Yi Xiong

CV
h-index14
26papers
333citations
Novelty56%
AI Score56

26 Papers

QMDec 29, 2022
SESNet: sequence-structure feature-integrated deep learning method for data-efficient protein engineering

Mingchen Li, Liqi Kang, Yi Xiong et al.

Deep learning has been widely used for protein engineering. However, it is limited by the lack of sufficient experimental data to train an accurate model for predicting the functional fitness of high-order mutants. Here, we develop SESNet, a supervised deep-learning model to predict the fitness for protein mutants by leveraging both sequence and structure information, and exploiting attention mechanism. Our model integrates local evolutionary context from homologous sequences, the global evolutionary context encoding rich semantic from the universal protein sequence space and the structure information accounting for the microenvironment around each residue in a protein. We show that SESNet outperforms state-of-the-art models for predicting the sequence-function relationship on 26 deep mutational scanning datasets. More importantly, we propose a data augmentation strategy by leveraging the data from unsupervised models to pre-train our model. After that, our model can achieve strikingly high accuracy in prediction of the fitness of protein mutants, especially for the higher order variants (> 4 mutation sites), when finetuned by using only a small number of experimental mutation data (<50). The strategy proposed is of great practical value as the required experimental effort, i.e., producing a few tens of experimental mutation data on a given protein, is generally affordable by an ordinary biochemical group and can be applied on almost any protein.

99.3DCMay 6
eLLM: Elastic Memory Management Framework for Efficient LLM Serving

Jiale Xu, Rui Zhang, Yi Xiong et al.

Large Language Models are increasingly being deployed in datacenters. Serving these models requires careful memory management, as their memory usage includes static weights, dynamic activations, and key-value caches. While static weights are constant and predictable, dynamic components such as activations and KV caches change frequently during runtime, presenting significant challenges for efficient memory management. Modern LLM serving systems typically handle runtime memory and KV caches at distinct abstraction levels: runtime memory management relies on static tensor abstractions, whereas KV caches utilize a page table-based virtualization layer built on top of the tensor abstraction. This virtualization dynamically manages KV caches to mitigate memory fragmentation. However, this dual-level approach fundamentally isolates runtime memory and KV cache management, resulting in suboptimal memory utilization under dynamic workloads, which can lead to a nearly 20% drop in throughput. To address these limitations, we propose eLLM, an elastic memory management framework inspired by the classical memory ballooning mechanism in operating systems. The core components of eLLM include: (1) Virtual Tensor Abstraction, which decouples the virtual address space of tensors from the physical GPU memory, creating a unified and flexible memory pool; (2) an Elastic Memory Mechanism that dynamically adjusts memory allocation through runtime memory inflation and deflation, leveraging CPU memory as an extensible buffer; and (3) a Lightweight Scheduling Strategy employing SLO-aware policies to optimize memory utilization and effectively balance performance trade-offs under stringent SLO constraints. Comprehensive evaluations demonstrate that eLLM significantly outperforms state-of-the-art systems, 2.32x higher decoding throughput, and supporting 3x larger batch sizes for 128K-token inputs.

CVJul 1, 2022
Fine-grained Correlation Loss for Regression

Chaoyu Chen, Xin Yang, Ruobing Huang et al.

Regression learning is classic and fundamental for medical image analysis. It provides the continuous mapping for many critical applications, like the attribute estimation, object detection, segmentation and non-rigid registration. However, previous studies mainly took the case-wise criteria, like the mean square errors, as the optimization objectives. They ignored the very important population-wise correlation criterion, which is exactly the final evaluation metric in many tasks. In this work, we propose to revisit the classic regression tasks with novel investigations on directly optimizing the fine-grained correlation losses. We mainly explore two complementary correlation indexes as learnable losses: Pearson linear correlation (PLC) and Spearman rank correlation (SRC). The contributions of this paper are two folds. First, for the PLC on global level, we propose a strategy to make it robust against the outliers and regularize the key distribution factors. These efforts significantly stabilize the learning and magnify the efficacy of PLC. Second, for the SRC on local level, we propose a coarse-to-fine scheme to ease the learning of the exact ranking order among samples. Specifically, we convert the learning for the ranking of samples into the learning of similarity relationships among samples. We extensively validate our method on two typical ultrasound image regression tasks, including the image quality assessment and bio-metric measurement. Experiments prove that, with the fine-grained guidance in directly optimizing the correlation, the regression performances are significantly improved. Our proposed correlation losses are general and can be extended to more important applications.

CVJul 1, 2022
Weakly-supervised High-fidelity Ultrasound Video Synthesis with Feature Decoupling

Jiamin Liang, Xin Yang, Yuhao Huang et al.

Ultrasound (US) is widely used for its advantages of real-time imaging, radiation-free and portability. In clinical practice, analysis and diagnosis often rely on US sequences rather than a single image to obtain dynamic anatomical information. This is challenging for novices to learn because practicing with adequate videos from patients is clinically unpractical. In this paper, we propose a novel framework to synthesize high-fidelity US videos. Specifically, the synthesis videos are generated by animating source content images based on the motion of given driving videos. Our highlights are three-fold. First, leveraging the advantages of self- and fully-supervised learning, our proposed system is trained in weakly-supervised manner for keypoint detection. These keypoints then provide vital information for handling complex high dynamic motions in US videos. Second, we decouple content and texture learning using the dual decoders to effectively reduce the model learning difficulty. Last, we adopt the adversarial training strategy with GAN losses for further improving the sharpness of the generated videos, narrowing the gap between real and synthesis videos. We validate our method on a large in-house pelvic dataset with high dynamic motion. Extensive evaluation metrics and user study prove the effectiveness of our proposed method.

BMJul 23, 2022
A Ligand-and-structure Dual-driven Deep Learning Method for the Discovery of Highly Potent GnRH1R Antagonist to treat Uterine Diseases

Song Li, Song Ke, Chenxing Yang et al.

Gonadotrophin-releasing hormone receptor (GnRH1R) is a promising therapeutic target for the treatment of uterine diseases. To date, several GnRH1R antagonists are available in clinical investigation without satisfying multiple property constraints. To fill this gap, we aim to develop a deep learning-based framework to facilitate the effective and efficient discovery of a new orally active small-molecule drug targeting GnRH1R with desirable properties. In the present work, a ligand-and-structure combined model, namely LS-MolGen, was firstly proposed for molecular generation by fully utilizing the information on the known active compounds and the structure of the target protein, which was demonstrated by its superior performance than ligand- or structure-based methods separately. Then, a in silico screening including activity prediction, ADMET evaluation, molecular docking and FEP calculation was conducted, where ~30,000 generated novel molecules were narrowed down to 8 for experimental synthesis and validation. In vitro and in vivo experiments showed that three of them exhibited potent inhibition activities (compound 5 IC50 = 0.856 nM, compound 6 IC50 = 0.901 nM, compound 7 IC50 = 2.54 nM) against GnRH1R, and compound 5 performed well in fundamental PK properties, such as half-life, oral bioavailability, and PPB, etc. We believed that the proposed ligand-and-structure combined molecular generative model and the whole computer-aided workflow can potentially be extended to similar tasks for de novo drug design or lead optimization.

74.0LGApr 14
Scaffold-Conditioned Preference Triplets for Controllable Molecular Optimization with Large Language Models

Yi Xiong, Liang Xiong, Xiaohong Ji et al.

Molecular property optimization is central to drug discovery, yet many deep learning methods rely on black-box scoring and offer limited control over scaffold preservation, often producing unstable or biologically implausible edits. While large language models (LLMs) are promising molecular generators, optimization remains constrained by the lack of chemistry-grounded preference supervision and principled data curation. We introduce \textbf{Scaffold-Conditioned Preference Triplets (SCPT)}, a pipeline that constructs similarity-constrained triplets $\langle\text{scaffold}, \text{better}, \text{worse}\rangle$ via scaffold alignment and chemistry-driven filters for validity, synthesizability, and meaningful property gains. Using these preferences, we align a pretrained molecular LLM as a conditional editor, enabling property-improving edits that retain the scaffold. Across single- and multi-objective benchmarks, SCPT improves optimization success and property gains while maintaining higher scaffold similarity than competitive baselines. Compared with representative non-LLM molecular optimization methods, SCPT-trained LLMs are better suited to scaffold-constrained and multi-objective optimization. In addition, models trained on single-property and two-property supervision generalize effectively to three-property tasks, indicating promising extrapolative generalization under limited higher-order supervision. SCPT also provides controllable data-construction knobs that yield a predictable similarity-gain frontier, enabling systematic adaptation to diverse optimization regimes.

61.8ARApr 1
Mapping Space Exploration for Multi-Chiplet Accelerators Targeting LLM Inference Serving Workloads

Boyu Li, Zongwei Zhu, Yi Xiong et al.

Large Language Models (LLMs) impose massive computational demands, driving the need for scalable multi-chiplet accelerators. However, existing mapping space exploration efforts for such accelerators primarily focus on traditional CNN/Transformer workloads and fail to adequately support the dynamic behaviors of mixed request types and variable sequence lengths in real-world LLM inference serving. To bridge this gap, we first propose a computation execution graph-based mapping encoding scheme that decouples micro-batches and layers, enabling fine-grained execution control on heterogeneous chiplets and flexibly representing various parallelism strategies. Second, building upon this scheme, we develop the Compass framework, which integrates an evaluation engine and a genetic algorithm-based mapping generation engine to achieve efficient mapping search. Compared to state-of-the-art works, our solution achieves an average EDP reduction of 63.12%.

LGMar 7, 2025Code
Every FLOP Counts: Scaling a 300B Mixture-of-Experts LING LLM without Premium GPUs

Ling Team, Binwei Zeng, Chao Huang et al.

In this technical report, we tackle the challenges of training large-scale Mixture of Experts (MoE) models, focusing on overcoming cost inefficiency and resource limitations prevalent in such systems. To address these issues, we present two differently sized MoE large language models (LLMs), namely Ling-Lite and Ling-Plus (referred to as "Bailing" in Chinese, spelled Bǎilíng in Pinyin). Ling-Lite contains 16.8 billion parameters with 2.75 billion activated parameters, while Ling-Plus boasts 290 billion parameters with 28.8 billion activated parameters. Both models exhibit comparable performance to leading industry benchmarks. This report offers actionable insights to improve the efficiency and accessibility of AI development in resource-constrained settings, promoting more scalable and sustainable technologies. Specifically, to reduce training costs for large-scale MoE models, we propose innovative methods for (1) optimization of model architecture and training processes, (2) refinement of training anomaly handling, and (3) enhancement of model evaluation efficiency. Additionally, leveraging high-quality data generated from knowledge graphs, our models demonstrate superior capabilities in tool use compared to other models. Ultimately, our experimental findings demonstrate that a 300B MoE LLM can be effectively trained on lower-performance devices while achieving comparable performance to models of a similar scale, including dense and MoE models. Compared to high-performance devices, utilizing a lower-specification hardware system during the pre-training phase demonstrates significant cost savings, reducing computing costs by approximately 20%. The models can be accessed at https://huggingface.co/inclusionAI.

45.1ROMar 18
Consistency-Driven Dual LSTM Models for Kinematic Control of a Wearable Soft Robotic Arm

Xingyu Chen, Yi Xiong, Li Wen

In this paper, we introduce a consistency-driven dual LSTM framework for accurately learning both the forward and inverse kinematics of a pneumatically actuated soft robotic arm integrated into a wearable device. This approach effectively captures the nonlinear and hysteretic behaviors of soft pneumatic actuators while addressing the one-to-many mapping challenge between actuation inputs and end-effector positions. By incorporating a cycle consistency loss, we enhance physical realism and improve the stability of inverse predictions. Extensive experiments-including trajectory tracking, ablation studies, and wearable demonstrations-confirm the effectiveness of our method. Results indicate that the inclusion of the consistency loss significantly boosts prediction accuracy and promotes physical consistency over conventional approaches. Moreover, the wearable soft robotic arm demonstrates strong human-robot collaboration capabilities and adaptability in everyday tasks such as object handover, obstacle-aware pick-and-place, and drawer operation. This work underscores the promising potential of learning-based kinematic models for human-centric, wearable robotic systems.

DCJun 15, 2025
Serving Large Language Models on Huawei CloudMatrix384

Pengfei Zuo, Huimin Lin, Junbo Deng et al.

The rapid evolution of large language models (LLMs), driven by growing parameter scales, adoption of mixture-of-experts (MoE) architectures, and expanding context lengths, imposes unprecedented demands on AI infrastructure. Traditional AI clusters face limitations in compute intensity, memory bandwidth, inter-chip communication, and latency, compounded by variable workloads and strict service-level objectives. Addressing these issues requires fundamentally redesigned hardware-software integration. This paper introduces Huawei CloudMatrix, a next-generation AI datacenter architecture, realized in the production-grade CloudMatrix384 supernode. It integrates 384 Ascend 910 NPUs and 192 Kunpeng CPUs interconnected via an ultra-high-bandwidth Unified Bus (UB) network, enabling direct all-to-all communication and dynamic pooling of resources. These features optimize performance for communication-intensive operations, such as large-scale MoE expert parallelism and distributed key-value cache access. To fully leverage CloudMatrix384, we propose CloudMatrix-Infer, an advanced LLM serving solution incorporating three core innovations: a peer-to-peer serving architecture that independently scales prefill, decode, and caching; a large-scale expert parallelism strategy supporting EP320 via efficient UB-based token dispatch; and hardware-aware optimizations including specialized operators, microbatch-based pipelining, and INT8 quantization. Evaluation with the DeepSeek-R1 model shows CloudMatrix-Infer achieves state-of-the-art efficiency: prefill throughput of 6,688 tokens/s per NPU and decode throughput of 1,943 tokens/s per NPU (<50 ms TPOT). It effectively balances throughput and latency, sustaining 538 tokens/s per NPU even under stringent 15 ms latency constraints, while INT8 quantization maintains model accuracy across benchmarks.

DCSep 3, 2025
FlashRecovery: Fast and Low-Cost Recovery from Failures for Large-Scale Training of LLMs

Haijun Zhang, Jinxiang Wang, Zhenhua Yu et al.

Large language models (LLMs) have made a profound impact across various fields due to their advanced capabilities. However, training these models at unprecedented scales requires extensive AI accelerator clusters and sophisticated parallelism strategies, which pose significant challenges in maintaining system reliability over prolonged training periods. A major concern is the substantial loss of training time caused by inevitable hardware and software failures. To address these challenges, we present FlashRecovery, a fast and low-cost failure recovery system comprising three core modules: (1) Active and real-time failure detection. This module performs continuous training state monitoring, enabling immediate identification of hardware and software failures within seconds, thus ensuring rapid incident response; (2) Scale-independent task restart. By employing different recovery strategies for normal and faulty nodes, combined with an optimized communication group reconstruction protocol, our approach ensures that the recovery time remains nearly constant, regardless of cluster scale; (3) Checkpoint-free recovery within one step. Our novel recovery mechanism enables single-step restoration, completely eliminating dependence on traditional checkpointing methods and their associated overhead. Collectively, these innovations enable FlashRecovery to achieve optimal Recovery Time Objective (RTO) and Recovery Point Objective (RPO), substantially improving the reliability and efficiency of long-duration LLM training. Experimental results demonstrate that FlashRecovery system can achieve training restoration on training cluster with 4, 800 devices in 150 seconds. We also verify that the time required for failure recovery is nearly consistent for different scales of training tasks.

CVMar 6
Artificial Intelligence for Detecting Fetal Orofacial Clefts and Advancing Medical Education

Yuanji Zhang, Yuhao Huang, Haoran Dou et al.

Orofacial clefts are among the most common congenital craniofacial abnormalities, yet accurate prenatal detection remains challenging due to the scarcity of experienced specialists and the relative rarity of the condition. Early and reliable diagnosis is essential to enable timely clinical intervention and reduce associated morbidity. Here we show that an artificial intelligence system, trained on over 45,139 ultrasound images from 9,215 fetuses across 22 hospitals, can diagnose fetal orofacial clefts with sensitivity and specificity exceeding 93% and 95% respectively, matching the performance of senior radiologists and substantially outperforming junior radiologists. When used as a medical copilot, the system raises junior radiologists' sensitivity by more than 6%. Beyond direct diagnostic assistance, the system also accelerates the development of clinical expertise. A pilot study involving 24 radiologists and trainees demonstrated that the model can improve the expertise development for rare conditions. This dual-purpose approach offers a scalable solution for improving both diagnostic accuracy and specialist training in settings where experienced radiologists are scarce.

DCApr 18, 2025
High-Throughput LLM inference on Heterogeneous Clusters

Yi Xiong, Jinqi Huang, Wenjie Huang et al.

Nowadays, many companies possess various types of AI accelerators, forming heterogeneous clusters. Efficiently leveraging these clusters for high-throughput large language model (LLM) inference services can significantly reduce costs and expedite task processing. However, LLM inference on heterogeneous clusters presents two main challenges. Firstly, different deployment configurations can result in vastly different performance. The number of possible configurations is large, and evaluating the effectiveness of a specific setup is complex. Thus, finding an optimal configuration is not an easy task. Secondly, LLM inference instances within a heterogeneous cluster possess varying processing capacities, leading to different processing speeds for handling inference requests. Evaluating these capacities and designing a request scheduling algorithm that fully maximizes the potential of each instance is challenging. In this paper, we propose a high-throughput inference service system on heterogeneous clusters. First, the deployment configuration is optimized by modeling the resource amount and expected throughput and using the exhaustive search method. Second, a novel mechanism is proposed to schedule requests among instances, which fully considers the different processing capabilities of various instances. Extensive experiments show that the proposed scheduler improves throughput by 122.5% and 33.6% on two heterogeneous clusters, respectively.

GTMay 23, 2024
Is Thompson Sampling Susceptible to Algorithmic Collusion?

Yi Xiong, Ningyuan Chen, Xuefeng Gao

When two players are engaged in a repeated game with unknown payoff matrices, they may use single-agent multi-armed bandit algorithms to choose the actions independent of each other. We show that when the players use Thompson sampling, the game dynamics converges to the Nash equilibrium under a mild assumption on the payoff matrices. Therefore, algorithmic collusion doesn't arise in this case despite the fact that the players do not intentionally deploy competitive strategies. To prove the convergence result, we find that the framework developed in stochastic approximation doesn't apply, because of the sporadic and infrequent updates of the inferior actions and the lack of Lipschitz continuity. We develop a novel sample-path-wise approach to show the convergence. However, when the payoff matrices do not satisfy the assumption, the game may converge to collusive outcomes.

IVOct 30, 2023
FetusMapV2: Enhanced Fetal Pose Estimation in 3D Ultrasound

Chaoyu Chen, Xin Yang, Yuhao Huang et al.

Fetal pose estimation in 3D ultrasound (US) involves identifying a set of associated fetal anatomical landmarks. Its primary objective is to provide comprehensive information about the fetus through landmark connections, thus benefiting various critical applications, such as biometric measurements, plane localization, and fetal movement monitoring. However, accurately estimating the 3D fetal pose in US volume has several challenges, including poor image quality, limited GPU memory for tackling high dimensional data, symmetrical or ambiguous anatomical structures, and considerable variations in fetal poses. In this study, we propose a novel 3D fetal pose estimation framework (called FetusMapV2) to overcome the above challenges. Our contribution is three-fold. First, we propose a heuristic scheme that explores the complementary network structure-unconstrained and activation-unreserved GPU memory management approaches, which can enlarge the input image resolution for better results under limited GPU memory. Second, we design a novel Pair Loss to mitigate confusion caused by symmetrical and similar anatomical structures. It separates the hidden classification task from the landmark localization task and thus progressively eases model learning. Last, we propose a shape priors-based self-supervised learning by selecting the relatively stable landmarks to refine the pose online. Extensive experiments and diverse applications on a large-scale fetal US dataset including 1000 volumes with 22 landmarks per volume demonstrate that our method outperforms other strong competitors.

CVAug 11, 2021
Statistical Dependency Guided Contrastive Learning for Multiple Labeling in Prenatal Ultrasound

Shuangchi He, Zehui Lin, Xin Yang et al.

Standard plane recognition plays an important role in prenatal ultrasound (US) screening. Automatically recognizing the standard plane along with the corresponding anatomical structures in US image can not only facilitate US image interpretation but also improve diagnostic efficiency. In this study, we build a novel multi-label learning (MLL) scheme to identify multiple standard planes and corresponding anatomical structures of fetus simultaneously. Our contribution is three-fold. First, we represent the class correlation by word embeddings to capture the fine-grained semantic and latent statistical concurrency. Second, we equip the MLL with a graph convolutional network to explore the inner and outer relationship among categories. Third, we propose a novel cluster relabel-based contrastive learning algorithm to encourage the divergence among ambiguous classes. Extensive validation was performed on our large in-house dataset. Our approach reports the highest accuracy as 90.25% for standard planes labeling, 85.59% for planes and structures labeling and mAP as 94.63%. The proposed MLL scheme provides a novel perspective for standard plane recognition and can be easily extended to other medical image classification tasks.

LGJul 31, 2021
Debiasing Samples from Online Learning Using Bootstrap

Ningyuan Chen, Xuefeng Gao, Yi Xiong

It has been recently shown in the literature that the sample averages from online learning experiments are biased when used to estimate the mean reward. To correct the bias, off-policy evaluation methods, including importance sampling and doubly robust estimators, typically calculate the conditional propensity score, which is ill-defined for non-randomized policies such as UCB. This paper provides a procedure to debias the samples using bootstrap, which doesn't require the knowledge of the reward distribution and can be applied to any adaptive policies. Numerical experiments demonstrate the effective bias reduction for samples generated by popular multi-armed bandit algorithms such as Explore-Then-Commit (ETC), UCB, Thompson sampling (TS) and $ε$-greedy (EG). We analyze and provide theoretical justifications for the procedure under the ETC algorithm, including the asymptotic convergence of the bias decay rate in the real and bootstrap worlds.

LGJul 8, 2021
Sublinear Regret for Learning POMDPs

Yi Xiong, Ningyuan Chen, Xuefeng Gao et al.

We study the model-based undiscounted reinforcement learning for partially observable Markov decision processes (POMDPs). The oracle we consider is the optimal policy of the POMDP with a known environment in terms of the average reward over an infinite horizon. We propose a learning algorithm for this problem, building on spectral method-of-moments estimations for hidden Markov models, the belief error control in POMDPs and upper-confidence-bound methods for online learning. We establish a regret bound of $O(T^{2/3}\sqrt{\log T})$ for the proposed learning algorithm where $T$ is the learning horizon. This is, to the best of our knowledge, the first algorithm achieving sublinear regret with respect to our oracle for learning general POMDPs.

CVMay 22, 2021
Searching Collaborative Agents for Multi-plane Localization in 3D Ultrasound

Xin Yang, Yuhao Huang, Ruobing Huang et al.

3D ultrasound (US) has become prevalent due to its rich spatial and diagnostic information not contained in 2D US. Moreover, 3D US can contain multiple standard planes (SPs) in one shot. Thus, automatically localizing SPs in 3D US has the potential to improve user-independence and scanning-efficiency. However, manual SP localization in 3D US is challenging because of the low image quality, huge search space and large anatomical variability. In this work, we propose a novel multi-agent reinforcement learning (MARL) framework to simultaneously localize multiple SPs in 3D US. Our contribution is four-fold. First, our proposed method is general and it can accurately localize multiple SPs in different challenging US datasets. Second, we equip the MARL system with a recurrent neural network (RNN) based collaborative module, which can strengthen the communication among agents and learn the spatial relationship among planes effectively. Third, we explore to adopt the neural architecture search (NAS) to automatically design the network architecture of both the agents and the collaborative module. Last, we believe we are the first to realize automatic SP localization in pelvic US volumes, and note that our approach can handle both normal and abnormal uterus cases. Extensively validated on two challenging datasets of the uterus and fetal brain, our proposed method achieves the average localization accuracy of 7.03 degrees/1.59mm and 9.75 degrees/1.19mm. Experimental results show that our light-weight MARL model has higher accuracy than state-of-the-art methods.

IVMar 26, 2021
Agent with Warm Start and Adaptive Dynamic Termination for Plane Localization in 3D Ultrasound

Xin Yang, Haoran Dou, Ruobing Huang et al.

Accurate standard plane (SP) localization is the fundamental step for prenatal ultrasound (US) diagnosis. Typically, dozens of US SPs are collected to determine the clinical diagnosis. 2D US has to perform scanning for each SP, which is time-consuming and operator-dependent. While 3D US containing multiple SPs in one shot has the inherent advantages of less user-dependency and more efficiency. Automatically locating SP in 3D US is very challenging due to the huge search space and large fetal posture variations. Our previous study proposed a deep reinforcement learning (RL) framework with an alignment module and active termination to localize SPs in 3D US automatically. However, termination of agent search in RL is important and affects the practical deployment. In this study, we enhance our previous RL framework with a newly designed adaptive dynamic termination to enable an early stop for the agent searching, saving at most 67% inference time, thus boosting the accuracy and efficiency of the RL framework at the same time. Besides, we validate the effectiveness and generalizability of our algorithm extensively on our in-house multi-organ datasets containing 433 fetal brain volumes, 519 fetal abdomen volumes, and 683 uterus volumes. Our approach achieves localization error of 2.52mm/10.26 degrees, 2.48mm/10.39 degrees, 2.02mm/10.48 degrees, 2.00mm/14.57 degrees, 2.61mm/9.71 degrees, 3.09mm/9.58 degrees, 1.49mm/7.54 degrees for the transcerebellar, transventricular, transthalamic planes in fetal brain, abdominal plane in fetal abdomen, and mid-sagittal, transverse and coronal planes in uterus, respectively. Experimental results show that our method is general and has the potential to improve the efficiency and standardization of US scanning.

IVJan 11, 2021
Generalize Ultrasound Image Segmentation via Instant and Plug & Play Style Transfer

Zhendong Liu, Xiaoqiong Huang, Xin Yang et al.

Deep segmentation models that generalize to images with unknown appearance are important for real-world medical image analysis. Retraining models leads to high latency and complex pipelines, which are impractical in clinical settings. The situation becomes more severe for ultrasound image analysis because of their large appearance shifts. In this paper, we propose a novel method for robust segmentation under unknown appearance shifts. Our contribution is three-fold. First, we advance a one-stage plug-and-play solution by embedding hierarchical style transfer units into a segmentation architecture. Our solution can remove appearance shifts and perform segmentation simultaneously. Second, we adopt Dynamic Instance Normalization to conduct precise and dynamic style transfer in a learnable manner, rather than previously fixed style normalization. Third, our solution is fast and lightweight for routine clinical adoption. Given 400*400 image input, our solution only needs an additional 0.2ms and 1.92M FLOPs to handle appearance shifts compared to the baseline pipeline. Extensive experiments are conducted on a large dataset from three vendors demonstrate our proposed method enhances the robustness of deep segmentation models.

CVJul 30, 2020
Searching Collaborative Agents for Multi-plane Localization in 3D Ultrasound

Yuhao Huang, Xin Yang, Rui Li et al.

3D ultrasound (US) is widely used due to its rich diagnostic information, portability and low cost. Automated standard plane (SP) localization in US volume not only improves efficiency and reduces user-dependence, but also boosts 3D US interpretation. In this study, we propose a novel Multi-Agent Reinforcement Learning (MARL) framework to localize multiple uterine SPs in 3D US simultaneously. Our contribution is two-fold. First, we equip the MARL with a one-shot neural architecture search (NAS) module to obtain the optimal agent for each plane. Specifically, Gradient-based search using Differentiable Architecture Sampler (GDAS) is employed to accelerate and stabilize the training process. Second, we propose a novel collaborative strategy to strengthen agents' communication. Our strategy uses recurrent neural network (RNN) to learn the spatial relationship among SPs effectively. Extensively validated on a large dataset, our approach achieves the accuracy of 7.05 degree/2.21mm, 8.62 degree/2.36mm and 5.93 degree/0.89mm for the mid-sagittal, transverse and coronal plane localization, respectively. The proposed MARL framework can significantly increase the plane localization accuracy and reduce the computational cost and model size.

CVApr 1, 2020
Region Proposal Network with Graph Prior and IoU-Balance Loss for Landmark Detection in 3D Ultrasound

Chaoyu Chen, Xin Yang, Ruobing Huang et al.

3D ultrasound (US) can facilitate detailed prenatal examinations for fetal growth monitoring. To analyze a 3D US volume, it is fundamental to identify anatomical landmarks of the evaluated organs accurately. Typical deep learning methods usually regress the coordinates directly or involve heatmap-matching. However, these methods struggle to deal with volumes with large sizes and the highly-varying positions and orientations of fetuses. In this work, we exploit an object detection framework to detect landmarks in 3D fetal facial US volumes. By regressing multiple parameters of the landmark-centered bounding box (B-box) with a strict criteria, the proposed model is able to pinpoint the exact location of the targeted landmarks. Specifically, the model uses a 3D region proposal network (RPN) to generate 3D candidate regions, followed by several 3D classification branches to select the best candidate. It also adopts an IoU-balance loss to improve communications between branches that benefits the learning process. Furthermore, it leverages a distance-based graph prior to regularize the training and helps to reduce false positive predictions. The performance of the proposed framework is evaluated on a 3D US dataset to detect five key fetal facial landmarks. Results showed the proposed method outperforms some of the state-of-the-art methods in efficacy and efficiency.

IVFeb 14, 2020
Remove Appearance Shift for Ultrasound Image Segmentation via Fast and Universal Style Transfer

Zhendong Liu, Xin Yang, Rui Gao et al.

Deep Neural Networks (DNNs) suffer from the performance degradation when image appearance shift occurs, especially in ultrasound (US) image segmentation. In this paper, we propose a novel and intuitive framework to remove the appearance shift, and hence improve the generalization ability of DNNs. Our work has three highlights. First, we follow the spirit of universal style transfer to remove appearance shifts, which was not explored before for US images. Without sacrificing image structure details, it enables the arbitrary style-content transfer. Second, accelerated with Adaptive Instance Normalization block, our framework achieved real-time speed required in the clinical US scanning. Third, an efficient and effective style image selection strategy is proposed to ensure the target-style US image and testing content US image properly match each other. Experiments on two large US datasets demonstrate that our methods are superior to state-of-the-art methods on making DNNs robust against various appearance shifts.

LGJan 26, 2020
Regime Switching Bandits

Xiang Zhou, Yi Xiong, Ningyuan Chen et al.

We study a multi-armed bandit problem where the rewards exhibit regime switching. Specifically, the distributions of the random rewards generated from all arms are modulated by a common underlying state modeled as a finite-state Markov chain. The agent does not observe the underlying state and has to learn the transition matrix and the reward distributions. We propose a learning algorithm for this problem, building on spectral method-of-moments estimations for hidden Markov models, belief error control in partially observable Markov decision processes and upper-confidence-bound methods for online learning. We also establish an upper bound $O(T^{2/3}\sqrt{\log T})$ for the proposed learning algorithm where $T$ is the learning horizon. Finally, we conduct proof-of-concept experiments to illustrate the performance of the learning algorithm.

IVOct 10, 2019
Agent with Warm Start and Active Termination for Plane Localization in 3D Ultrasound

Haoran Dou, Xin Yang, Jikuan Qian et al.

Standard plane localization is crucial for ultrasound (US) diagnosis. In prenatal US, dozens of standard planes are manually acquired with a 2D probe. It is time-consuming and operator-dependent. In comparison, 3D US containing multiple standard planes in one shot has the inherent advantages of less user-dependency and more efficiency. However, manual plane localization in US volume is challenging due to the huge search space and large fetal posture variation. In this study, we propose a novel reinforcement learning (RL) framework to automatically localize fetal brain standard planes in 3D US. Our contribution is two-fold. First, we equip the RL framework with a landmark-aware alignment module to provide warm start and strong spatial bounds for the agent actions, thus ensuring its effectiveness. Second, instead of passively and empirically terminating the agent inference, we propose a recurrent neural network based strategy for active termination of the agent's interaction procedure. This improves both the accuracy and efficiency of the localization system. Extensively validated on our in-house large dataset, our approach achieves the accuracy of 3.4mm/9.6° and 2.7mm/9.1° for the transcerebellar and transthalamic plane localization, respectively. Ourproposed RL framework is general and has the potential to improve the efficiency and standardization of US scanning.