Lonny Lundsten

Eric Orenstein, Kevin Barnard, Lonny Lundsten et al.

Ocean scientists have been collecting visual data to study marine organisms for decades. These images and videos are extremely valuable both for basic science and environmental monitoring tasks. There are tools for automatically processing these data, but none that are capable of handling the extreme variability in sample populations, image quality, and habitat characteristics that are common in visual sampling of the ocean. Such distribution shifts can occur over very short physical distances and in narrow time windows. Creating models that are able to recognize when an image or video sequence contains a new organism, an unusual collection of animals, or is otherwise out-of-sample is critical to fully leverage visual data in the ocean. The FathomNet2023 competition dataset presents a realistic scenario where the set of animals in the target data differs from the training data. The challenge is both to identify the organisms in a target image and assess whether it is out-of-sample.

Kakani Katija, Eric Orenstein, Brian Schlining et al.

The ocean is experiencing unprecedented rapid change, and visually monitoring marine biota at the spatiotemporal scales needed for responsible stewardship is a formidable task. As baselines are sought by the research community, the volume and rate of this required data collection rapidly outpaces our abilities to process and analyze them. Recent advances in machine learning enables fast, sophisticated analysis of visual data, but have had limited success in the ocean due to lack of data standardization, insufficient formatting, and demand for large, labeled datasets. To address this need, we built FathomNet, an open-source image database that standardizes and aggregates expertly curated labeled data. FathomNet has been seeded with existing iconic and non-iconic imagery of marine animals, underwater equipment, debris, and other concepts, and allows for future contributions from distributed data sources. We demonstrate how FathomNet data can be used to train and deploy models on other institutional video to reduce annotation effort, and enable automated tracking of underwater concepts when integrated with robotic vehicles. As FathomNet continues to grow and incorporate more labeled data from the community, we can accelerate the processing of visual data to achieve a healthy and sustainable global ocean.

Kevin Barnard, Elaine Liu, Kristine Walz et al.

Benchmarking multi-object tracking and object detection model performance is an essential step in machine learning model development, as it allows researchers to evaluate model detection and tracker performance on human-generated 'test' data, facilitating consistent comparisons between models and trackers and aiding performance optimization. In this study, a novel benchmark video dataset was developed and used to assess the performance of several Monterey Bay Aquarium Research Institute object detection models and a FathomNet single-class object detection model together with several trackers. The dataset consists of four video sequences representing midwater and benthic deep-sea habitats. Performance was evaluated using Higher Order Tracking Accuracy, a metric that balances detection, localization, and association accuracy. To the best of our knowledge, this is the first publicly available benchmark for multi-object tracking in deep-sea video footage. We provide the benchmark data, a clearly documented workflow for generating additional benchmark videos, as well as example Python notebooks for computing metrics.

Genevieve Patterson, Joost Daniels, Benjamin Woodward et al.

Can computer vision help us explore the ocean? The ultimate challenge for computer vision is to recognize any visual phenomena, more than only the objects and animals humans encounter in their terrestrial lives. Previous datasets have explored everyday objects and fine-grained categories humans see frequently. We present the FathomVerse v0 detection dataset to push the limits of our field by exploring animals that rarely come in contact with people in the deep sea. These animals present a novel vision challenge. The FathomVerse v0 dataset consists of 3843 images with 8092 bounding boxes from 12 distinct morphological groups recorded at two locations on the deep seafloor that are new to computer vision. It features visually perplexing scenarios such as an octopus intertwined with a sea star, and confounding categories like vampire squids and sea spiders. This dataset can push forward research on topics like fine-grained transfer learning, novel category discovery, species distribution modeling, and carbon cycle analysis, all of which are important to the care and husbandry of our planet.

Océane Boulais, Ben Woodward, Brian Schlining et al.

Thousands of hours of marine video data are collected annually from remotely operated vehicles (ROVs) and other underwater assets. However, current manual methods of analysis impede the full utilization of collected data for real time algorithms for ROV and large biodiversity analyses. FathomNet is a novel baseline image training set, optimized to accelerate development of modern, intelligent, and automated analysis of underwater imagery. Our seed data set consists of an expertly annotated and continuously maintained database with more than 26,000 hours of videotape, 6.8 million annotations, and 4,349 terms in the knowledge base. FathomNet leverages this data set by providing imagery, localizations, and class labels of underwater concepts in order to enable machine learning algorithm development. To date, there are more than 80,000 images and 106,000 localizations for 233 different classes, including midwater and benthic organisms. Our experiments consisted of training various deep learning algorithms with approaches to address weakly supervised localization, image labeling, object detection and classification which prove to be promising. While we find quality results on prediction for this new dataset, our results indicate that we are ultimately in need of a larger data set for ocean exploration.