76.8CVJun 4Code
StoryVideoQA: Scaling Deep Video Understanding with a Large-Scale, Multi-Genre and Auto-Generated DatasetZhengqian Wu, Zhixian Liu, Aodong Chen et al.
Video question answering (VideoQA) aims to answer questions about given videos. While existing approaches excel on factoid VideoQA, they struggle with deep video understanding (DVU), which requires the comprehension of complex storylines. This challenge arises from the inherent long-range video content, multi-faceted question types, and instance-level story elements, all of which constrain the scale and diversity of manually constructed DVU datasets. These difficulties constrain the scale and diversity of manually-constructed DVU dataset. To address these, we previously introduced StoryMind to automatically construct DVU datasets with balanced fine-grained topics. Though it can generate high-quality question-answer pairs (QAs) for TV series, it suffers significant performance degradation when handling longer and more complex movies. In this paper, we further design StoryMindv2, an enhanced multi-agent collaboration framework to generate high-quality DVU datasets for both TV series and movies. By integrating a novel supervisor-guided generation mechanism and a refined multi-reviewer voting strategy, the framework is utilized to construct StoryVideoQA, the largest DVU dataset to date, featuring over 363K QAs on 393.2 hours diverse story videos including TV series (avg. 1,635 seconds) and movies (avg. 7,878 seconds). Comprehensive evaluations of 20 state-of-the-art VideoQA methods on this large-scale benchmark reveal that they cannot fully maintain long-range character associations or construct a coherent understanding of complex storylines. To bridge this gap, we propose PlotTree, a novel video understanding agent, re-organizing long-range video content into a hierarchical plot structure, enabling efficient storyline reasoning on StoryVideoQA. Project page: https://github.com/nercms-mmap/StoryVideoQA/
ASFeb 22, 2023Code
Gradient Remedy for Multi-Task Learning in End-to-End Noise-Robust Speech RecognitionYuchen Hu, Chen Chen, Ruizhe Li et al.
Speech enhancement (SE) is proved effective in reducing noise from noisy speech signals for downstream automatic speech recognition (ASR), where multi-task learning strategy is employed to jointly optimize these two tasks. However, the enhanced speech learned by SE objective may not always yield good ASR results. From the optimization view, there sometimes exists interference between the gradients of SE and ASR tasks, which could hinder the multi-task learning and finally lead to sub-optimal ASR performance. In this paper, we propose a simple yet effective approach called gradient remedy (GR) to solve interference between task gradients in noise-robust speech recognition, from perspectives of both angle and magnitude. Specifically, we first project the SE task's gradient onto a dynamic surface that is at acute angle to ASR gradient, in order to remove the conflict between them and assist in ASR optimization. Furthermore, we adaptively rescale the magnitude of two gradients to prevent the dominant ASR task from being misled by SE gradient. Experimental results show that the proposed approach well resolves the gradient interference and achieves relative word error rate (WER) reductions of 9.3% and 11.1% over multi-task learning baseline, on RATS and CHiME-4 datasets, respectively. Our code is available at GitHub.
ASJul 16, 2023
Noise-aware Speech Enhancement using Diffusion Probabilistic ModelYuchen Hu, Chen Chen, Ruizhe Li et al.
With recent advances of diffusion model, generative speech enhancement (SE) has attracted a surge of research interest due to its great potential for unseen testing noises. However, existing efforts mainly focus on inherent properties of clean speech, underexploiting the varying noise information in real world. In this paper, we propose a noise-aware speech enhancement (NASE) approach that extracts noise-specific information to guide the reverse process in diffusion model. Specifically, we design a noise classification (NC) model to produce acoustic embedding as a noise conditioner to guide the reverse denoising process. Meanwhile, a multi-task learning scheme is devised to jointly optimize SE and NC tasks to enhance the noise specificity of conditioner. NASE is shown to be a plug-and-play module that can be generalized to any diffusion SE models. Experiments on VB-DEMAND dataset show that NASE effectively improves multiple mainstream diffusion SE models, especially on unseen noises.
ASJun 18, 2023
Hearing Lips in Noise: Universal Viseme-Phoneme Mapping and Transfer for Robust Audio-Visual Speech RecognitionYuchen Hu, Ruizhe Li, Chen Chen et al.
Audio-visual speech recognition (AVSR) provides a promising solution to ameliorate the noise-robustness of audio-only speech recognition with visual information. However, most existing efforts still focus on audio modality to improve robustness considering its dominance in AVSR task, with noise adaptation techniques such as front-end denoise processing. Though effective, these methods are usually faced with two practical challenges: 1) lack of sufficient labeled noisy audio-visual training data in some real-world scenarios and 2) less optimal model generality to unseen testing noises. In this work, we investigate the noise-invariant visual modality to strengthen robustness of AVSR, which can adapt to any testing noises while without dependence on noisy training data, a.k.a., unsupervised noise adaptation. Inspired by human perception mechanism, we propose a universal viseme-phoneme mapping (UniVPM) approach to implement modality transfer, which can restore clean audio from visual signals to enable speech recognition under any noisy conditions. Extensive experiments on public benchmarks LRS3 and LRS2 show that our approach achieves the state-of-the-art under various noisy as well as clean conditions. In addition, we also outperform previous state-of-the-arts on visual speech recognition task.
64.9AIJun 1
Food Noise & False Safety: A Systematic Evaluation of How LLMs Fail to Adapt to Eating Disorder Queries with Clinician FeedbackGiulia Pucci, Emily Hemendinger, Ruizhe Li et al.
Recent evidence shows that people with eating disorders (EDs) are increasingly seeking guidance, advice, and emotional support from Large Language Model (LLM)-based chat systems. Although these systems are not designed to provide clinical advice, their perceived expertise, neutrality and accessibility make them a frequent, albeit risky, source of support. This paper investigates potential patterns of interaction between users with EDs and LLMs, focusing on the potential harms arising from models that uncritically adapt to, and facilitate unsafe or self-harming user requests. We find, in consultation with clinical ED experts, that specific linguistic cues in prompts increase the likelihood of unsafe responses and, through systematically varying the degree of potential risk present in the user prompt, report the extent to which LLMs uncritically adapt to problematic, and potentially dangerous user inputs.
CLAug 28, 2023
Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application StudyYanjun Gao, Ruizhe Li, Emma Croxford et al.
Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare providers, risking diagnostic inaccuracies. While Large Language Models (LLMs) have showcased their potential in diverse language tasks, their application in the healthcare arena needs to ensure the minimization of diagnostic errors and the prevention of patient harm. In this paper, we outline an innovative approach for augmenting the proficiency of LLMs in the realm of automated diagnosis generation, achieved through the incorporation of a medical knowledge graph (KG) and a novel graph model: Dr.Knows, inspired by the clinical diagnostic reasoning process. We derive the KG from the National Library of Medicine's Unified Medical Language System (UMLS), a robust repository of biomedical knowledge. Our method negates the need for pre-training and instead leverages the KG as an auxiliary instrument aiding in the interpretation and summarization of complex medical concepts. Using real-world hospital datasets, our experimental results demonstrate that the proposed approach of combining LLMs with KG has the potential to improve the accuracy of automated diagnosis generation. More importantly, our approach offers an explainable diagnostic pathway, edging us closer to the realization of AI-augmented diagnostic decision support systems.
ASJun 18, 2023
MIR-GAN: Refining Frame-Level Modality-Invariant Representations with Adversarial Network for Audio-Visual Speech RecognitionYuchen Hu, Chen Chen, Ruizhe Li et al.
Audio-visual speech recognition (AVSR) attracts a surge of research interest recently by leveraging multimodal signals to understand human speech. Mainstream approaches addressing this task have developed sophisticated architectures and techniques for multi-modality fusion and representation learning. However, the natural heterogeneity of different modalities causes distribution gap between their representations, making it challenging to fuse them. In this paper, we aim to learn the shared representations across modalities to bridge their gap. Different from existing similar methods on other multimodal tasks like sentiment analysis, we focus on the temporal contextual dependencies considering the sequence-to-sequence task setting of AVSR. In particular, we propose an adversarial network to refine frame-level modality-invariant representations (MIR-GAN), which captures the commonality across modalities to ease the subsequent multimodal fusion process. Extensive experiments on public benchmarks LRS3 and LRS2 show that our approach outperforms the state-of-the-arts.
16.6CLApr 14
Nationality encoding in language model hidden states: Probing culturally differentiated representations in persona-conditioned academic textPaul Jackson, Ruizhe Li, Elspeth Edelstein
Large language models are increasingly used as writing tools and pedagogical resources in English for Academic Purposes, but it remains unclear whether they encode culturally differentiated representations when generating academic text. This study tests whether Gemma-3-4b-it encodes nationality-discriminative information in hidden states when generating research article introductions conditioned by British and Chinese academic personas. A corpus of 270 texts was generated from 45 prompt templates crossed with six persona conditions in a 2 x 3 design. Logistic regression probes were trained on hidden-state activations across all 35 layers, with shuffled-label baselines, a surface-text skyline classifier, cross-family tests, and sentence-level baselines used as controls. Probe-selected token positions were annotated for structural, lexical, and stance features using the Stanza NLP pipeline. The nationality probe reached 0.968 cross-validated accuracy at Layer 18, with perfect held-out classification. Nationality encoding followed a non-monotonic trajectory across layers, with structural effects strongest in the middle to upper network and lexical-domain effects peaking earlier. At high-signal token positions, British-associated patterns showed more postmodification, hedging, boosting, passive voice, and evaluative or process-oriented vocabulary, while Chinese-associated patterns showed more premodification, nominal predicates, and sociocultural or internationalisation vocabulary. However, sentence-level analysis found no significant nationality differences in the full generated surface text. The findings extend probing methodology to a sociolinguistic attribute and have practical implications for EAP and language pedagogy.
61.2CLMar 12Code
Llettuce: An Open Source Natural Language Processing Tool for the Translation of Medical Terms into Uniform Clinical EncodingJames Mitchell-White, Reza Omdivar, Benjamin Partridge et al.
This paper introduces Llettuce, an open-source tool designed to address the complexities of converting medical terms into OMOP standard concepts. Unlike existing solutions such as the Athena database search and Usagi, which struggle with semantic nuances and require substantial manual input, Llettuce leverages advanced natural language processing, including large language models and fuzzy matching, to automate and enhance the mapping process. Developed with a focus on GDPR compliance, Llettuce can be deployed locally, ensuring data protection while maintaining high performance in converting informal medical terms to standardised concepts.
IVOct 14, 2022Code
Motion-related Artefact Classification Using Patch-based Ensemble and Transfer Learning in Cardiac MRIRuizhe Li, Xin Chen
Cardiac Magnetic Resonance Imaging (MRI) plays an important role in the analysis of cardiac function. However, the acquisition is often accompanied by motion artefacts because of the difficulty of breath-hold, especially for acute symptoms patients. Therefore, it is essential to assess the quality of cardiac MRI for further analysis. Time-consuming manual-based classification is not conducive to the construction of an end-to-end computer aided diagnostic system. To overcome this problem, an automatic cardiac MRI quality estimation framework using ensemble and transfer learning is proposed in this work. Multiple pre-trained models were initialised and fine-tuned on 2-dimensional image patches sampled from the training data. In the model inference process, decisions from these models are aggregated to make a final prediction. The framework has been evaluated on CMRxMotion grand challenge (MICCAI 2022) dataset which is small, multi-class, and imbalanced. It achieved a classification accuracy of 78.8% and 70.0% on the training set (5-fold cross-validation) and a validation set, respectively. The final trained model was also evaluated on an independent test set by the CMRxMotion organisers, which achieved the classification accuracy of 72.5% and Cohen's Kappa of 0.6309 (ranked top 1 in this grand challenge). Our code is available on Github: https://github.com/ruizhe-l/CMRxMotion.
CVFeb 10Code
Semi-supervised Liver Segmentation and Patch-based Fibrosis Staging with Registration-aided Multi-parametric MRIBoya Wang, Ruizhe Li, Chao Chen et al.
Liver fibrosis poses a substantial challenge in clinical practice, emphasizing the necessity for precise liver segmentation and accurate disease staging. Based on the CARE Liver 2025 Track 4 Challenge, this study introduces a multi-task deep learning framework developed for liver segmentation (LiSeg) and liver fibrosis staging (LiFS) using multiparametric MRI. The LiSeg phase addresses the challenge of limited annotated images and the complexities of multi-parametric MRI data by employing a semi-supervised learning model that integrates image segmentation and registration. By leveraging both labeled and unlabeled data, the model overcomes the difficulties introduced by domain shifts and variations across modalities. In the LiFS phase, we employed a patchbased method which allows the visualization of liver fibrosis stages based on the classification outputs. Our approach effectively handles multimodality imaging data, limited labels, and domain shifts. The proposed method has been tested by the challenge organizer on an independent test set that includes in-distribution (ID) and out-of-distribution (OOD) cases using three-channel MRIs (T1, T2, DWI) and seven-channel MRIs (T1, T2, DWI, GED1-GED4). The code is freely available. Github link: https://github.com/mileywang3061/Care-Liver
LGJan 16Code
Spurious Rewards Paradox: Mechanistically Understanding How RLVR Activates Memorization Shortcuts in LLMsLecheng Yan, Ruizhe Li, Guanhua Chen et al.
Reinforcement Learning with Verifiable Rewards (RLVR) is highly effective for enhancing LLM reasoning, yet recent evidence shows models like Qwen 2.5 achieve significant gains even with spurious or incorrect rewards. We investigate this phenomenon and identify a "Perplexity Paradox": spurious RLVR triggers a divergence where answer-token perplexity drops while prompt-side coherence degrades, suggesting the model is bypassing reasoning in favor of memorization. Using Path Patching, Logit Lens, JSD analysis, and Neural Differential Equations, we uncover a hidden Anchor-Adapter circuit that facilitates this shortcut. We localize a Functional Anchor in the middle layers (L18-20) that triggers the retrieval of memorized solutions, followed by Structural Adapters in later layers (L21+) that transform representations to accommodate the shortcut signal. Finally, we demonstrate that scaling specific MLP keys within this circuit allows for bidirectional causal steering-artificially amplifying or suppressing contamination-driven performance. Our results provide a mechanistic roadmap for identifying and mitigating data contamination in RLVR-tuned models. Code is available at https://github.com/idwts/How-RLVR-Activates-Memorization-Shortcuts.
CLJul 31, 2024
Adaptive Retrieval-Augmented Generation for Conversational SystemsXi Wang, Procheta Sen, Ruizhe Li et al.
Despite the success of integrating large language models into the development of conversational systems, many studies have shown the effectiveness of retrieving and augmenting external knowledge for informative responses. Hence, many existing studies commonly assume the always need for Retrieval Augmented Generation (RAG) in a conversational system without explicit control. This raises a research question about such a necessity. In this study, we propose to investigate the need for each turn of system response to be augmented with external knowledge. In particular, by leveraging human judgements on the binary choice of adaptive augmentation, we develop RAGate, a gating model, which models conversation context and relevant inputs to predict if a conversational system requires RAG for improved responses. We conduct extensive experiments on devising and applying RAGate to conversational models and well-rounded analyses of different conversational scenarios. Our experimental results and analysis indicate the effective application of RAGate in RAG-based conversational systems in identifying system responses for appropriate RAG with high-quality responses and a high generation confidence. This study also identifies the correlation between the generation's confidence level and the relevance of the augmented knowledge.
CLJan 13
DeepResearch Bench II: Diagnosing Deep Research Agents via Rubrics from Expert ReportRuizhe Li, Mingxuan Du, Benfeng Xu et al.
Deep Research Systems (DRS) aim to help users search the web, synthesize information, and deliver comprehensive investigative reports. However, how to rigorously evaluate these systems remains under-explored. Existing deep-research benchmarks often fall into two failure modes. Some do not adequately test a system's ability to analyze evidence and write coherent reports. Others rely on evaluation criteria that are either overly coarse or directly defined by LLMs (or both), leading to scores that can be biased relative to human experts and are hard to verify or interpret. To address these issues, we introduce Deep Research Bench II, a new benchmark for evaluating DRS-generated reports. It contains 132 grounded research tasks across 22 domains; for each task, a system must produce a long-form research report that is evaluated by a set of 9430 fine-grained binary rubrics in total, covering three dimensions: information recall, analysis, and presentation. All rubrics are derived from carefully selected expert-written investigative articles and are constructed through a four-stage LLM+human pipeline that combines automatic extraction with over 400 human-hours of expert review, ensuring that the criteria are atomic, verifiable, and aligned with human expert judgment. We evaluate several state-of-the-art deep-research systems on Deep Research Bench II and find that even the strongest models satisfy fewer than 50% of the rubrics, revealing a substantial gap between current DRSs and human experts.
IVDec 19, 2025
Breast Cancer Neoadjuvant Chemotherapy Treatment Response Prediction Using Aligned Longitudinal MRI and Clinical DataRahul Ravi, Ruizhe Li, Tarek Abdelfatah et al.
Aim: This study investigates treatment response prediction to neoadjuvant chemotherapy (NACT) in breast cancer patients, using longitudinal contrast-enhanced magnetic resonance images (CE-MRI) and clinical data. The goal is to develop machine learning (ML) models to predict pathologic complete response (PCR binary classification) and 5-year relapse-free survival status (RFS binary classification). Method: The proposed framework includes tumour segmentation, image registration, feature extraction, and predictive modelling. Using the image registration method, MRI image features can be extracted and compared from the original tumour site at different time points, therefore monitoring the intratumor changes during NACT process. Four feature extractors, including one radiomics and three deep learning-based (MedicalNet, Segformer3D, SAM-Med3D) were implemented and compared. In combination with three feature selection methods and four ML models, predictive models are built and compared. Results: The proposed image registration-based feature extraction consistently improves the predictive models. In the PCR and RFS classification tasks logistic regression model trained on radiomic features performed the best with an AUC of 0.88 and classification accuracy of 0.85 for PCR classification, and AUC of 0.78 and classification accuracy of 0.72 for RFS classification. Conclusions: It is evidenced that the image registration method has significantly improved performance in longitudinal feature learning in predicting PCR and RFS. The radiomics feature extractor is more effective than the pre-trained deep learning feature extractors, with higher performance and better interpretability.
98.2CRMay 17
Trust No Tool: Evaluating and Defending LLM Agents under Untrusted Tool FeedbackLecheng Yan, Ruizhe Li, Xicheng Han et al.
Tool-using LLM agents increasingly rely on external tools to make consequential decisions, yet most existing agent-security benchmarks and defenses implicitly assume that tool feedback is trustworthy once a tool has been selected. We study a different failure mode, cognitive poisoning, in which a malicious tool behaves plausibly during exploration, accumulates trust through benign-looking feedback, and becomes harmful only when hidden state conditions align with the final executable action. To study this setting, we construct TRUST-Bench, a task-conditioned benchmark of 1,970 hidden-trigger tool-compromise episodes with matched safe controls, introduce an asymmetric penalty metric, GuardedJoint, to better reflect real deployment risk, and present VISTA-Guard, a backbone-agnostic framework for final-action risk scoring. The core idea is to abstract multi-step tool interaction into structured environment variables that encode trust-formation dynamics and then score the risk of the final executable action from this trajectory-conditioned representation. Experiments show that prompt-centric heuristics, scalarized features, and zero-shot judges fail in this regime, whereas trajectory-aware final-action scoring yields strong in-domain discrimination and remains effective under balanced out-of-distribution transfer. Under GuardedJoint, VISTA-Guard reaches $84.2$ in-domain and $56.9$ on balanced out-of-distribution evaluation, while methods that optimize only one side of the safety--utility tradeoff collapse to zero. These findings support a broader view of agent security in black-box tool ecosystems: the decisive defense target is not local prompt text or tool descriptors alone, but the way trust is formed across the interaction trajectory and committed through the final action.
AIFeb 5
ProMoral-Bench: Evaluating Prompting Strategies for Moral Reasoning and Safety in LLMsRohan Subramanian Thomas, Shikhar Shiromani, Abdullah Chaudhry et al.
Prompt design significantly impacts the moral competence and safety alignment of large language models (LLMs), yet empirical comparisons remain fragmented across datasets and models.We introduce ProMoral-Bench, a unified benchmark evaluating 11 prompting paradigms across four LLM families. Using ETHICS, Scruples, WildJailbreak, and our new robustness test, ETHICS-Contrast, we measure performance via our proposed Unified Moral Safety Score (UMSS), a metric balancing accuracy and safety. Our results show that compact, exemplar-guided scaffolds outperform complex multi-stage reasoning, providing higher UMSS scores and greater robustness at a lower token cost. While multi-turn reasoning proves fragile under perturbations, few-shot exemplars consistently enhance moral stability and jailbreak resistance. ProMoral-Bench establishes a standardized framework for principled, cost-effective prompt engineering.
AIJan 22
Benchmarking Text-to-Python against Text-to-SQL: The Impact of Explicit Logic and AmbiguityHangle Hu, Chenyu Hou, Bin Cao et al.
While Text-to-SQL remains the dominant approach for database interaction, real-world analytics increasingly require the flexibility of general-purpose programming languages such as Python or Pandas to manage file-based data and complex analytical workflows. Despite this growing need, the reliability of Text-to-Python in core data retrieval remains underexplored relative to the mature SQL ecosystem. To address this gap, we introduce BIRD-Python, a benchmark designed for cross-paradigm evaluation. We systematically refined the original dataset to reduce annotation noise and align execution semantics, thereby establishing a consistent and standardized baseline for comparison. Our analysis reveals a fundamental paradigmatic divergence: whereas SQL leverages implicit DBMS behaviors through its declarative structure, Python requires explicit procedural logic, making it highly sensitive to underspecified user intent. To mitigate this challenge, we propose the Logic Completion Framework (LCF), which resolves ambiguity by incorporating latent domain knowledge into the generation process. Experimental results show that (1) performance differences primarily stem from missing domain context rather than inherent limitations in code generation, and (2) when these gaps are addressed, Text-to-Python achieves performance parity with Text-to-SQL. These findings establish Python as a viable foundation for analytical agents-provided that systems effectively ground ambiguous natural language inputs in executable logical specifications. Resources are available at https://anonymous.4open.science/r/Bird-Python-43B7/.
CLJul 16, 2025Code
Marco-Bench-MIF: On Multilingual Instruction-Following Capability of Large Language ModelsBo Zeng, Chenyang Lyu, Sinuo Liu et al.
Instruction-following capability has become a major ability to be evaluated for Large Language Models (LLMs). However, existing datasets, such as IFEval, are either predominantly monolingual and centered on English or simply machine translated to other languages, limiting their applicability in multilingual contexts. In this paper, we present an carefully-curated extension of IFEval to a localized multilingual version named Marco-Bench-MIF, covering 30 languages with varying levels of localization. Our benchmark addresses linguistic constraints (e.g., modifying capitalization requirements for Chinese) and cultural references (e.g., substituting region-specific company names in prompts) via a hybrid pipeline combining translation with verification. Through comprehensive evaluation of 20+ LLMs on our Marco-Bench-MIF, we found that: (1) 25-35% accuracy gap between high/low-resource languages, (2) model scales largely impact performance by 45-60% yet persists script-specific challenges, and (3) machine-translated data underestimates accuracy by7-22% versus localized data. Our analysis identifies challenges in multilingual instruction following, including keyword consistency preservation and compositional constraint adherence across languages. Our Marco-Bench-MIF is available at https://github.com/AIDC-AI/Marco-Bench-MIF.
IVMay 16, 2024Code
MrRegNet: Multi-resolution Mask Guided Convolutional Neural Network for Medical Image Registration with Large DeformationsRuizhe Li, Grazziela Figueredo, Dorothee Auer et al.
Deformable image registration (alignment) is highly sought after in numerous clinical applications, such as computer aided diagnosis and disease progression analysis. Deep Convolutional Neural Network (DCNN)-based image registration methods have demonstrated advantages in terms of registration accuracy and computational speed. However, while most methods excel at global alignment, they often perform worse in aligning local regions. To address this challenge, this paper proposes a mask-guided encoder-decoder DCNN-based image registration method, named as MrRegNet. This approach employs a multi-resolution encoder for feature extraction and subsequently estimates multi-resolution displacement fields in the decoder to handle the substantial deformation of images. Furthermore, segmentation masks are employed to direct the model's attention toward aligning local regions. The results show that the proposed method outperforms traditional methods like Demons and a well-known deep learning method, VoxelMorph, on a public 3D brain MRI dataset (OASIS) and a local 2D brain MRI dataset with large deformations. Importantly, the image alignment accuracies are significantly improved at local regions guided by segmentation masks. Github link:https://github.com/ruizhe-l/MrRegNet.
CLJan 23
Standardizing Longitudinal Radiology Report Evaluation via Large Language Model AnnotationXinyi Wang, Grazziela Figueredo, Ruizhe Li et al.
Longitudinal information in radiology reports refers to the sequential tracking of findings across multiple examinations over time, which is crucial for monitoring disease progression and guiding clinical decisions. Many recent automated radiology report generation methods are designed to capture longitudinal information; however, validating their performance is challenging. There is no proper tool to consistently label temporal changes in both ground-truth and model-generated texts for meaningful comparisons. Existing annotation methods are typically labor-intensive, relying on the use of manual lexicons and rules. Complex rules are closed-source, domain specific and hard to adapt, whereas overly simple ones tend to miss essential specialised information. Large language models (LLMs) offer a promising annotation alternative, as they are capable of capturing nuanced linguistic patterns and semantic similarities without extensive manual intervention. They also adapt well to new contexts. In this study, we therefore propose an LLM-based pipeline to automatically annotate longitudinal information in radiology reports. The pipeline first identifies sentences containing relevant information and then extracts the progression of diseases. We evaluate and compare five mainstream LLMs on these two tasks using 500 manually annotated reports. Considering both efficiency and performance, Qwen2.5-32B was subsequently selected and used to annotate another 95,169 reports from the public MIMIC-CXR dataset. Our Qwen2.5-32B-annotated dataset provided us with a standardized benchmark for evaluating report generation models. Using this new benchmark, we assessed seven state-of-the-art report generation models. Our LLM-based annotation method outperforms existing annotation solutions, achieving 11.3\% and 5.3\% higher F1-scores for longitudinal information detection and disease tracking, respectively.
CLJan 19Code
Race, Ethnicity and Their Implication on Bias in Large Language ModelsShiyue Hu, Ruizhe Li, Yanjun Gao
Large language models (LLMs) increasingly operate in high-stakes settings including healthcare and medicine, where demographic attributes such as race and ethnicity may be explicitly stated or implicitly inferred from text. However, existing studies primarily document outcome-level disparities, offering limited insight into internal mechanisms underlying these effects. We present a mechanistic study of how race and ethnicity are represented and operationalized within LLMs. Using two publicly available datasets spanning toxicity-related generation and clinical narrative understanding tasks, we analyze three open-source models with a reproducible interpretability pipeline combining probing, neuron-level attribution, and targeted intervention. We find that demographic information is distributed across internal units with substantial cross-model variation. Although some units encode sensitive or stereotype-related associations from pretraining, identical demographic cues can induce qualitatively different behaviors. Interventions suppressing such neurons reduce bias but leave substantial residual effects, suggesting behavioral rather than representational change and motivating more systematic mitigation.
SDSep 10, 2025Code
Behind the Scenes: Mechanistic Interpretability of LoRA-adapted Whisper for Speech Emotion RecognitionYujian Ma, Jinqiu Sang, Ruizhe Li
Large pre-trained speech models such as Whisper offer strong generalization but pose significant challenges for resource-efficient adaptation. Low-Rank Adaptation (LoRA) has become a popular parameter-efficient fine-tuning method, yet its underlying mechanisms in speech tasks remain poorly understood. In this work, we conduct the first systematic mechanistic interpretability study of LoRA within the Whisper encoder for speech emotion recognition (SER). Using a suite of analytical tools, including layer contribution probing, logit-lens inspection, and representational similarity via singular value decomposition (SVD) and centered kernel alignment (CKA), we reveal two key mechanisms: a delayed specialization process that preserves general features in early layers before consolidating task-specific information, and a forward alignment, backward differentiation dynamic between LoRA's matrices. Our findings clarify how LoRA reshapes encoder hierarchies, providing both empirical insights and a deeper mechanistic understanding for designing efficient and interpretable adaptation strategies in large speech models. Our code is available at https://github.com/harryporry77/Behind-the-Scenes.
LGJul 23, 2025Code
Helix 1.0: An Open-Source Framework for Reproducible and Interpretable Machine Learning on Tabular Scientific DataEduardo Aguilar-Bejarano, Daniel Lea, Karthikeyan Sivakumar et al.
Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics provenance, ensuring that the entire analytical process -- including decisions around data transformation and methodological choices -- is documented, accessible, reproducible, and comprehensible to relevant stakeholders. The platform comprises modules for standardised data preprocessing, visualisation, machine learning model training, evaluation, interpretation, results inspection, and model prediction for unseen data. To further empower researchers without formal training in data science to derive meaningful and actionable insights, Helix features a user-friendly interface that enables the design of computational experiments, inspection of outcomes, including a novel interpretation approach to machine learning decisions using linguistic terms all within an integrated environment. Released under the MIT licence, Helix is accessible via GitHub and PyPI, supporting community-driven development and promoting adherence to the FAIR principles.
CLMay 22, 2025Code
Attributing Response to Context: A Jensen-Shannon Divergence Driven Mechanistic Study of Context Attribution in Retrieval-Augmented GenerationRuizhe Li, Chen Chen, Yuchen Hu et al.
Retrieval-Augmented Generation (RAG) leverages large language models (LLMs) combined with external contexts to enhance the accuracy and reliability of generated responses. However, reliably attributing generated content to specific context segments, context attribution, remains challenging due to the computationally intensive nature of current methods, which often require extensive fine-tuning or human annotation. In this work, we introduce a novel Jensen-Shannon Divergence driven method to Attribute Response to Context (ARC-JSD), enabling efficient and accurate identification of essential context sentences without additional fine-tuning, gradient-calculation or surrogate modelling. Evaluations on a wide range of RAG benchmarks, such as TyDi QA, Hotpot QA, and Musique, using instruction-tuned LLMs in different scales demonstrate superior accuracy and significant computational efficiency improvements compared to the previous surrogate-based method. Furthermore, our mechanistic analysis reveals specific attention heads and multilayer perceptron (MLP) layers responsible for context attribution, providing valuable insights into the internal workings of RAG models and how they affect RAG behaviours. Our code is available at https://github.com/ruizheliUOA/ARC_JSD.
CLFeb 18, 2025Code
"I know myself better, but not really greatly": How Well Can LLMs Detect and Explain LLM-Generated Texts?Jiazhou Ji, Jie Guo, Weidong Qiu et al.
Distinguishing between human- and LLM-generated texts is crucial given the risks associated with misuse of LLMs. This paper investigates detection and explanation capabilities of current LLMs across two settings: binary (human vs. LLM-generated) and ternary classification (including an ``undecided'' class). We evaluate 6 close- and open-source LLMs of varying sizes and find that self-detection (LLMs identifying their own outputs) consistently outperforms cross-detection (identifying outputs from other LLMs), though both remain suboptimal. Introducing a ternary classification framework improves both detection accuracy and explanation quality across all models. Through comprehensive quantitative and qualitative analyses using our human-annotated dataset, we identify key explanation failures, primarily reliance on inaccurate features, hallucinations, and flawed reasoning. Our findings underscore the limitations of current LLMs in self-detection and self-explanation, highlighting the need for further research to address overfitting and enhance generalizability.
CVFeb 5, 2025Code
A Unified Framework for Semi-Supervised Image Segmentation and RegistrationRuizhe Li, Grazziela Figueredo, Dorothee Auer et al.
Semi-supervised learning, which leverages both annotated and unannotated data, is an efficient approach for medical image segmentation, where obtaining annotations for the whole dataset is time-consuming and costly. Traditional semi-supervised methods primarily focus on extracting features and learning data distributions from unannotated data to enhance model training. In this paper, we introduce a novel approach incorporating an image registration model to generate pseudo-labels for the unannotated data, producing more geometrically correct pseudo-labels to improve the model training. Our method was evaluated on a 2D brain data set, showing excellent performance even using only 1\% of the annotated data. The results show that our approach outperforms conventional semi-supervised segmentation methods (e.g. teacher-student model), particularly in a low percentage of annotation scenario. GitHub: https://github.com/ruizhe-l/UniSegReg.
CLMay 6, 2024Code
Anchored Answers: Unravelling Positional Bias in GPT-2's Multiple-Choice QuestionsRuizhe Li, Yanjun Gao
Large Language Models (LLMs), such as the GPT-4 and LLaMA families, have demonstrated considerable success across diverse tasks, including multiple-choice questions (MCQs). However, these models exhibit a positional bias, particularly an even worse anchored bias in the GPT-2 family, where they consistently favour the first choice 'A' in MCQs during inference. This anchored bias challenges the integrity of GPT-2's decision-making process, as it skews performance based on the position rather than the content of the choices in MCQs. In this study, we utilise the mechanistic interpretability approach to identify the internal modules within GPT-2 models responsible for this bias. We focus on the Multi-Layer Perceptron (MLP) layers and attention heads, using the "logit lens" method to trace and modify the specific value vectors that contribute to the bias. By updating these vectors within MLP and recalibrating attention patterns to neutralise the preference for the first choice 'A', we effectively mitigate the anchored bias. Our interventions not only mitigate the bias but also improve the overall MCQ prediction accuracy for the GPT-2 family across various datasets. This work represents the first comprehensive mechanistic analysis of anchored bias from the failing cases in MCQs within the GPT-2 models, introducing targeted, minimal-intervention strategies that significantly enhance GPT2 model robustness and accuracy in MCQs. Our code is available at https://github.com/ruizheliUOA/Anchored_Bias_GPT2.
IVAug 3, 2021Code
Image Augmentation Using a Task Guided Generative Adversarial Network for Age Estimation on Brain MRIRuizhe Li, Matteo Bastiani, Dorothee Auer et al.
Brain age estimation based on magnetic resonance imaging (MRI) is an active research area in early diagnosis of some neurodegenerative diseases (e.g. Alzheimer, Parkinson, Huntington, etc.) for elderly people or brain underdevelopment for the young group. Deep learning methods have achieved the state-of-the-art performance in many medical image analysis tasks, including brain age estimation. However, the performance and generalisability of the deep learning model are highly dependent on the quantity and quality of the training data set. Both collecting and annotating brain MRI data are extremely time-consuming. In this paper, to overcome the data scarcity problem, we propose a generative adversarial network (GAN) based image synthesis method. Different from the existing GAN-based methods, we integrate a task-guided branch (a regression model for age estimation) to the end of the generator in GAN. By adding a task-guided loss to the conventional GAN loss, the learned low-dimensional latent space and the synthesised images are more task-specific. It helps to boost the performance of the down-stream task by combining the synthesised images and real images for model training. The proposed method was evaluated on a public brain MRI data set for age estimation. Our proposed method outperformed (statistically significant) a deep convolutional neural network based regression model and the GAN-based image synthesis method without the task-guided branch. More importantly, it enables the identification of age-related brain regions in the image space. The code is available on GitHub (https://github.com/ruizhe-l/tgb-gan).
IVApr 28, 2020Code
FU-net: Multi-class Image Segmentation Using Feedback Weighted U-netMina Jafari, Ruizhe Li, Yue Xing et al.
In this paper, we present a generic deep convolutional neural network (DCNN) for multi-class image segmentation. It is based on a well-established supervised end-to-end DCNN model, known as U-net. U-net is firstly modified by adding widely used batch normalization and residual block (named as BRU-net) to improve the efficiency of model training. Based on BRU-net, we further introduce a dynamically weighted cross-entropy loss function. The weighting scheme is calculated based on the pixel-wise prediction accuracy during the training process. Assigning higher weights to pixels with lower segmentation accuracies enables the network to learn more from poorly predicted image regions. Our method is named as feedback weighted U-net (FU-net). We have evaluated our method based on T1- weighted brain MRI for the segmentation of midbrain and substantia nigra, where the number of pixels in each class is extremely unbalanced to each other. Based on the dice coefficient measurement, our proposed FU-net has outperformed BRU-net and U-net with statistical significance, especially when only a small number of training examples are available. The code is publicly available in GitHub (GitHub link: https://github.com/MinaJf/FU-net).
80.3IVApr 10
Search-MIND: Training-Free Multi-Modal Medical Image RegistrationBoya Wang, Ruizhe Li, Chao Chen et al.
Multi-modal image registration plays a critical role in precision medicine but faces challenges from non-linear intensity relationships and local optima. While deep learning models enable rapid inference, they often suffer from generalization collapse on unseen modalities. To address this, we propose Search-MIND, a training-free, iterative optimization framework for instance-specific registration. Our pipeline utilizes a coarse-to-fine strategy: a hierarchical coarse alignment stage followed by deformable refinement. We introduce two novel loss functions: Variance-Weighted Mutual Information (VWMI), which prioritizes informative tissue regions to shield global alignment from background noise and uniform regions, and Search-MIND (S-MIND), which broadens the convergence basin of structural descriptors by considering larger local search range. Evaluations on CARE Liver 2025 and CHAOS Challenge datasets show that Search-MIND consistently outperforms classical baselines like ANTs and foundation model-based approaches like DINO-reg, offering superior stability across diverse modalities.
CLFeb 2
Orthogonal Hierarchical Decomposition for Structure-Aware Table Understanding with Large Language ModelsBin Cao, Huixian Lu, Chenwen Ma et al.
Complex tables with multi-level headers, merged cells and heterogeneous layouts pose persistent challenges for LLMs in both understanding and reasoning. Existing approaches typically rely on table linearization or normalized grid modeling. However, these representations struggle to explicitly capture hierarchical structures and cross-dimensional dependencies, which can lead to misalignment between structural semantics and textual representations for non-standard tables. To address this issue, we propose an Orthogonal Hierarchical Decomposition (OHD) framework that constructs structure-preserving input representations of complex tables for LLMs. OHD introduces an Orthogonal Tree Induction (OTI) method based on spatial--semantic co-constraints, which decomposes irregular tables into a column tree and a row tree to capture vertical and horizontal hierarchical dependencies, respectively. Building on this representation, we design a dual-pathway association protocol to symmetrically reconstruct semantic lineage of each cell, and incorporate an LLM as a semantic arbitrator to align multi-level semantic information. We evaluate OHD framework on two complex table question answering benchmarks, AITQA and HiTab. Experimental results show that OHD consistently outperforms existing representation paradigms across multiple evaluation metrics.
CLFeb 8, 2024
It's Never Too Late: Fusing Acoustic Information into Large Language Models for Automatic Speech RecognitionChen Chen, Ruizhe Li, Yuchen Hu et al. · gatech
Recent studies have successfully shown that large language models (LLMs) can be successfully used for generative error correction (GER) on top of the automatic speech recognition (ASR) output. Specifically, an LLM is utilized to carry out a direct mapping from the N-best hypotheses list generated by an ASR system to the predicted output transcription. However, despite its effectiveness, GER introduces extra data uncertainty since the LLM is trained without taking into account acoustic information available in the speech signal. In this work, we aim to overcome such a limitation by infusing acoustic information before generating the predicted transcription through a novel late fusion solution termed Uncertainty-Aware Dynamic Fusion (UADF). UADF is a multimodal fusion approach implemented into an auto-regressive decoding process and works in two stages: (i) It first analyzes and calibrates the token-level LLM decision, and (ii) it then dynamically assimilates the information from the acoustic modality. Experimental evidence collected from various ASR tasks shows that UADF surpasses existing fusion mechanisms in several ways. It yields significant improvements in word error rate (WER) while mitigating data uncertainty issues in LLM and addressing the poor generalization relied with sole modality during fusion. We also demonstrate that UADF seamlessly adapts to audio-visual speech recognition.
CLFeb 10, 2024
GenTranslate: Large Language Models are Generative Multilingual Speech and Machine TranslatorsYuchen Hu, Chen Chen, Chao-Han Huck Yang et al.
Recent advances in large language models (LLMs) have stepped forward the development of multilingual speech and machine translation by its reduced representation errors and incorporated external knowledge. However, both translation tasks typically utilize beam search decoding and top-1 hypothesis selection for inference. These techniques struggle to fully exploit the rich information in the diverse N-best hypotheses, making them less optimal for translation tasks that require a single, high-quality output sequence. In this paper, we propose a new generative paradigm for translation tasks, namely "GenTranslate", which builds upon LLMs to generate better results from the diverse translation versions in N-best list. Leveraging the rich linguistic knowledge and strong reasoning abilities of LLMs, our new paradigm can integrate the rich information in N-best candidates to generate a higher-quality translation result. Furthermore, to support LLM finetuning, we build and release a HypoTranslate dataset that contains over 592K hypotheses-translation pairs in 11 languages. Experiments on various speech and machine translation benchmarks (e.g., FLEURS, CoVoST-2, WMT) demonstrate that our GenTranslate significantly outperforms the state-of-the-art model.
CLMay 16, 2024
Listen Again and Choose the Right Answer: A New Paradigm for Automatic Speech Recognition with Large Language ModelsYuchen Hu, Chen Chen, Chengwei Qin et al.
Recent advances in large language models (LLMs) have promoted generative error correction (GER) for automatic speech recognition (ASR), which aims to predict the ground-truth transcription from the decoded N-best hypotheses. Thanks to the strong language generation ability of LLMs and rich information in the N-best list, GER shows great effectiveness in enhancing ASR results. However, it still suffers from two limitations: 1) LLMs are unaware of the source speech during GER, which may lead to results that are grammatically correct but violate the source speech content, 2) N-best hypotheses usually only vary in a few tokens, making it redundant to send all of them for GER, which could confuse LLM about which tokens to focus on and thus lead to increased miscorrection. In this paper, we propose ClozeGER, a new paradigm for ASR generative error correction. First, we introduce a multimodal LLM (i.e., SpeechGPT) to receive source speech as extra input to improve the fidelity of correction output. Then, we reformat GER as a cloze test with logits calibration to remove the input information redundancy and simplify GER with clear instructions. Experiments show that ClozeGER achieves a new breakthrough over vanilla GER on 9 popular ASR datasets.
CLApr 22, 2025
Automated Creativity Evaluation for Large Language Models: A Reference-Based ApproachRuizhe Li, Chiwei Zhu, Benfeng Xu et al.
Creative writing is a key capability of Large Language Models (LLMs), with potential applications in literature, storytelling, and various creative domains. However, evaluating the creativity of machine-generated texts remains a significant challenge, as existing methods either rely on costly manual annotations or fail to align closely with human assessments. In this paper, we propose an effective automated evaluation method based on the Torrance Test of Creative Writing (TTCW), which evaluates creativity as product. Our method employs a reference-based Likert-style approach, scoring generated creative texts relative to high-quality reference texts across various tests. Experimental results demonstrate that our method significantly improves the alignment between LLM evaluations and human assessments, achieving a pairwise accuracy of 0.75 (+15\%).
CRFeb 16
Weight space Detection of Backdoors in LoRA AdaptersDavid Puertolas Merenciano, Ekaterina Vasyagina, Raghav Dixit et al.
LoRA adapters let users fine-tune large language models (LLMs) efficiently. However, LoRA adapters are shared through open repositories like Hugging Face Hub \citep{huggingface_hub_docs}, making them vulnerable to backdoor attacks. Current detection methods require running the model with test input data -- making them impractical for screening thousands of adapters where the trigger for backdoor behavior is unknown. We detect poisoned adapters by analyzing their weight matrices directly, without running the model -- making our method data-agnostic. Our method extracts simple statistics -- how concentrated the singular values are, their entropy, and the distribution shape -- and flags adapters that deviate from normal patterns. We evaluate the method on 500 LoRA adapters -- 400 clean, and 100 poisoned for Llama-3.2-3B on instruction and reasoning datasets: Alpaca, Dolly, GSM8K, ARC-Challenge, SQuADv2, NaturalQuestions, HumanEval, and GLUE dataset. We achieve 97\% detection accuracy with less than 2\% false positives.
CVMay 21, 2024
A Survey of Deep Learning-based Radiology Report Generation Using Multimodal DataXinyi Wang, Grazziela Figueredo, Ruizhe Li et al.
Automatic radiology report generation can alleviate the workload for physicians and minimize regional disparities in medical resources, therefore becoming an important topic in the medical image analysis field. It is a challenging task, as the computational model needs to mimic physicians to obtain information from multi-modal input data (i.e., medical images, clinical information, medical knowledge, etc.), and produce comprehensive and accurate reports. Recently, numerous works have emerged to address this issue using deep-learning-based methods, such as transformers, contrastive learning, and knowledge-base construction. This survey summarizes the key techniques developed in the most recent works and proposes a general workflow for deep-learning-based report generation with five main components, including multi-modality data acquisition, data preparation, feature learning, feature fusion and interaction, and report generation. The state-of-the-art methods for each of these components are highlighted. Additionally, we summarize the latest developments in large model-based methods and model explainability, along with public datasets, evaluation methods, current challenges, and future directions in this field. We have also conducted a quantitative comparison between different methods in the same experimental setting. This is the most up-to-date survey that focuses on multi-modality inputs and data fusion for radiology report generation. The aim is to provide comprehensive and rich information for researchers interested in automatic clinical report generation and medical image analysis, especially when using multimodal inputs, and to assist them in developing new algorithms to advance the field.
LGMay 16, 2024
Overcoming Catastrophic Forgetting by Exemplar Selection in Task-oriented Dialogue SystemChen Chen, Ruizhe Li, Yuchen Hu et al.
Intelligent task-oriented dialogue systems (ToDs) are expected to continuously acquire new knowledge, also known as Continual Learning (CL), which is crucial to fit ever-changing user needs. However, catastrophic forgetting dramatically degrades the model performance in face of a long streamed curriculum. In this paper, we aim to overcome the forgetting problem in ToDs and propose a method (HESIT) with hyper-gradient-based exemplar strategy, which samples influential exemplars for periodic retraining. Instead of unilaterally observing data or models, HESIT adopts a profound exemplar selection strategy that considers the general performance of the trained model when selecting exemplars for each task domain. Specifically, HESIT analyzes the training data influence by tracing their hyper-gradient in the optimization process. Furthermore, HESIT avoids estimating Hessian to make it compatible for ToDs with a large pre-trained model. Experimental results show that HESIT effectively alleviates catastrophic forgetting by exemplar selection, and achieves state-of-the-art performance on the largest CL benchmark of ToDs in terms of all metrics.
CROct 28, 2024
FreqMark: Invisible Image Watermarking via Frequency Based Optimization in Latent SpaceYiyang Guo, Ruizhe Li, Mude Hui et al.
Invisible watermarking is essential for safeguarding digital content, enabling copyright protection and content authentication. However, existing watermarking methods fall short in robustness against regeneration attacks. In this paper, we propose a novel method called FreqMark that involves unconstrained optimization of the image latent frequency space obtained after VAE encoding. Specifically, FreqMark embeds the watermark by optimizing the latent frequency space of the images and then extracts the watermark through a pre-trained image encoder. This optimization allows a flexible trade-off between image quality with watermark robustness and effectively resists regeneration attacks. Experimental results demonstrate that FreqMark offers significant advantages in image quality and robustness, permits flexible selection of the encoding bit number, and achieves a bit accuracy exceeding 90% when encoding a 48-bit hidden message under various attack scenarios.
AIApr 4, 2025
Towards deployment-centric multimodal AI beyond vision and languageXianyuan Liu, Jiayang Zhang, Shuo Zhou et al.
Multimodal artificial intelligence (AI) integrates diverse types of data via machine learning to improve understanding, prediction, and decision-making across disciplines such as healthcare, science, and engineering. However, most multimodal AI advances focus on models for vision and language data, while their deployability remains a key challenge. We advocate a deployment-centric workflow that incorporates deployment constraints early to reduce the likelihood of undeployable solutions, complementing data-centric and model-centric approaches. We also emphasise deeper integration across multiple levels of multimodality and multidisciplinary collaboration to significantly broaden the research scope beyond vision and language. To facilitate this approach, we identify common multimodal-AI-specific challenges shared across disciplines and examine three real-world use cases: pandemic response, self-driving car design, and climate change adaptation, drawing expertise from healthcare, social science, engineering, science, sustainability, and finance. By fostering multidisciplinary dialogue and open research practices, our community can accelerate deployment-centric development for broad societal impact.
IVJul 25, 2025
Extreme Cardiac MRI Analysis under Respiratory Motion: Results of the CMRxMotion ChallengeKang Wang, Chen Qin, Zhang Shi et al.
Deep learning models have achieved state-of-the-art performance in automated Cardiac Magnetic Resonance (CMR) analysis. However, the efficacy of these models is highly dependent on the availability of high-quality, artifact-free images. In clinical practice, CMR acquisitions are frequently degraded by respiratory motion, yet the robustness of deep learning models against such artifacts remains an underexplored problem. To promote research in this domain, we organized the MICCAI CMRxMotion challenge. We curated and publicly released a dataset of 320 CMR cine series from 40 healthy volunteers who performed specific breathing protocols to induce a controlled spectrum of motion artifacts. The challenge comprised two tasks: 1) automated image quality assessment to classify images based on motion severity, and 2) robust myocardial segmentation in the presence of motion artifacts. A total of 22 algorithms were submitted and evaluated on the two designated tasks. This paper presents a comprehensive overview of the challenge design and dataset, reports the evaluation results for the top-performing methods, and further investigates the impact of motion artifacts on five clinically relevant biomarkers. All resources and code are publicly available at: https://github.com/CMRxMotion
CVDec 22, 2024
FriendsQA: A New Large-Scale Deep Video Understanding Dataset with Fine-grained Topic Categorization for Story VideosZhengqian Wu, Ruizhe Li, Zijun Xu et al.
Video question answering (VideoQA) aims to answer natural language questions according to the given videos. Although existing models perform well in the factoid VideoQA task, they still face challenges in deep video understanding (DVU) task, which focuses on story videos. Compared to factoid videos, the most significant feature of story videos is storylines, which are composed of complex interactions and long-range evolvement of core story topics including characters, actions and locations. Understanding these topics requires models to possess DVU capability. However, existing DVU datasets rarely organize questions according to these story topics, making them difficult to comprehensively assess VideoQA models' DVU capability of complex storylines. Additionally, the question quantity and video length of these dataset are limited by high labor costs of handcrafted dataset building method. In this paper, we devise a large language model based multi-agent collaboration framework, StoryMind, to automatically generate a new large-scale DVU dataset. The dataset, FriendsQA, derived from the renowned sitcom Friends with an average episode length of 1,358 seconds, contains 44.6K questions evenly distributed across 14 fine-grained topics. Finally, We conduct comprehensive experiments on 10 state-of-the-art VideoQA models using the FriendsQA dataset.
46.1IRMar 13
FGTR: Fine-Grained Multi-Table Retrieval via Hierarchical LLM ReasoningChaojie Sun, Bin Cao, Tiantian Li et al.
With the rapid advancement of large language models (LLMs), growing efforts have been made on LLM-based table retrieval. However, existing studies typically focus on single-table query, and implement it by similarity matching after encoding the entire table. These methods usually result in low accuracy due to their coarse-grained encoding which incorporates much query-irrelated data, and are also inefficient when dealing with large tables, failing to fully utilize the reasoning capabilities of LLM. Further, multi-table query is under-explored in retrieval tasks. To this end, we propose a hierarchical multi-table query method based on LLM: Fine-Grained Multi-Table Retrieval FGTR, a new retrieval paradigm that employs a human-like reasoning strategy. Through hierarchical reasoning, FGTR first identifies relevant schema elements and then retrieves the corresponding cell contents, ultimately constructing a concise and accurate sub-table that aligns with the given query. To comprehensively evaluate the performance of FGTR, we construct two new benchmark datasets based on Spider and BIRD . Experimental results show that FGTR outperforms previous state-of-the-art methods, improving the F_2 metric by 18% on Spider and 21% on BIRD, demonstrating its effectiveness in enhancing fine-grained retrieval and its potential to improve end-to-end performance on table-based downstream tasks.
LGMar 3, 2024
Selection, Ensemble, and Adaptation: Advancing Multi-Source-Free Domain Adaptation via Architecture ZooJiangbo Pei, Ruizhe Li, Aidong Men et al.
Conventional Multi-Source Free Domain Adaptation (MSFDA) assumes that each source domain provides a single source model, and all source models adopt a uniform architecture. This paper introduces Zoo-MSFDA, a more general setting that allows each source domain to offer a zoo of multiple source models with different architectures. While it enriches the source knowledge, Zoo-MSFDA risks being dominated by suboptimal/harmful models. To address this issue, we theoretically analyze the model selection problem in Zoo-MSFDA, and introduce two principles: transferability principle and diversity principle. Recognizing the challenge of measuring transferability, we subsequently propose a novel Source-Free Unsupervised Transferability Estimation (SUTE). It enables assessing and comparing transferability across multiple source models with different architectures under domain shift, without requiring target labels and source data. Based on above, we introduce a Selection, Ensemble, and Adaptation (SEA) framework to address Zoo-MSFDA, which consists of: 1) source models selection based on the proposed principles and SUTE; 2) ensemble construction based on SUTE-estimated transferability; 3) target-domain adaptation of the ensemble model. Evaluations demonstrate that our SEA framework, with the introduced Zoo-MSFDA setting, significantly improves adaptation performance (e.g., 13.5% on DomainNet). Additionally, our SUTE achieves state-of-the-art performance in transferability estimation.
CRFeb 21
MANATEE: Inference-Time Lightweight Diffusion Based Safety Defense for LLMsChun Yan Ryan Kan, Tommy Tran, Vedant Yadav et al.
Defending LLMs against adversarial jailbreak attacks remains an open challenge. Existing defenses rely on binary classifiers that fail when adversarial input falls outside the learned decision boundary, and repeated fine-tuning is computationally expensive while potentially degrading model capabilities. We propose MANATEE, an inference-time defense that uses density estimation over a benign representation manifold. MANATEE learns the score function of benign hidden states and uses diffusion to project anomalous representations toward safe regions--requiring no harmful training data and no architectural modifications. Experiments across Mistral-7B-Instruct, Llama-3.1-8B-Instruct, and Gemma-2-9B-it demonstrate that MANATEE reduce Attack Success Rate by up to 100\% on certain datasets, while preserving model utility on benign inputs.
CLMay 24, 2025
Business as Rulesual: A Benchmark and Framework for Business Rule Flow Modeling with LLMsChen Yang, Ruping Xu, Ruizhe Li et al.
Process mining aims to discover, monitor and optimize the actual behaviors of real processes. While prior work has mainly focused on extracting procedural action flows from instructional texts, rule flows embedded in business documents remain underexplored. To this end, we introduce a novel annotated Chinese dataset, BPRF, which contains 50 business process documents with 326 explicitly labeled business rules across multiple domains. Each rule is represented as a <Condition, Action> pair, and we annotate logical dependencies between rules (sequential, conditional, or parallel). We also propose ExIde, a framework for automatic business rule extraction and dependency relationship identification using large language models (LLMs). We evaluate ExIde using 12 state-of-the-art (SOTA) LLMs on the BPRF dataset, benchmarking performance on both rule extraction and dependency classification tasks of current LLMs. Our results demonstrate the effectiveness of ExIde in extracting structured business rules and analyzing their interdependencies for current SOTA LLMs, paving the way for more automated and interpretable business process automation.
CLJun 26, 2024
Detecting Machine-Generated Texts: Not Just "AI vs Humans" and Explainability is ComplicatedJiazhou Ji, Ruizhe Li, Shujun Li et al.
As LLMs rapidly advance, increasing concerns arise regarding risks about actual authorship of texts we see online and in real world. The task of distinguishing LLM-authored texts is complicated by the nuanced and overlapping behaviors of both machines and humans. In this paper, we challenge the current practice of considering LLM-generated text detection a binary classification task of differentiating human from AI. Instead, we introduce a novel ternary text classification scheme, adding an "undecided" category for texts that could be attributed to either source, and we show that this new category is crucial to understand how to make the detection result more explainable to lay users. This research shifts the paradigm from merely classifying to explaining machine-generated texts, emphasizing need for detectors to provide clear and understandable explanations to users. Our study involves creating four new datasets comprised of texts from various LLMs and human authors. Based on new datasets, we performed binary classification tests to ascertain the most effective SOTA detection methods and identified SOTA LLMs capable of producing harder-to-detect texts. We constructed a new dataset of texts generated by two top-performing LLMs and human authors, and asked three human annotators to produce ternary labels with explanation notes. This dataset was used to investigate how three top-performing SOTA detectors behave in new ternary classification context. Our results highlight why "undecided" category is much needed from the viewpoint of explainability. Additionally, we conducted an analysis of explainability of the three best-performing detectors and the explanation notes of the human annotators, revealing insights about the complexity of explainable detection of machine-generated texts. Finally, we propose guidelines for developing future detection systems with improved explanatory power.
CLJun 21, 2024
Error Correction in Radiology Reports: A Knowledge Distillation-Based Multi-Stage FrameworkJinge Wu, Zhaolong Wu, Ruizhe Li et al.
The increasing complexity and workload of clinical radiology leads to inevitable oversights and mistakes in their use as diagnostic tools, causing delayed treatments and sometimes life-threatening harm to patients. While large language models (LLMs) have shown remarkable progress in many tasks, their utilities in detecting and correcting errors in radiology reporting are limited. This paper proposes a novel dual-knowledge infusion framework that enhances LLMs' capability for radiology report proofreading through systematic integration of medical expertise. Specifically, the knowledge infusion combines medical knowledge graph distillation (MKGD) with external knowledge retrieval (EXKR), enabling an effective automated approach in tackling mistakes in radiology reporting. By decomposing the complex proofreading task into three specialized stages of detection, localization, and correction, our method mirrors the systematic review process employed by expert radiologists, ensuring both precision and clinical interpretability. To perform a robust, clinically relevant evaluation, a comprehensive benchmark is also proposed using real-world radiology reports with real-world error patterns, including speech recognition confusions, terminology ambiguities, and template-related inconsistencies. Extensive evaluations across multiple LLM architectures demonstrate substantial improvements of our approach: up to 31.56% increase in error detection accuracy and 37.4% reduction in processing time. Human evaluation by radiologists confirms superior clinical relevance and factual consistency compared to existing approaches.
CLJan 19, 2024
Large Language Models are Efficient Learners of Noise-Robust Speech RecognitionYuchen Hu, Chen Chen, Chao-Han Huck Yang et al.
Recent advances in large language models (LLMs) have promoted generative error correction (GER) for automatic speech recognition (ASR), which leverages the rich linguistic knowledge and powerful reasoning ability of LLMs to improve recognition results. The latest work proposes a GER benchmark with HyPoradise dataset to learn the mapping from ASR N-best hypotheses to ground-truth transcription by efficient LLM finetuning, which shows great effectiveness but lacks specificity on noise-robust ASR. In this work, we extend the benchmark to noisy conditions and investigate if we can teach LLMs to perform denoising for GER just like what robust ASR do}, where one solution is introducing noise information as a conditioner into LLM. However, directly incorporating noise embeddings from audio encoder could harm the LLM tuning due to cross-modality gap. To this end, we propose to extract a language-space noise embedding from the N-best list to represent the noise conditions of source speech, which can promote the denoising process in GER. Furthermore, in order to enhance its representation ability of audio noise, we design a knowledge distillation (KD) approach via mutual information estimation to distill the real noise information in audio embeddings to our language embedding. Experiments on various latest LLMs demonstrate our approach achieves a new breakthrough with up to 53.9% correction improvement in terms of word error rate while with limited training data. Analysis shows that our language-space noise embedding can well represent the noise conditions of source speech, under which off-the-shelf LLMs show strong ability of language-space denoising.