Deanna Needell

LG
h-index31
96papers
11,842citations
Novelty44%
AI Score50

96 Papers

13.0NADec 4, 2010
Compressed Sensing with Coherent and Redundant Dictionaries

Emmanuel J. Candes, Yonina C. Eldar, Deanna Needell et al.

This article presents novel results concerning the recovery of signals from undersampled data in the common situation where such signals are not sparse in an orthonormal basis or incoherent dictionary, but in a truly redundant dictionary. This work thus bridges a gap in the literature and shows not only that compressed sensing is viable in this context, but also that accurate recovery is possible via an L1-analysis optimization problem. We introduce a condition on the measurement/sensing matrix, which is a natural generalization of the now well-known restricted isometry property, and which guarantees accurate recovery of signals that are nearly sparse in (possibly) highly overcomplete and coherent dictionaries. This condition imposes no incoherence restriction on the dictionary and our results may be the first of this kind. We discuss practical examples and the implications of our results on those applications, and complement our study by demonstrating the potential of L1-analysis for such problems.

24.1NAApr 17, 2008
CoSaMP: Iterative signal recovery from incomplete and inaccurate samples

D. Needell, J. A. Tropp

Compressive sampling offers a new paradigm for acquiring signals that are compressible with respect to an orthonormal basis. The major algorithmic challenge in compressive sampling is to approximate a compressible signal from noisy samples. This paper describes a new iterative recovery algorithm called CoSaMP that delivers the same guarantees as the best optimization-based approaches. Moreover, this algorithm offers rigorous bounds on computational cost and storage. It is likely to be extremely efficient for practical problems because it requires only matrix-vector multiplies with the sampling matrix. For many cases of interest, the running time is just O(N*log^2(N)), where N is the length of the signal.

11.7NADec 9, 2007
Signal Recovery from Incomplete and Inaccurate Measurements via Regularized Orthogonal Matching Pursuit

Deanna Needell, Roman Vershynin

We demonstrate a simple greedy algorithm that can reliably recover a d-dimensional vector v from incomplete and inaccurate measurements x. Here our measurement matrix is an N by d matrix with N much smaller than d. Our algorithm, Regularized Orthogonal Matching Pursuit (ROMP), seeks to close the gap between two major approaches to sparse recovery. It combines the speed and ease of implementation of the greedy methods with the strong guarantees of the convex programming methods. For any measurement matrix that satisfies a Uniform Uncertainty Principle, ROMP recovers a signal with O(n) nonzeros from its inaccurate measurements x in at most n iterations, where each iteration amounts to solving a Least Squares Problem. The noise level of the recovery is proportional to the norm of the error, up to a log factor. In particular, if the error vanishes the reconstruction is exact. This stability result extends naturally to the very accurate recovery of approximately sparse signals.

9.2NAFeb 12, 2011
Acceleration of Randomized Kaczmarz Method via the Johnson-Lindenstrauss Lemma

Yonina C. Eldar, Deanna Needell

The Kaczmarz method is an algorithm for finding the solution to an overdetermined consistent system of linear equations Ax=b by iteratively projecting onto the solution spaces. The randomized version put forth by Strohmer and Vershynin yields provably exponential convergence in expectation, which for highly overdetermined systems even outperforms the conjugate gradient method. In this article we present a modified version of the randomized Kaczmarz method which at each iteration selects the optimal projection from a randomly chosen set, which in most cases significantly improves the convergence rate. We utilize a Johnson-Lindenstrauss dimension reduction technique to keep the runtime on the same order as the original randomized version, adding only extra preprocessing time. We present a series of empirical studies which demonstrate the remarkable acceleration in convergence to the solution using this modified approach.

1.2NADec 11, 2008
Greedy Signal Recovery Review

D. Needell, J. A. Tropp, R. Vershynin

The two major approaches to sparse recovery are L1-minimization and greedy methods. Recently, Needell and Vershynin developed Regularized Orthogonal Matching Pursuit (ROMP) that has bridged the gap between these two approaches. ROMP is the first stable greedy algorithm providing uniform guarantees. Even more recently, Needell and Tropp developed the stable greedy algorithm Compressive Sampling Matching Pursuit (CoSaMP). CoSaMP provides uniform guarantees and improves upon the stability bounds and RIC requirements of ROMP. CoSaMP offers rigorous bounds on computational cost and storage. In many cases, the running time is just O(NlogN), where N is the ambient dimension of the signal. This review summarizes these major advances.

5.1NAFeb 1, 2018
Convergence properties of the randomized extended Gauss-Seidel and Kaczmarz methods

Anna Ma, Deanna Needell, Aaditya Ramdas

The Kaczmarz and Gauss-Seidel methods both solve a linear system $\bf{X}\bfβ = \bf{y}$ by iteratively refining the solution estimate. Recent interest in these methods has been sparked by a proof of Strohmer and Vershynin which shows the randomized Kaczmarz method converges linearly in expectation to the solution. Lewis and Leventhal then proved a similar result for the randomized Gauss-Seidel algorithm. However, the behavior of both methods depends heavily on whether the system is under or overdetermined, and whether it is consistent or not. Here we provide a unified theory of both methods, their variants for these different settings, and draw connections between both approaches. In doing so, we also provide a proof that an extended version of randomized Gauss-Seidel converges linearly to the least norm solution in the underdetermined case (where the usual randomized Gauss Seidel fails to converge). We detail analytically and empirically the convergence properties of both methods and their extended variants in all possible system settings. With this result, a complete and rigorous theory of both methods is furnished.

6.9CVMar 12, 2013
Stable image reconstruction using total variation minimization

Deanna Needell, Rachel Ward

This article presents near-optimal guarantees for accurate and robust image recovery from under-sampled noisy measurements using total variation minimization. In particular, we show that from O(slog(N)) nonadaptive linear measurements, an image can be reconstructed to within the best s-term approximation of its gradient up to a logarithmic factor, and this factor can be removed by taking slightly more measurements. Along the way, we prove a strengthened Sobolev inequality for functions lying in the null space of suitably incoherent matrices.

5.1ITJun 10, 2013
Super-resolution via superset selection and pruning

Laurent Demanet, Deanna Needell, Nam Nguyen

We present a pursuit-like algorithm that we call the "superset method" for recovery of sparse vectors from consecutive Fourier measurements in the super-resolution regime. The algorithm has a subspace identification step that hinges on the translation invariance of the Fourier transform, followed by a removal step to estimate the solution's support. The superset method is always successful in the noiseless regime (unlike L1-minimization) and generalizes to higher dimensions (unlike the matrix pencil method). Relative robustness to noise is demonstrated numerically.

1.2NAMay 11, 2017
Rows vs. Columns: Randomized Kaczmarz or Gauss-Seidel for Ridge Regression

Ahmed Hefny, Deanna Needell, Aaditya Ramdas

The Kaczmarz and Gauss-Seidel methods aim to solve a linear $m \times n$ system $\boldsymbol{X} \boldsymbolβ = \boldsymbol{y}$ by iteratively refining the solution estimate; the former uses random rows of $\boldsymbol{X}$ {to update $\boldsymbolβ$ given the corresponding equations} and the latter uses random columns of $\boldsymbol{X}$ {to update corresponding coordinates in $\boldsymbolβ$}. Interest in these methods was recently revitalized by a proof of Strohmer and Vershynin showing linear convergence in expectation for a \textit{randomized} Kaczmarz method variant (RK), and a similar result for the randomized Gauss-Seidel algorithm (RGS) was later proved by Lewis and Leventhal. Recent work unified the analysis of these algorithms for the overcomplete and undercomplete systems, showing convergence to the ordinary least squares (OLS) solution and the minimum Euclidean norm solution respectively. This paper considers the natural follow-up to the OLS problem, ridge regression, which solves $(\boldsymbol{X}^* \boldsymbol{X} + λ\boldsymbol{I}) \boldsymbolβ = \boldsymbol{X}^* \boldsymbol{y}$. We present particular variants of RK and RGS for solving this system and derive their convergence rates. We compare these to a recent proposal by Ivanov and Zhdanov to solve this system, that can be interpreted as randomly sampling both rows and columns, which we argue is often suboptimal. Instead, we claim that one should always use RGS (columns) when $m > n$ and RK (rows) when $m < n$. This difference in behavior is simply related to the minimum eigenvalue of two related positive semidefinite matrices, $\boldsymbol{X}^* \boldsymbol{X} + λ\boldsymbol{I}_n$ and $\boldsymbol{X} \boldsymbol{X}^* + λ\boldsymbol{I}_m$ when $m > n$ or $m < n$.

5.1NAAug 1, 2014
Greedy Signal Space Methods for incoherence and beyond

Raja Giryes, Deanna Needell

Compressive sampling (CoSa) has provided many methods for signal recovery of signals compressible with respect to an orthonormal basis. However, modern applications have sparked the emergence of approaches for signals not sparse in an orthonormal basis but in some arbitrary, perhaps highly overcomplete, dictionary. Recently, several "signal-space" greedy methods have been proposed to address signal recovery in this setting. However, such methods inherently rely on the existence of fast and accurate projections which allow one to identify the most relevant atoms in a dictionary for any given signal, up to a very strict accuracy. When the dictionary is highly overcomplete, no such projections are currently known; the requirements on such projections do not even hold for incoherent or well-behaved dictionaries. In this work, we provide an alternate analysis for signal space greedy methods which enforce assumptions on these projections which hold in several settings including those when the dictionary is incoherent or structurally coherent. These results align more closely with traditional results in the standard CoSa literature and improve upon previous work in the signal space setting.

1.2NAApr 1, 2012
Two-subspace Projection Method for Coherent Overdetermined Systems (Technical Report)

Deanna Needell, Rachel Ward

In this technical report we present a Projection onto Convex Sets (POCS) type algorithm for solving systems of linear equations. POCS methods have found many applications ranging from computer tomography to digital signal and image processing. The Kaczmarz method is one of the most popular solvers for overdetermined systems of linear equations due to its speed and simplicity. Here we introduce and analyze an extension of the Kaczmarz method which iteratively projects the estimate onto a solution space given from two randomly selected rows. We show that this projection algorithm provides exponential convergence to the solution in expectation. The convergence rate significantly improves upon that of the standard randomized Kaczmarz method when the system has coherent rows. We also show that the method is robust to noise, and converges exponentially in expectation to the noise floor. Experimental results are provided which confirm that in the coherent case our method significantly outperforms the randomized Kaczmarz method.

1.2NAJan 4, 2018
An algebraic perspective on integer sparse recovery

Lenny Fukshansky, Deanna Needell, Benny Sudakov

Compressed sensing is a relatively new mathematical paradigm that shows a small number of linear measurements are enough to efficiently reconstruct a large dimensional signal under the assumption the signal is sparse. Applications for this technology are ubiquitous, ranging from wireless communications to medical imaging, and there is now a solid foundation of mathematical theory and algorithms to robustly and efficiently reconstruct such signals. However, in many of these applications, the signals of interest do not only have a sparse representation, but have other structure such as lattice-valued coefficients. While there has been a small amount of work in this setting, it is still not very well understood how such extra information can be utilized during sampling and reconstruction. Here, we explore the problem of integer sparse reconstruction, lending insight into when this knowledge can be useful, and what types of sampling designs lead to robust reconstruction guarantees. We use a combination of combinatorial, probabilistic and number-theoretic methods to discuss existence and some constructions of such sensing matrices with concrete examples. We also prove sparse versions of Minkowski's Convex Body and Linear Forms theorems that exhibit some limitations of this framework.

1.2NASep 2, 2014
Block Kaczmarz Method with Inequalities

Jonathan Briskman, Deanna Needell

The randomized Kaczmarz method is an iterative algorithm that solves overdetermined systems of linear equations. Recently, the method was extended to systems of equalities and inequalities by Leventhal and Lewis. Even more recently, Needell and Tropp provided an analysis of a block version of the method for systems of linear equations. This paper considers the use of a block type method for systems of mixed equalities and inequalities, bridging these two bodies of work. We show that utilizing a matrix paving over the equalities of the system can lead to significantly improved convergence, and prove a linear convergence rate as in the standard block method. We also demonstrate that using blocks of inequalities offers similar improvement only when the system satisfies a certain geometric property. We support the theoretical analysis with several experimental results.

1.2NAJan 9, 2019
Iterative methods for solving factorized linear systems

Anna Ma, Deanna Needell, Aaditya Ramdas

Stochastic iterative algorithms such as the Kaczmarz and Gauss-Seidel methods have gained recent attention because of their speed, simplicity, and the ability to approximately solve large-scale linear systems of equations without needing to access the entire matrix. In this work, we consider the setting where we wish to solve a linear system in a large matrix X that is stored in a factorized form, X = UV; this setting either arises naturally in many applications or may be imposed when working with large low-rank datasets for reasons of space required for storage. We propose a variant of the randomized Kaczmarz method for such systems that takes advantage of the factored form, and avoids computing X. We prove an exponential convergence rate and supplement our theoretical guarantees with experimental evidence demonstrating that the factored variant yields significant acceleration in convergence.

1.2NAJan 7, 2019
Stochastic Gradient Descent for Linear Systems with Missing Data

Anna Ma, Deanna Needell

Traditional methods for solving linear systems have quickly become impractical due to an increase in the size of available data. Utilizing massive amounts of data is further complicated when the data is incomplete or has missing entries. In this work, we address the obstacles presented when working with large data and incomplete data simultaneously. In particular, we propose to adapt the Stochastic Gradient Descent method to address missing data in linear systems. Our proposed algorithm, the Stochastic Gradient Descent for Missing Data method (mSGD), is introduced and theoretical convergence guarantees are provided. In addition, we include numerical experiments on simulated and real world data that demonstrate the usefulness of our method.

1.2ITDec 30, 2015
Methods for Quantized Compressed Sensing

Hao-Jun Michael Shi, Mindy Case, Xiaoyi Gu et al.

In this paper, we compare and catalog the performance of various greedy quantized compressed sensing algorithms that reconstruct sparse signals from quantized compressed measurements. We also introduce two new greedy approaches for reconstruction: Quantized Compressed Sampling Matching Pursuit (QCoSaMP) and Adaptive Outlier Pursuit for Quantized Iterative Hard Thresholding (AOP-QIHT). We compare the performance of greedy quantized compressed sensing algorithms for a given bit-depth, sparsity, and noise level.

1.2NAApr 1, 2010
Mixed Operators in Compressed Sensing

Matthew A. Herman, Deanna Needell

Applications of compressed sensing motivate the possibility of using different operators to encode and decode a signal of interest. Since it is clear that the operators cannot be too different, we can view the discrepancy between the two matrices as a perturbation. The stability of L1-minimization and greedy algorithms to recover the signal in the presence of additive noise is by now well-known. Recently however, work has been done to analyze these methods with noise in the measurement matrix, which generates a multiplicative noise term. This new framework of generalized perturbations (i.e., both additive and multiplicative noise) extends the prior work on stable signal recovery from incomplete and inaccurate measurements of Candes, Romberg and Tao using Basis Pursuit (BP), and of Needell and Tropp using Compressive Sampling Matching Pursuit (CoSaMP). We show, under reasonable assumptions, that the stability of the reconstructed signal by both BP and CoSaMP is limited by the noise level in the observation. Our analysis extends easily to arbitrary greedy methods.

1.2NAOct 26, 2018
On Motzkin's Method for Inconsistent Linear Systems

Jamie Haddock, Deanna Needell

Iterative linear solvers have gained recent popularity due to their computational efficiency and low memory footprint for large-scale linear systems. The relaxation method, or Motzkin's method, can be viewed as an iterative method that projects the current estimation onto the solution hyperplane corresponding to the most violated constraint. Although this leads to an optimal selection strategy for consistent systems, for inconsistent least square problems, the strategy presents a tradeoff between convergence rate and solution accuracy. We provide a theoretical analysis that shows Motzkin's method offers an initially accelerated convergence rate and this acceleration depends on the dynamic range of the residual. We quantify this acceleration for Gaussian systems as a concrete example. Lastly, we include experimental evidence on real and synthetic systems that support the analysis.

17.2MLAug 17, 2022
Geometric Scattering on Measure Spaces

Joyce Chew, Matthew Hirn, Smita Krishnaswamy et al.

The scattering transform is a multilayered, wavelet-based transform initially introduced as a model of convolutional neural networks (CNNs) that has played a foundational role in our understanding of these networks' stability and invariance properties. Subsequently, there has been widespread interest in extending the success of CNNs to data sets with non-Euclidean structure, such as graphs and manifolds, leading to the emerging field of geometric deep learning. In order to improve our understanding of the architectures used in this new field, several papers have proposed generalizations of the scattering transform for non-Euclidean data structures such as undirected graphs and compact Riemannian manifolds without boundary. In this paper, we introduce a general, unified model for geometric scattering on measure spaces. Our proposed framework includes previous work on geometric scattering as special cases but also applies to more general settings such as directed graphs, signed graphs, and manifolds with boundary. We propose a new criterion that identifies to which groups a useful representation should be invariant and show that this criterion is sufficient to guarantee that the scattering transform has desirable stability and invariance properties. Additionally, we consider finite measure spaces that are obtained from randomly sampling an unknown manifold. We propose two methods for constructing a data-driven graph on which the associated graph scattering transform approximates the scattering transform on the underlying manifold. Moreover, we use a diffusion-maps based approach to prove quantitative estimates on the rate of convergence of one of these approximations as the number of sample points tends to infinity. Lastly, we showcase the utility of our method on spherical images, directed graphs, and on high-dimensional single-cell data.

3.3NAJul 24, 2014
Near Oracle Performance and Block Analysis of Signal Space Greedy Methods

Raja Giryes, Deanna Needell

Compressive sampling (CoSa) is a new methodology which demonstrates that sparse signals can be recovered from a small number of linear measurements. Greedy algorithms like CoSaMP have been designed for this recovery, and variants of these methods have been adapted to the case where sparsity is with respect to some arbitrary dictionary rather than an orthonormal basis. In this work we present an analysis of the so-called Signal Space CoSaMP method when the measurements are corrupted with mean-zero white Gaussian noise. We establish near-oracle performance for recovery of signals sparse in some arbitrary dictionary. In addition, we analyze the block variant of the method for signals whose supports obey a block structure, extending the method into the model-based compressed sensing framework. Numerical experiments confirm that the block method significantly outperforms the standard method in these settings.

15.1LGAug 20, 2022Code
Matrix Completion with Cross-Concentrated Sampling: Bridging Uniform Sampling and CUR Sampling

HanQin Cai, Longxiu Huang, Pengyu Li et al.

While uniform sampling has been widely studied in the matrix completion literature, CUR sampling approximates a low-rank matrix via row and column samples. Unfortunately, both sampling models lack flexibility for various circumstances in real-world applications. In this work, we propose a novel and easy-to-implement sampling strategy, coined Cross-Concentrated Sampling (CCS). By bridging uniform sampling and CUR sampling, CCS provides extra flexibility that can potentially save sampling costs in applications. In addition, we also provide a sufficient condition for CCS-based matrix completion. Moreover, we propose a highly efficient non-convex algorithm, termed Iterative CUR Completion (ICURC), for the proposed CCS model. Numerical experiments verify the empirical advantages of CCS and ICURC against uniform sampling and its baseline algorithms, on both synthetic and real-world datasets.

11.8LGJun 21, 2022Code
The Manifold Scattering Transform for High-Dimensional Point Cloud Data

Joyce Chew, Holly R. Steach, Siddharth Viswanath et al.

The manifold scattering transform is a deep feature extractor for data defined on a Riemannian manifold. It is one of the first examples of extending convolutional neural network-like operators to general manifolds. The initial work on this model focused primarily on its theoretical stability and invariance properties but did not provide methods for its numerical implementation except in the case of two-dimensional surfaces with predefined meshes. In this work, we present practical schemes, based on the theory of diffusion maps, for implementing the manifold scattering transform to datasets arising in naturalistic systems, such as single cell genetics, where the data is a high-dimensional point cloud modeled as lying on a low-dimensional manifold. We show that our methods are effective for signal classification and manifold classification tasks.

14.1LGJul 17, 2022
SP2: A Second Order Stochastic Polyak Method

Shuang Li, William J. Swartworth, Martin Takáč et al.

Recently the "SP" (Stochastic Polyak step size) method has emerged as a competitive adaptive method for setting the step sizes of SGD. SP can be interpreted as a method specialized to interpolated models, since it solves the interpolation equations. SP solves these equation by using local linearizations of the model. We take a step further and develop a method for solving the interpolation equations that uses the local second-order approximation of the model. Our resulting method SP2 uses Hessian-vector products to speed-up the convergence of SP. Furthermore, and rather uniquely among second-order methods, the design of SP2 in no way relies on positive definite Hessian matrices or convexity of the objective function. We show SP2 is very competitive on matrix completion, non-convex test problems and logistic regression. We also provide a convergence theory on sums-of-quadratics.

9.8LGJun 16, 2023
Training shallow ReLU networks on noisy data using hinge loss: when do we overfit and is it benign?

Erin George, Michael Murray, William Swartworth et al.

We study benign overfitting in two-layer ReLU networks trained using gradient descent and hinge loss on noisy data for binary classification. In particular, we consider linearly separable data for which a relatively small proportion of labels are corrupted or flipped. We identify conditions on the margin of the clean data that give rise to three distinct training outcomes: benign overfitting, in which zero loss is achieved and with high probability test data is classified correctly; overfitting, in which zero loss is achieved but test data is misclassified with probability lower bounded by a constant; and non-overfitting, in which clean points, but not corrupt points, achieve zero loss and again with high probability test data is classified correctly. Our analysis provides a fine-grained description of the dynamics of neurons throughout training and reveals two distinct phases: in the first phase clean points achieve close to zero loss, in the second phase clean points oscillate on the boundary of zero loss while corrupt points either converge towards zero loss or are eventually zeroed by the network. We prove these results using a combinatorial approach that involves bounding the number of clean versus corrupt updates across these phases of training.

8.7LGDec 23, 2022
A Convergence Rate for Manifold Neural Networks

Joyce Chew, Deanna Needell, Michael Perlmutter

High-dimensional data arises in numerous applications, and the rapidly developing field of geometric deep learning seeks to develop neural network architectures to analyze such data in non-Euclidean domains, such as graphs and manifolds. Recent work by Z. Wang, L. Ruiz, and A. Ribeiro has introduced a method for constructing manifold neural networks using the spectral decomposition of the Laplace Beltrami operator. Moreover, in this work, the authors provide a numerical scheme for implementing such neural networks when the manifold is unknown and one only has access to finitely many sample points. The authors show that this scheme, which relies upon building a data-driven graph, converges to the continuum limit as the number of sample points tends to infinity. Here, we build upon this result by establishing a rate of convergence that depends on the intrinsic dimension of the manifold but is independent of the ambient dimension. We also discuss how the rate of convergence depends on the depth of the network and the number of filters used in each layer.

1.2SPJun 14, 2018
Sparse Randomized Kaczmarz for Support Recovery of Jointly Sparse Corrupted Multiple Measurement Vectors

Natalie Durgin, Rachel Grotheer, Chenxi Huang et al.

While single measurement vector (SMV) models have been widely studied in signal processing, there is a surging interest in addressing the multiple measurement vectors (MMV) problem. In the MMV setting, more than one measurement vector is available and the multiple signals to be recovered share some commonalities such as a common support. Applications in which MMV is a naturally occurring phenomenon include online streaming, medical imaging, and video recovery. This work presents a stochastic iterative algorithm for the support recovery of jointly sparse corrupted MMV. We present a variant of the Sparse Randomized Kaczmarz algorithm for corrupted MMV and compare our proposed method with an existing Kaczmarz type algorithm for MMV problems. We also showcase the usefulness of our approach in the online (streaming) setting and provide empirical evidence that suggests the robustness of the proposed method to the distribution of the corruption and the number of corruptions occurring.

2.4OCFeb 24, 2023
Randomized Kaczmarz in Adversarial Distributed Setting

Longxiu Huang, Xia Li, Deanna Needell

Developing large-scale distributed methods that are robust to the presence of adversarial or corrupted workers is an important part of making such methods practical for real-world problems. In this paper, we propose an iterative approach that is adversary-tolerant for convex optimization problems. By leveraging simple statistics, our method ensures convergence and is capable of adapting to adversarial distributions. Additionally, the efficiency of the proposed methods for solving convex problems is shown in simulations with the presence of adversaries. Through simulations, we demonstrate the efficiency of our approach in the presence of adversaries and its ability to identify adversarial workers with high accuracy and tolerate varying levels of adversary rates.

2.6CVAug 28, 2022Code
Automatic Infectious Disease Classification Analysis with Concept Discovery

Elena Sizikova, Joshua Vendrow, Xu Cao et al.

Automatic infectious disease classification from images can facilitate needed medical diagnoses. Such an approach can identify diseases, like tuberculosis, which remain under-diagnosed due to resource constraints and also novel and emerging diseases, like monkeypox, which clinicians have little experience or acumen in diagnosing. Avoiding missed or delayed diagnoses would prevent further transmission and improve clinical outcomes. In order to understand and trust neural network predictions, analysis of learned representations is necessary. In this work, we argue that automatic discovery of concepts, i.e., human interpretable attributes, allows for a deep understanding of learned information in medical image analysis tasks, generalizing beyond the training labels or protocols. We provide an overview of existing concept discovery approaches in medical image and computer vision communities, and evaluate representative methods on tuberculosis (TB) prediction and monkeypox prediction tasks. Finally, we propose NMFx, a general NMF formulation of interpretability by concept discovery that works in a unified way in unsupervised, weakly supervised, and supervised scenarios.

1.2NASep 4, 2014
Practical approximate projection schemes in greedy signal space methods

Chris Garnatz, Xiaoyi Gu, Alison Kingman et al.

Compressive sensing (CS) is a new signal acquisition paradigm which shows that far fewer samples are required to reconstruct sparse signals than previously thought. Although most of the literature focuses on signals sparse in a fixed orthonormal basis, recently the Signal Space CoSaMP (SSCoSaMP) greedy method was developed for the reconstruction of signals compressible in arbitrary redundant dictionaries. The algorithm itself needs access to approximate sparse projection schemes, which have been difficult to obtain and analyze. This paper investigates the use of several different projection schemes and catalogs for what types of signals each scheme can successfully be utilized. In addition, we present novel hybrid projection methods which outperform all other schemes on a wide variety of signal classes.

1.4LGNov 14, 2012
Spectral Clustering: An empirical study of Approximation Algorithms and its Application to the Attrition Problem

B. Cung, T. Jin, J. Ramirez et al.

Clustering is the problem of separating a set of objects into groups (called clusters) so that objects within the same cluster are more similar to each other than to those in different clusters. Spectral clustering is a now well-known method for clustering which utilizes the spectrum of the data similarity matrix to perform this separation. Since the method relies on solving an eigenvector problem, it is computationally expensive for large datasets. To overcome this constraint, approximation methods have been developed which aim to reduce running time while maintaining accurate classification. In this article, we summarize and experimentally evaluate several approximation methods for spectral clustering. From an applications standpoint, we employ spectral clustering to solve the so-called attrition problem, where one aims to identify from a set of employees those who are likely to voluntarily leave the company from those who are not. Our study sheds light on the empirical performance of existing approximate spectral clustering methods and shows the applicability of these methods in an important business optimization related problem.

1.2NANov 12, 2015
A note on practical approximate projection schemes in signal space methods

Xiaoyi Gu, Deanna Needell, Shenyinying Tu

Compressive sensing (CS) is a new technology which allows the acquisition of signals directly in compressed form, using far fewer measurements than traditional theory dictates. Recently, many so-called signal space methods have been developed to extend this body of work to signals sparse in arbitrary dictionaries rather than orthonormal bases. In doing so, CS can be utilized in a much broader array of practical settings. Often, such approaches often rely on the ability to optimally project a signal onto a small number of dictionary atoms. Such optimal, or even approximate, projections have been difficult to derive theoretically. Nonetheless, it has been observed experimentally that conventional CS approaches can be used for such projections, and still provide accurate signal recovery. In this letter, we summarize the empirical evidence and clearly demonstrate for what signal types certain CS methods may be used as approximate projections. In addition, we provide theoretical guarantees for such methods for certain sparse signal structures. Our theoretical results match those observed in experimental studies, and we thus establish both experimentally and theoretically that these CS methods can be used in this context. \end{abstract}

2.3ITJun 10, 2013
Using Correlated Subset Structure for Compressive Sensing Recovery

Atul Divekar, Deanna Needell

Compressive sensing is a methodology for the reconstruction of sparse or compressible signals using far fewer samples than required by the Nyquist criterion. However, many of the results in compressive sensing concern random sampling matrices such as Gaussian and Bernoulli matrices. In common physically feasible signal acquisition and reconstruction scenarios such as super-resolution of images, the sensing matrix has a non-random structure with highly correlated columns. Here we present a compressive sensing recovery algorithm that exploits this correlation structure. We provide algorithmic justification as well as empirical comparisons.

7.4MLJul 8, 2023Code
Manifold Filter-Combine Networks

David R. Johnson, Joyce A. Chew, Edward De Brouwer et al.

In order to better understand manifold neural networks (MNNs), we introduce Manifold Filter-Combine Networks (MFCNs). Our filter-combine framework parallels the popular aggregate-combine paradigm for graph neural networks (GNNs) and naturally suggests many interesting families of MNNs which can be interpreted as manifold analogues of various popular GNNs. We propose a method for implementing MFCNs on high-dimensional point clouds that relies on approximating an underlying manifold by a sparse graph. We then prove that our method is consistent in the sense that it converges to a continuum limit as the number of data points tends to infinity, and we numerically demonstrate its effectiveness on real-world and synthetic data sets.

5.3LGFeb 20, 2023
Federated Gradient Matching Pursuit

Halyun Jeong, Deanna Needell, Jing Qin

Traditional machine learning techniques require centralizing all training data on one server or data hub. Due to the development of communication technologies and a huge amount of decentralized data on many clients, collaborative machine learning has become the main interest while providing privacy-preserving frameworks. In particular, federated learning (FL) provides such a solution to learn a shared model while keeping training data at local clients. On the other hand, in a wide range of machine learning and signal processing applications, the desired solution naturally has a certain structure that can be framed as sparsity with respect to a certain dictionary. This problem can be formulated as an optimization problem with sparsity constraints and solving it efficiently has been one of the primary research topics in the traditional centralized setting. In this paper, we propose a novel algorithmic framework, federated gradient matching pursuit (FedGradMP), to solve the sparsity constrained minimization problem in the FL setting. We also generalize our algorithms to accommodate various practical FL scenarios when only a subset of clients participate per round, when the local model estimation at clients could be inexact, or when the model parameters are sparse with respect to general dictionaries. Our theoretical analysis shows the linear convergence of the proposed algorithms. A variety of numerical experiments are conducted to demonstrate the great potential of the proposed framework -- fast convergence both in communication rounds and computation time for many important scenarios without sophisticated parameter tuning.

0.3CLDec 19, 2022
Continuous Semi-Supervised Nonnegative Matrix Factorization

Michael R. Lindstrom, Xiaofu Ding, Feng Liu et al.

Nonnegative matrix factorization can be used to automatically detect topics within a corpus in an unsupervised fashion. The technique amounts to an approximation of a nonnegative matrix as the product of two nonnegative matrices of lower rank. In this paper, we show this factorization can be combined with regression on a continuous response variable. In practice, the method performs better than regression done after topics are identified and retrains interpretability.

1.2ITJun 19, 2018
Compressed Anomaly Detection with Multiple Mixed Observations

Natalie Durgin, Rachel Grotheer, Chenxi Huang et al.

We consider a collection of independent random variables that are identically distributed, except for a small subset which follows a different, anomalous distribution. We study the problem of detecting which random variables in the collection are governed by the anomalous distribution. Recent work proposes to solve this problem by conducting hypothesis tests based on mixed observations (e.g. linear combinations) of the random variables. Recognizing the connection between taking mixed observations and compressed sensing, we view the problem as recovering the "support" (index set) of the anomalous random variables from multiple measurement vectors (MMVs). Many algorithms have been developed for recovering jointly sparse signals and their support from MMVs. We establish the theoretical and empirical effectiveness of these algorithms at detecting anomalies. We also extend the LASSO algorithm to an MMV version for our purpose. Further, we perform experiments on synthetic data, consisting of samples from the random variables, to explore the trade-off between the number of mixed observations per sample and the number of samples required to detect anomalies.

1.2SPJun 7, 2023
Stochastic Natural Thresholding Algorithms

Rachel Grotheer, Shuang Li, Anna Ma et al.

Sparse signal recovery is one of the most fundamental problems in various applications, including medical imaging and remote sensing. Many greedy algorithms based on the family of hard thresholding operators have been developed to solve the sparse signal recovery problem. More recently, Natural Thresholding (NT) has been proposed with improved computational efficiency. This paper proposes and discusses convergence guarantees for stochastic natural thresholding algorithms by extending the NT from the deterministic version with linear measurements to the stochastic version with a general objective function. We also conduct various numerical experiments on linear and nonlinear measurements to demonstrate the performance of StoNT.

2.3SOC-PHDec 1, 2022
Inference of Media Bias and Content Quality Using Natural-Language Processing

Zehan Chao, Denali Molitor, Deanna Needell et al.

Media bias can significantly impact the formation and development of opinions and sentiments in a population. It is thus important to study the emergence and development of partisan media and political polarization. However, it is challenging to quantitatively infer the ideological positions of media outlets. In this paper, we present a quantitative framework to infer both political bias and content quality of media outlets from text, and we illustrate this framework with empirical experiments with real-world data. We apply a bidirectional long short-term memory (LSTM) neural network to a data set of more than 1 million tweets to generate a two-dimensional ideological-bias and content-quality measurement for each tweet. We then infer a ``media-bias chart'' of (bias, quality) coordinates for the media outlets by integrating the (bias, quality) measurements of the tweets of the media outlets. We also apply a variety of baseline machine-learning methods, such as a naive-Bayes method and a support-vector machine (SVM), to infer the bias and quality values for each tweet. All of these baseline approaches are based on a bag-of-words approach. We find that the LSTM-network approach has the best performance of the examined methods. Our results illustrate the importance of leveraging word order into machine-learning methods in text analysis.

6.4NAMay 26
Stochastic Gradient Descent for Incomplete Tensor Linear Systems

Anna Ma, Deanna Needell, Alexander Xue

Solving large tensor linear systems poses significant challenges due to the high volume of data stored, and it only becomes more challenging when some of the data is missing. Recently, Ma et al. showed that this problem can be tackled using a stochastic gradient descent-based method, assuming that the missing data follows a uniform missing pattern. We adapt the technique by modifying the update direction, showing that the method is applicable under other missing data models. We prove convergence results and experimentally verify these results on synthetic data.

14.9NAMar 15, 2008
Uniform Uncertainty Principle and signal recovery via Regularized Orthogonal Matching Pursuit

Deanna Needell, Roman Vershynin

This paper seeks to bridge the two major algorithmic approaches to sparse signal recovery from an incomplete set of linear measurements -- L_1-minimization methods and iterative methods (Matching Pursuits). We find a simple regularized version of the Orthogonal Matching Pursuit (ROMP) which has advantages of both approaches: the speed and transparency of OMP and the strong uniform guarantees of the L_1-minimization. Our algorithm ROMP reconstructs a sparse signal in a number of iterations linear in the sparsity (in practice even logarithmic), and the reconstruction is exact provided the linear measurements satisfy the Uniform Uncertainty Principle.

3.8LGNov 17, 2023
Stratified-NMF for Heterogeneous Data

James Chapman, Yotam Yaniv, Deanna Needell

Non-negative matrix factorization (NMF) is an important technique for obtaining low dimensional representations of datasets. However, classical NMF does not take into account data that is collected at different times or in different locations, which may exhibit heterogeneity. We resolve this problem by solving a modified NMF objective, Stratified-NMF, that simultaneously learns strata-dependent statistics and a shared topics matrix. We develop multiplicative update rules for this novel objective and prove convergence of the objective. Then, we experiment on synthetic data to demonstrate the efficiency and accuracy of the method. Lastly, we apply our method to three real world datasets and empirically investigate their learned features.

2.3NAOct 8, 2012
Two-subspace Projection Method for Coherent Overdetermined Systems

Deanna Needell, Rachel Ward

We present a Projection onto Convex Sets (POCS) type algorithm for solving systems of linear equations. POCS methods have found many applications ranging from computer tomography to digital signal and image processing. The Kaczmarz method is one of the most popular solvers for overdetermined systems of linear equations due to its speed and simplicity. Here we introduce and analyze an extension of the Kaczmarz method that iteratively projects the estimate onto a solution space given by two randomly selected rows. We show that this projection algorithm provides exponential convergence to the solution in expectation. The convergence rate improves upon that of the standard randomized Kaczmarz method when the system has correlated rows. Experimental results confirm that in this case our method significantly outperforms the randomized Kaczmarz method.

8.0NAJan 20, 2025Code
Randomized Kaczmarz Methods with Beyond-Krylov Convergence

Michał Dereziński, Deanna Needell, Elizaveta Rebrova et al.

Randomized Kaczmarz methods form a family of linear system solvers which converge by repeatedly projecting their iterates onto randomly sampled equations. While effective in some contexts, such as highly over-determined least squares, Kaczmarz methods are traditionally deemed secondary to Krylov subspace methods, since this latter family of solvers can exploit outliers in the input's singular value distribution to attain fast convergence on ill-conditioned systems. In this paper, we introduce Kaczmarz++, an accelerated randomized block Kaczmarz algorithm that exploits outlying singular values in the input to attain a fast Krylov-style convergence. Moreover, we show that Kaczmarz++ captures large outlying singular values provably faster than popular Krylov methods, for both over- and under-determined systems. We also develop an optimized variant for positive semidefinite systems, called CD++, demonstrating empirically that it is competitive in arithmetic operations with both CG and GMRES on a collection of benchmark problems. To attain these results, we introduce several novel algorithmic improvements to the Kaczmarz framework, including adaptive momentum acceleration, Tikhonov-regularized projections, and a memoization scheme for reusing information from previously sampled equation blocks.

6.4LGNov 14, 2024
Towards a Fairer Non-negative Matrix Factorization

Lara Kassab, Erin George, Deanna Needell et al.

Topic modeling, or more broadly, dimensionality reduction, techniques provide powerful tools for uncovering patterns in large datasets and are widely applied across various domains. We investigate how Non-negative Matrix Factorization (NMF) can introduce bias in the representation of data groups, such as those defined by demographics or protected attributes. We present an approach, called Fairer-NMF, that seeks to minimize the maximum reconstruction loss for different groups relative to their size and intrinsic complexity. Further, we present two algorithms for solving this problem. The first is an alternating minimization (AM) scheme and the second is a multiplicative updates (MU) scheme which demonstrates a reduced computational time compared to AM while still achieving similar performance. Lastly, we present numerical experiments on synthetic and real datasets to evaluate the overall performance and trade-offs of Fairer-NMF

6.4LGMar 11, 2024
Benign overfitting in leaky ReLU networks with moderate input dimension

Kedar Karhadkar, Erin George, Michael Murray et al.

The problem of benign overfitting asks whether it is possible for a model to perfectly fit noisy training data and still generalize well. We study benign overfitting in two-layer leaky ReLU networks trained with the hinge loss on a binary classification task. We consider input data that can be decomposed into the sum of a common signal and a random noise component, that lie on subspaces orthogonal to one another. We characterize conditions on the signal to noise ratio (SNR) of the model parameters giving rise to benign versus non-benign (or harmful) overfitting: in particular, if the SNR is high then benign overfitting occurs, conversely if the SNR is low then harmful overfitting occurs. We attribute both benign and non-benign overfitting to an approximate margin maximization property and show that leaky ReLU networks trained on hinge loss with gradient descent (GD) satisfy this property. In contrast to prior work we do not require the training data to be nearly orthogonal. Notably, for input dimension $d$ and training sample size $n$, while results in prior work require $d = Ω(n^2 \log n)$, here we require only $d = Ω\left(n\right)$.

6.4LGMar 2, 2024
Stochastic gradient descent for streaming linear and rectified linear systems with adversarial corruptions

Halyun Jeong, Deanna Needell, Elizaveta Rebrova

We propose SGD-exp, a stochastic gradient descent approach for linear and ReLU regressions under Massart noise (adversarial semi-random corruption model) for the fully streaming setting. We show novel nearly linear convergence guarantees of SGD-exp to the true parameter with up to $50\%$ Massart corruption rate, and with any corruption rate in the case of symmetric oblivious corruptions. This is the first convergence guarantee result for robust ReLU regression in the streaming setting, and it shows the improved convergence rate over previous robust methods for $L_1$ linear regression due to a choice of an exponentially decaying step size, known for its efficiency in practice. Our analysis is based on the drift analysis of a discrete stochastic process, which could also be interesting on its own.

6.4LGDec 6, 2024Code
Differentially Private Random Feature Model

Chunyang Liao, Deanna Needell, Hayden Schaeffer et al.

Designing privacy-preserving machine learning algorithms has received great attention in recent years, especially in the setting when the data contains sensitive information. Differential privacy (DP) is a widely used mechanism for data analysis with privacy guarantees. In this paper, we produce a differentially private random feature model. Random features, which were proposed to approximate large-scale kernel machines, have been used to study privacy-preserving kernel machines as well. We consider the over-parametrized regime (more features than samples) where the non-private random feature model is learned via solving the min-norm interpolation problem, and then we apply output perturbation techniques to produce a private model. We show that our method preserves privacy and derive a generalization error bound for the method. To the best of our knowledge, we are the first to consider privacy-preserving random feature models in the over-parametrized regime and provide theoretical guarantees. We empirically compare our method with other privacy-preserving learning methods in the literature as well. Our results show that our approach is superior to the other methods in terms of generalization performance on synthetic data and benchmark data sets. Additionally, it was recently observed that DP mechanisms may exhibit and exacerbate disparate impact, which means that the outcomes of DP learning algorithms vary significantly among different groups. We show that both theoretically and empirically, random features have the potential to reduce disparate impact, and hence achieve better fairness.

2.6LGMar 13, 2024
Kernel Alignment for Unsupervised Feature Selection via Matrix Factorization

Ziyuan Lin, Deanna Needell

By removing irrelevant and redundant features, feature selection aims to find a good representation of the original features. With the prevalence of unlabeled data, unsupervised feature selection has been proven effective in alleviating the so-called curse of dimensionality. Most existing matrix factorization-based unsupervised feature selection methods are built upon subspace learning, but they have limitations in capturing nonlinear structural information among features. It is well-known that kernel techniques can capture nonlinear structural information. In this paper, we construct a model by integrating kernel functions and kernel alignment, which can be equivalently characterized as a matrix factorization problem. However, such an extension raises another issue: the algorithm performance heavily depends on the choice of kernel, which is often unknown a priori. Therefore, we further propose a multiple kernel-based learning method. By doing so, our model can learn both linear and nonlinear similarity information and automatically generate the most appropriate kernel. Experimental analysis on real-world data demonstrates that the two proposed methods outperform other classic and state-of-the-art unsupervised feature selection methods in terms of clustering results and redundancy reduction in almost all datasets tested.

9.4LGOct 22, 2025
Are Greedy Task Orderings Better Than Random in Continual Linear Regression?

Matan Tsipory, Ran Levinstein, Itay Evron et al.

We analyze task orderings in continual learning for linear regression, assuming joint realizability of training data. We focus on orderings that greedily maximize dissimilarity between consecutive tasks, a concept briefly explored in prior work but still surrounded by open questions. Using tools from the Kaczmarz method literature, we formalize such orderings and develop geometric and algebraic intuitions around them. Empirically, we demonstrate that greedy orderings converge faster than random ones in terms of the average loss across tasks, both for linear regression with random data and for linear probing on CIFAR-100 classification tasks. Analytically, in a high-rank regression setting, we prove a loss bound for greedy orderings analogous to that of random ones. However, under general rank, we establish a repetition-dependent separation. Specifically, while prior work showed that for random orderings, with or without replacement, the average loss after $k$ iterations is bounded by $\mathcal{O}(1/\sqrt{k})$, we prove that single-pass greedy orderings may fail catastrophically, whereas those allowing repetition converge at rate $\mathcal{O}(1/\sqrt[3]{k})$. Overall, we reveal nuances within and between greedy and random orderings.

2.6LGNov 27, 2024
Stratified Non-Negative Tensor Factorization

Alexander Sietsema, Zerrin Vural, James Chapman et al.

Non-negative matrix factorization (NMF) and non-negative tensor factorization (NTF) decompose non-negative high-dimensional data into non-negative low-rank components. NMF and NTF methods are popular for their intrinsic interpretability and effectiveness on large-scale data. Recent work developed Stratified-NMF, which applies NMF to regimes where data may come from different sources (strata) with different underlying distributions, and seeks to recover both strata-dependent information and global topics shared across strata. Applying Stratified-NMF to multi-modal data requires flattening across modes, and therefore loses geometric structure contained implicitly within the tensor. To address this problem, we extend Stratified-NMF to the tensor setting by developing a multiplicative update rule and demonstrating the method on text and image data. We find that Stratified-NTF can identify interpretable topics with lower memory requirements than Stratified-NMF. We also introduce a regularized version of the method and demonstrate its effects on image data.