Hanung Adi Nugroho

Hanung Adi Nugroho, Rizki Nurfauzi, E. Elsa Herdiana Murhandarwati et al.

Indonesia holds the second-highest-ranking country for the highest number of malaria cases in Southeast Asia. A different malaria parasite semantic segmentation technique based on a deep learning approach is an alternative to reduce the limitations of traditional methods. However, the main problem of the semantic segmentation technique is raised since large parasites are dominant, and the tiny parasites are suppressed. In addition, the amount and variance of data are important influences in establishing their models. In this study, we conduct two contributions. First, we collect 559 microscopic images containing 691 malaria parasites of thin blood smears. The dataset is named PlasmoID, and most data comes from rural Indonesia. PlasmoID also provides ground truth for parasite detection and segmentation purposes. Second, this study proposes a malaria parasite segmentation and detection scheme by combining Faster RCNN and a semantic segmentation technique. The proposed scheme has been evaluated on the PlasmoID dataset. It has been compared with recent studies of semantic segmentation techniques, namely UNet, ResFCN-18, DeepLabV3, DeepLabV3plus and ResUNet-18. The result shows that our proposed scheme can improve the segmentation and detection of malaria parasite performance compared to original semantic segmentation techniques.

Pandega Abyan Zumarsyah, Igi Ardiyanto, Hanung Adi Nugroho

This study develops meta-learners for few-shot weakly-supervised segmentation (FWS) to address the challenge of optic disc (OD) and optic cup (OC) segmentation for glaucoma diagnosis with limited labeled fundus images. We significantly improve existing meta-learners by introducing Omni meta-training which balances data usage and diversifies the number of shots. We also develop their efficient versions that reduce computational costs. In addition, we develop sparsification techniques that generate more customizable and representative scribbles and other sparse labels. After evaluating multiple datasets, we find that Omni and efficient versions outperform the original versions, with the best meta-learner being Efficient Omni ProtoSeg (EO-ProtoSeg). It achieves intersection over union (IoU) scores of 88.15% for OD and 71.17% for OC on the REFUGE dataset using just one sparsely labeled image, outperforming few-shot and semi-supervised methods which require more labeled images. Its best performance reaches 86.80% for OD and 71.78%for OC on DRISHTIGS, 88.21% for OD and 73.70% for OC on REFUGE, 80.39% for OD and 52.65% for OC on REFUGE. EO-ProtoSeg is comparable to unsupervised domain adaptation methods yet much lighter with less than two million parameters and does not require any retraining.