Sewon Kim

Daeseong Kim, Haanju Yoo, Sewon Kim

International Classification of Diseases (ICD) is a global medical classification system which provides unique codes for diagnoses and procedures appropriate to a patient's clinical record. However, manual coding by human coders is expensive and error-prone. Automatic ICD coding has the potential to solve this problem. With the advancement of deep learning technologies, many deep learning-based methods for automatic ICD coding are being developed. In particular, a label attention mechanism is effective for multi-label classification, i.e., the ICD coding. It effectively obtains the label-specific representations from the input clinical records. However, because the existing label attention mechanism finds key tokens in the entire text at once, the important information dispersed in each paragraph may be omitted from the attention map. To overcome this, we propose a novel neural network architecture composed of two parts of encoders and two kinds of label attention layers. The input text is segmentally encoded in the former encoder and integrated by the follower. Then, the conventional and partition-based label attention mechanisms extract important global and local feature representations. Our classifier effectively integrates them to enhance the ICD coding performance. We verified the proposed method using the MIMIC-III, a benchmark dataset of the ICD coding. Our results show that our network improves the ICD coding performance based on the partition-based mechanism.

Hyungseob Shin, Hyeongyu Kim, Sewon Kim et al.

Recent advances in deep learning-based medical image segmentation studies achieve nearly human-level performance in fully supervised manner. However, acquiring pixel-level expert annotations is extremely expensive and laborious in medical imaging fields. Unsupervised domain adaptation (UDA) can alleviate this problem, which makes it possible to use annotated data in one imaging modality to train a network that can successfully perform segmentation on target imaging modality with no labels. In this work, we propose SDC-UDA, a simple yet effective volumetric UDA framework for slice-direction continuous cross-modality medical image segmentation which combines intra- and inter-slice self-attentive image translation, uncertainty-constrained pseudo-label refinement, and volumetric self-training. Our method is distinguished from previous methods on UDA for medical image segmentation in that it can obtain continuous segmentation in the slice direction, thereby ensuring higher accuracy and potential in clinical practice. We validate SDC-UDA with multiple publicly available cross-modality medical image segmentation datasets and achieve state-of-the-art segmentation performance, not to mention the superior slice-direction continuity of prediction compared to previous studies.

Hyungseob Shin, Hyeongyu Kim, Sewon Kim et al.

Recent advances in deep learning-based medical image segmentation studies achieve nearly human-level performance when in fully supervised condition. However, acquiring pixel-level expert annotations is extremely expensive and laborious in medical imaging fields. Unsupervised domain adaptation can alleviate this problem, which makes it possible to use annotated data in one imaging modality to train a network that can successfully perform segmentation on target imaging modality with no labels. In this work, we propose a self-training based unsupervised domain adaptation framework for 3D medical image segmentation named COSMOS and validate it with automatic segmentation of Vestibular Schwannoma (VS) and cochlea on high-resolution T2 Magnetic Resonance Images (MRI). Our target-aware contrast conversion network translates source domain annotated T1 MRI to pseudo T2 MRI to enable segmentation training on target domain, while preserving important anatomical features of interest in the converted images. Iterative self-training is followed to incorporate unlabeled data to training and incrementally improve the quality of pseudo-labels, thereby leading to improved performance of segmentation. COSMOS won the 1\textsuperscript{st} place in the Cross-Modality Domain Adaptation (crossMoDA) challenge held in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). It achieves mean Dice score and Average Symmetric Surface Distance of 0.871(0.063) and 0.437(0.270) for VS, and 0.842(0.020) and 0.152(0.030) for cochlea.