42.1AIMay 23
TIGER: Text-Informed Generalized Enzyme-Reaction RetrievalYuhang Zhang, Keyan Ding, Peilin Chen et al.
Enzyme-reaction retrieval is a fundamental problem in computational biology, underpinning enzyme characterization, reaction mechanism elucidation, and the rational design of metabolic pathways and biocatalysts. As a bidirectional task, it entails both enzyme-to-reaction and reaction-to-enzyme mapping. However, existing approaches suffer from poor generalization across tasks and distributions, with performance highly sensitive to dataset splits and substantial asymmetry between retrieval directions. To address these challenges, we present TIGER, a Text-Informed Generalized Enzyme-Reaction Retrieval framework that leverages protein-to-text generation models to distill textual semantic knowledge from enzyme sequences, providing a generalized representation that bridges enzymes and biochemical reactions. To ensure the quality and reliability of textual semantics, we design a Dynamic Gating Network that adaptively fuses text-derived knowledge with sequence features, enabling more consistent and informative enzyme representations, while a Structure-Shared Feature Projector aligns enzyme and reaction representations within a unified latent space. Extensive experiments demonstrate that, under bidirectional retrieval supervision, TIGER significantly outperforms state-of-the-art baselines across diverse distributions and exhibits strong robustness and transferability across tasks.
CLSep 25, 2025Code
RJE: A Retrieval-Judgment-Exploration Framework for Efficient Knowledge Graph Question Answering with LLMsCan Lin, Zhengwang Jiang, Ling Zheng et al.
Knowledge graph question answering (KGQA) aims to answer natural language questions using knowledge graphs. Recent research leverages large language models (LLMs) to enhance KGQA reasoning, but faces limitations: retrieval-based methods are constrained by the quality of retrieved information, while agent-based methods rely heavily on proprietary LLMs. To address these limitations, we propose Retrieval-Judgment-Exploration (RJE), a framework that retrieves refined reasoning paths, evaluates their sufficiency, and conditionally explores additional evidence. Moreover, RJE introduces specialized auxiliary modules enabling small-sized LLMs to perform effectively: Reasoning Path Ranking, Question Decomposition, and Retriever-assisted Exploration. Experiments show that our approach with proprietary LLMs (such as GPT-4o-mini) outperforms existing baselines while enabling small open-source LLMs (such as 3B and 8B parameters) to achieve competitive results without fine-tuning LLMs. Additionally, RJE substantially reduces the number of LLM calls and token usage compared to agent-based methods, yielding significant efficiency improvements.
CLNov 13, 2025
GraphIF: Enhancing Multi-Turn Instruction Following for Large Language Models with Relation Graph PromptZhenhe Li, Can Lin, Ling Zheng et al.
Multi-turn instruction following is essential for building intelligent conversational systems that can consistently adhere to instructions across dialogue turns. However, existing approaches to enhancing multi-turn instruction following primarily rely on collecting or generating large-scale multi-turn dialogue datasets to fine-tune large language models (LLMs), which treat each response generation as an isolated task and fail to explicitly incorporate multi-turn instruction following into the optimization objectives. As a result, instruction-tuned LLMs often struggle with complex long-distance constraints. In multi-turn dialogues, relational constraints across turns can be naturally modeled as labeled directed edges, making graph structures particularly suitable for modeling multi-turn instruction following. Despite this potential, leveraging graph structures to enhance the multi-turn instruction following capabilities of LLMs remains unexplored. To bridge this gap, we propose GraphIF, a plug-and-play framework that models multi-turn dialogues as directed relation graphs and leverages graph prompts to enhance the instruction following capabilities of LLMs. GraphIF comprises three key components: (1) an agent-based relation extraction module that captures inter-turn semantic relations via action-triggered mechanisms to construct structured graphs; (2) a relation graph prompt generation module that converts structured graph information into natural language prompts; and (3) a response rewriting module that refines initial LLM outputs using the generated graph prompts. Extensive experiments on two long multi-turn dialogue datasets demonstrate that GraphIF can be seamlessly integrated into instruction-tuned LLMs and leads to significant improvements across all four multi-turn instruction-following evaluation metrics.
CVJun 20, 2025
Self-supervised Feature Extraction for Enhanced Ball Detection on Soccer RobotsCan Lin, Daniele Affinita, Marco E. P. Zimmatore et al.
Robust and accurate ball detection is a critical component for autonomous humanoid soccer robots, particularly in dynamic and challenging environments such as RoboCup outdoor fields. However, traditional supervised approaches require extensive manual annotation, which is costly and time-intensive. To overcome this problem, we present a self-supervised learning framework for domain-adaptive feature extraction to enhance ball detection performance. The proposed approach leverages a general-purpose pretrained model to generate pseudo-labels, which are then used in a suite of self-supervised pretext tasks -- including colorization, edge detection, and triplet loss -- to learn robust visual features without relying on manual annotations. Additionally, a model-agnostic meta-learning (MAML) strategy is incorporated to ensure rapid adaptation to new deployment scenarios with minimal supervision. A new dataset comprising 10,000 labeled images from outdoor RoboCup SPL matches is introduced, used to validate the method, and made available to the community. Experimental results demonstrate that the proposed pipeline outperforms baseline models in terms of accuracy, F1 score, and IoU, while also exhibiting faster convergence.