Dennis Prangle

Tennessee Hickling, Dennis Prangle

We propose a transformation capable of altering the tail properties of a distribution, motivated by extreme value theory, which can be used as a layer in a normalizing flow to approximate multivariate heavy tailed distributions. We apply this approach to model financial returns, capturing potentially extreme shocks that arise in such data. The trained models can be used directly to generate new synthetic sets of potentially extreme returns

Sherman Khoo, Dennis Prangle, Song Liu et al.

Simulation-based inference (SBI) enables amortized Bayesian inference by first training a neural posterior estimator (NPE) on prior-simulator pairs, typically through low-dimensional summary statistics, which can then be cheaply reused for fast inference by querying it on new test observations. Because NPE is estimated under the training data distribution, it is susceptible to misspecification when observations deviate from the training distribution. Many robust SBI approaches address this by modifying NPE training or introducing error models, coupling robustness to the inference network and compromising amortization and modularity. We introduce minimum-distance summaries, a plug-in robust NPE method that adapts queried test-time summaries independently of the pretrained NPE. Leveraging the maximum mean discrepancy (MMD) as a distance between observed data and a summary-conditional predictive distribution, the adapted summary inherits strong robustness properties from the MMD. We demonstrate that the algorithm can be implemented efficiently with random Fourier feature approximations, yielding a lightweight, model-free test-time adaptation procedure. We provide theoretical guarantees for the robustness of our algorithm and empirically evaluate it on a range of synthetic and real-world tasks, demonstrating substantial robustness gains with minimal additional overhead.

Tennessee Hickling, Dennis Prangle

Normalizing flows are a flexible class of probability distributions, expressed as transformations of a simple base distribution. A limitation of standard normalizing flows is representing distributions with heavy tails, which arise in applications to both density estimation and variational inference. A popular current solution to this problem is to use a heavy tailed base distribution. We argue this can lead to poor performance due to the difficulty of optimising neural networks, such as normalizing flows, under heavy tailed input. We propose an alternative, "tail transform flow" (TTF), which uses a Gaussian base distribution and a final transformation layer which can produce heavy tails. Experimental results show this approach outperforms current methods, especially when the target distribution has large dimension or tail weight.

Matthew A. Fisher, Tui Nolan, Matthew M. Graham et al.

Measure transport underpins several recent algorithms for posterior approximation in the Bayesian context, wherein a transport map is sought to minimise the Kullback--Leibler divergence (KLD) from the posterior to the approximation. The KLD is a strong mode of convergence, requiring absolute continuity of measures and placing restrictions on which transport maps can be permitted. Here we propose to minimise a kernel Stein discrepancy (KSD) instead, requiring only that the set of transport maps is dense in an $L^2$ sense and demonstrating how this condition can be validated. The consistency of the associated posterior approximation is established and empirical results suggest that KSD is competitive and more flexible alternative to KLD for measure transport.

Rob Geada, Dennis Prangle, Andrew Stephen McGough

One-shot Neural Architecture Search (NAS) aims to minimize the computational expense of discovering state-of-the-art models. However, in the past year attention has been drawn to the comparable performance of naive random search across the same search spaces used by leading NAS algorithms. To address this, we explore the effects of drastically relaxing the NAS search space, and we present Bonsai-Net, an efficient one-shot NAS method to explore our relaxed search space. Bonsai-Net is built around a modified differential pruner and can consistently discover state-of-the-art architectures that are significantly better than random search with fewer parameters than other state-of-the-art methods. Additionally, Bonsai-Net performs simultaneous model search and training, dramatically reducing the total time it takes to generate fully-trained models from scratch.

Dennis Prangle, Cecilia Viscardi

Likelihood-free inference involves inferring parameter values given observed data and a simulator model. The simulator is computer code which takes parameters, performs stochastic calculations, and outputs simulated data. In this work, we view the simulator as a function whose inputs are (1) the parameters and (2) a vector of pseudo-random draws. We attempt to infer all these inputs conditional on the observations. This is challenging as the resulting posterior can be high dimensional and involve strong dependence. We approximate the posterior using normalizing flows, a flexible parametric family of densities. Training data is generated by likelihood-free importance sampling with a large bandwidth value epsilon, which makes the target similar to the prior. The training data is "distilled" by using it to train an updated normalizing flow. The process is iterated, using the updated flow as the importance sampling proposal, and slowly reducing epsilon so the target becomes closer to the posterior. Unlike most other likelihood-free methods, we avoid the need to reduce data to low dimensional summary statistics, and hence can achieve more accurate results. We illustrate our method in two challenging examples, on queuing and epidemiology.

Tom Ryder, Dennis Prangle, Andrew Golightly et al.

Variational inference has had great success in scaling approximate Bayesian inference to big data by exploiting mini-batch training. To date, however, this strategy has been most applicable to models of independent data. We propose an extension to state space models of time series data based on a novel generative model for latent temporal states: the neural moving average model. This permits a subsequence to be sampled without drawing from the entire distribution, enabling training iterations to use mini-batches of the time series at low computational cost. We illustrate our method on autoregressive, Lotka-Volterra, FitzHugh-Nagumo and stochastic volatility models, achieving accurate parameter estimation in a short time.

Wil O. C. Ward, Tom Ryder, Dennis Prangle et al.

Latent force models are systems whereby there is a mechanistic model describing the dynamics of the system state, with some unknown forcing term that is approximated with a Gaussian process. If such dynamics are non-linear, it can be difficult to estimate the posterior state and forcing term jointly, particularly when there are system parameters that also need estimating. This paper uses black-box variational inference to jointly estimate the posterior, designing a multivariate extension to local inverse autoregressive flows as a flexible approximater of the system. We compare estimates on systems where the posterior is known, demonstrating the effectiveness of the approximation, and apply to problems with non-linear dynamics, multi-output systems and models with non-Gaussian likelihoods.

Tom Ryder, Andrew Golighty, A. Stephen McGough et al.

State-space models (SSMs) provide a flexible framework for modelling time-series data. Consequently, SSMs are ubiquitously applied in areas such as engineering, econometrics and epidemiology. In this paper we provide a fast approach for approximate Bayesian inference in SSMs using the tools of deep learning and variational inference.

Thomas Ryder, Andrew Golightly, A. Stephen McGough et al.

Parameter inference for stochastic differential equations is challenging due to the presence of a latent diffusion process. Working with an Euler-Maruyama discretisation for the diffusion, we use variational inference to jointly learn the parameters and the diffusion paths. We use a standard mean-field variational approximation of the parameter posterior, and introduce a recurrent neural network to approximate the posterior for the diffusion paths conditional on the parameters. This neural network learns how to provide Gaussian state transitions which bridge between observations in a very similar way to the conditioned diffusion process. The resulting black-box inference method can be applied to any SDE system with light tuning requirements. We illustrate the method on a Lotka-Volterra system and an epidemic model, producing accurate parameter estimates in a few hours.

Richard G. Everitt, Dennis Prangle, Philip Maybank et al.

Bayesian inference for models that have an intractable partition function is known as a doubly intractable problem, where standard Monte Carlo methods are not applicable. The past decade has seen the development of auxiliary variable Monte Carlo techniques (Møller et al., 2006; Murray et al., 2006) for tackling this problem; these approaches being members of the more general class of pseudo-marginal, or exact-approximate, Monte Carlo algorithms (Andrieu and Roberts, 2009), which make use of unbiased estimates of intractable posteriors. Everitt et al. (2017) investigated the use of exact-approximate importance sampling (IS) and sequential Monte Carlo (SMC) in doubly intractable problems, but focussed only on SMC algorithms that used data-point tempering. This paper describes SMC samplers that may use alternative sequences of distributions, and describes ways in which likelihood estimates may be improved adaptively as the algorithm progresses, building on ideas from Moores et al. (2015). This approach is compared with a number of alternative algorithms for doubly intractable problems, including approximate Bayesian computation (ABC), which we show is closely related to the method of Møller et al. (2006).

Dennis Prangle, Richard G. Everitt

We show that the auxiliary variable method (Møller et al., 2006; Murray et al., 2006) for inference of Markov random fields can be viewed as an approximate Bayesian computation method for likelihood estimation.

Dennis Prangle

ABC algorithms involve a large number of simulations from the model of interest, which can be very computationally costly. This paper summarises the lazy ABC algorithm of Prangle (2015), which reduces the computational demand by abandoning many unpromising simulations before completion. By using a random stopping decision and reweighting the output sample appropriately, the target distribution is the same as for standard ABC. Lazy ABC is also extended here to the case of non-uniform ABC kernels, which is shown to simplify the process of tuning the algorithm effectively.