation. In ablation studies, we quantitatively show that graphs generated by our proposed method align with the perception of experts. On 3D shape retrieval and decomposition tasks, we qualitatively demonstrate that the encoded topological nomenclature features achieve better results than state-of-the-art shape descriptors. To advance neuroscience, we will release a 3D segmentation dataset of mitochondria and pyramidal neurons reconstructed from a 100um cube electron microscopy volume with their reduced graph and topological nomenclature annotations. Code is publicly available at https://github.com/donglaiw/ibexHelper.

Sensong An, Bowen Zheng, Mikhail Y. Shalaginov et al.

Metasurfaces have shown promising potentials in shaping optical wavefronts while remaining compact compared to bulky geometric optics devices. Design of meta-atoms, the fundamental building blocks of metasurfaces, relies on trial-and-error method to achieve target electromagnetic responses. This process includes the characterization of an enormous amount of different meta-atom designs with different physical and geometric parameters, which normally demands huge computational resources. In this paper, a deep learning-based metasurface/meta-atom modeling approach is introduced to significantly reduce the characterization time while maintaining accuracy. Based on a convolutional neural network (CNN) structure, the proposed deep learning network is able to model meta-atoms with free-form 2D patterns and different lattice sizes, material refractive indexes and thicknesses. Moreover, the presented approach features the capability to predict meta-atoms' wide spectrum responses in the timescale of milliseconds, which makes it attractive for applications such as fast meta-atom/metasurface on-demand designs and optimizations.

Sensong An, Bowen Zheng, Hong Tang et al.

Metasurfaces have enabled precise electromagnetic wave manipulation with strong potential to obtain unprecedented functionalities and multifunctional behavior in flat optical devices. These advantages in precision and functionality come at the cost of tremendous difficulty in finding individual meta-atom structures based on specific requirements (commonly formulated in terms of electromagnetic responses), which makes the design of multifunctional metasurfaces a key challenge in this field. In this paper, we present a Generative Adversarial Networks (GAN) that can tackle this problem and generate meta-atom/metasurface designs to meet multifunctional design goals. Unlike conventional trial-and-error or iterative optimization design methods, this new methodology produces on-demand free-form structures involving only a single design iteration. More importantly, the network structure and the robust training process are independent of the complexity of design objectives, making this approach ideal for multifunctional device design. Additionally, the ability of the network to generate distinct classes of structures with similar electromagnetic responses but different physical features could provide added latitude to accommodate other considerations such as fabrication constraints and tolerances. We demonstrate the network's ability to produce a variety of multifunctional metasurface designs by presenting a bifocal metalens, a polarization-multiplexed beam deflector, a polarization-multiplexed metalens and a polarization-independent metalens.

Sensong An, Clayton Fowler, Bowen Zheng et al.

Metasurfaces have become a promising means for manipulating optical wavefronts in flat and high-performance optical devices. Conventional metasurface device design relies on trial-and-error methods to obtain target electromagnetic (EM) response, an approach that demands significant efforts to investigate the enormous number of possible meta-atom structures. In this paper, a deep neural network approach is introduced that significantly improves on both speed and accuracy compared to techniques currently used to assemble metasurface-based devices. Our neural network approach overcomes three key challenges that have limited previous neural-network-based design schemes: input/output vector dimensional mismatch, accurate EM-wave phase prediction, as well as adaptation to 3-D dielectric structures, and can be generically applied to a wide variety of metasurface device designs across the entire electromagnetic spectrum. Using this new methodology, examples of neural networks capable of producing on-demand designs for meta-atoms, metasurface filters, and phase-change reconfigurable metasurfaces are demonstrated.