Yanis Labrak

BigScience Workshop, Teven Le Scao, Angela Fan et al. · allen-ai, berkeley

Large language models (LLMs) have been shown to be able to perform new tasks based on a few demonstrations or natural language instructions. While these capabilities have led to widespread adoption, most LLMs are developed by resource-rich organizations and are frequently kept from the public. As a step towards democratizing this powerful technology, we present BLOOM, a 176B-parameter open-access language model designed and built thanks to a collaboration of hundreds of researchers. BLOOM is a decoder-only Transformer language model that was trained on the ROOTS corpus, a dataset comprising hundreds of sources in 46 natural and 13 programming languages (59 in total). We find that BLOOM achieves competitive performance on a wide variety of benchmarks, with stronger results after undergoing multitask prompted finetuning. To facilitate future research and applications using LLMs, we publicly release our models and code under the Responsible AI License.

Jason Alan Fries, Leon Weber, Natasha Seelam et al. · stanford, utoronto

Training and evaluating language models increasingly requires the construction of meta-datasets --diverse collections of curated data with clear provenance. Natural language prompting has recently lead to improved zero-shot generalization by transforming existing, supervised datasets into a diversity of novel pretraining tasks, highlighting the benefits of meta-dataset curation. While successful in general-domain text, translating these data-centric approaches to biomedical language modeling remains challenging, as labeled biomedical datasets are significantly underrepresented in popular data hubs. To address this challenge, we introduce BigBIO a community library of 126+ biomedical NLP datasets, currently covering 12 task categories and 10+ languages. BigBIO facilitates reproducible meta-dataset curation via programmatic access to datasets and their metadata, and is compatible with current platforms for prompt engineering and end-to-end few/zero shot language model evaluation. We discuss our process for task schema harmonization, data auditing, contribution guidelines, and outline two illustrative use cases: zero-shot evaluation of biomedical prompts and large-scale, multi-task learning. BigBIO is an ongoing community effort and is available at https://github.com/bigscience-workshop/biomedical

Yanis Labrak, Adrien Bazoge, Richard Dufour et al.

In recent years, pre-trained language models (PLMs) achieve the best performance on a wide range of natural language processing (NLP) tasks. While the first models were trained on general domain data, specialized ones have emerged to more effectively treat specific domains. In this paper, we propose an original study of PLMs in the medical domain on French language. We compare, for the first time, the performance of PLMs trained on both public data from the web and private data from healthcare establishments. We also evaluate different learning strategies on a set of biomedical tasks. In particular, we show that we can take advantage of already existing biomedical PLMs in a foreign language by further pre-train it on our targeted data. Finally, we release the first specialized PLMs for the biomedical field in French, called DrBERT, as well as the largest corpus of medical data under free license on which these models are trained.

Yanis Labrak, Adrien Bazoge, Richard Dufour et al.

This paper introduces FrenchMedMCQA, the first publicly available Multiple-Choice Question Answering (MCQA) dataset in French for medical domain. It is composed of 3,105 questions taken from real exams of the French medical specialization diploma in pharmacy, mixing single and multiple answers. Each instance of the dataset contains an identifier, a question, five possible answers and their manual correction(s). We also propose first baseline models to automatically process this MCQA task in order to report on the current performances and to highlight the difficulty of the task. A detailed analysis of the results showed that it is necessary to have representations adapted to the medical domain or to the MCQA task: in our case, English specialized models yielded better results than generic French ones, even though FrenchMedMCQA is in French. Corpus, models and tools are available online.

Qingyu Chen, Alexis Allot, Robert Leaman et al.

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

Sergio Burdisso, Séverin Baroudi, Yanis Labrak et al.

We present SDialog, an MIT-licensed open-source Python toolkit that unifies dialog generation, evaluation and mechanistic interpretability into a single end-to-end framework for building and analyzing LLM-based conversational agents. Built around a standardized \texttt{Dialog} representation, SDialog provides: (1) persona-driven multi-agent simulation with composable orchestration for controlled, synthetic dialog generation, (2) comprehensive evaluation combining linguistic metrics, LLM-as-a-judge and functional correctness validators, (3) mechanistic interpretability tools for activation inspection and steering via feature ablation and induction, and (4) audio generation with full acoustic simulation including 3D room modeling and microphone effects. The toolkit integrates with all major LLM backends, enabling mixed-backend experiments under a unified API. By coupling generation, evaluation, and interpretability in a dialog-centric architecture, SDialog enables researchers to build, benchmark and understand conversational systems more systematically.

Yanis Labrak, Mickael Rouvier, Richard Dufour

We evaluate four state-of-the-art instruction-tuned large language models (LLMs) -- ChatGPT, Flan-T5 UL2, Tk-Instruct, and Alpaca -- on a set of 13 real-world clinical and biomedical natural language processing (NLP) tasks in English, such as named-entity recognition (NER), question-answering (QA), relation extraction (RE), etc. Our overall results demonstrate that the evaluated LLMs begin to approach performance of state-of-the-art models in zero- and few-shot scenarios for most tasks, and particularly well for the QA task, even though they have never seen examples from these tasks before. However, we observed that the classification and RE tasks perform below what can be achieved with a specifically trained model for the medical field, such as PubMedBERT. Finally, we noted that no LLM outperforms all the others on all the studied tasks, with some models being better suited for certain tasks than others.

Yanis Labrak, Adrien Bazoge, Emmanuel Morin et al.

Large Language Models (LLMs) have demonstrated remarkable versatility in recent years, offering potential applications across specialized domains such as healthcare and medicine. Despite the availability of various open-source LLMs tailored for health contexts, adapting general-purpose LLMs to the medical domain presents significant challenges. In this paper, we introduce BioMistral, an open-source LLM tailored for the biomedical domain, utilizing Mistral as its foundation model and further pre-trained on PubMed Central. We conduct a comprehensive evaluation of BioMistral on a benchmark comprising 10 established medical question-answering (QA) tasks in English. We also explore lightweight models obtained through quantization and model merging approaches. Our results demonstrate BioMistral's superior performance compared to existing open-source medical models and its competitive edge against proprietary counterparts. Finally, to address the limited availability of data beyond English and to assess the multilingual generalization of medical LLMs, we automatically translated and evaluated this benchmark into 7 other languages. This marks the first large-scale multilingual evaluation of LLMs in the medical domain. Datasets, multilingual evaluation benchmarks, scripts, and all the models obtained during our experiments are freely released.

Yanis Labrak, Adrien Bazoge, Oumaima El Khettari et al.

The biomedical domain has sparked a significant interest in the field of Natural Language Processing (NLP), which has seen substantial advancements with pre-trained language models (PLMs). However, comparing these models has proven challenging due to variations in evaluation protocols across different models. A fair solution is to aggregate diverse downstream tasks into a benchmark, allowing for the assessment of intrinsic PLMs qualities from various perspectives. Although still limited to few languages, this initiative has been undertaken in the biomedical field, notably English and Chinese. This limitation hampers the evaluation of the latest French biomedical models, as they are either assessed on a minimal number of tasks with non-standardized protocols or evaluated using general downstream tasks. To bridge this research gap and account for the unique sensitivities of French, we present the first-ever publicly available French biomedical language understanding benchmark called DrBenchmark. It encompasses 20 diversified tasks, including named-entity recognition, part-of-speech tagging, question-answering, semantic textual similarity, and classification. We evaluate 8 state-of-the-art pre-trained masked language models (MLMs) on general and biomedical-specific data, as well as English specific MLMs to assess their cross-lingual capabilities. Our experiments reveal that no single model excels across all tasks, while generalist models are sometimes still competitive.

Yanis Labrak, David Grünert, Séverin Baroudi et al.

Long-context audio reasoning is underserved in both training data and evaluation. Existing benchmarks target short-context tasks, and the open-ended generation tasks most relevant to long-context reasoning pose well-known challenges for automatic evaluation. We propose a synthetic data generation pipeline designed to serve both as a training resource and as a controlled evaluation environment, and instantiate it for first-visit doctor-patient conversations with SOAP note generation as the task. The pipeline has three stages, persona-driven dialogue generation, multi-speaker audio synthesis with overlap/pause modeling, room acoustics, and sound events, and LLM-based reference SOAP note production, built entirely on open-weight models. We release 8,800 synthetic conversations with 1.3k hours of corresponding audio and reference notes. Evaluating current open-weight systems, we find that cascaded approaches still substantially outperform end-to-end models.

Santiago Cuervo, Adel Moumen, Yanis Labrak et al. · mit

Text-Speech Language Models (TSLMs) -- language models trained to jointly process and generate text and speech -- are commonly trained through an early modality fusion/fission approach, in which both modalities are fed and predicted from a shared backbone via linear layers. We hypothesize that this approach limits cross-modal transfer by neglecting feature compositionality -- specifically, the finer-grained nature of speech representations compared to text -- preventing the emergence of a shared feature hierarchy within model layers. In this paper, we argue that this limitation can be addressed through late fusion and fission, with a fission process that accesses both high- and low-level features for speech generation. Our models implementing these principles, SmolTolk, rival or surpass state-of-the-art TSLMs trained with orders of magnitude more compute, and achieve significantly improved cross-modal performance relative to early fusion/fission baselines. Representation analyses further suggest that our method enhances the model's ability to abstract higher-level, more semantic features from speech, and leads to increasingly shared representation spaces across layers.

Yanis Labrak, Adrien Bazoge, Beatrice Daille et al.

Subword tokenization has become the prevailing standard in the field of natural language processing (NLP) over recent years, primarily due to the widespread utilization of pre-trained language models. This shift began with Byte-Pair Encoding (BPE) and was later followed by the adoption of SentencePiece and WordPiece. While subword tokenization consistently outperforms character and word-level tokenization, the precise factors contributing to its success remain unclear. Key aspects such as the optimal segmentation granularity for diverse tasks and languages, the influence of data sources on tokenizers, and the role of morphological information in Indo-European languages remain insufficiently explored. This is particularly pertinent for biomedical terminology, characterized by specific rules governing morpheme combinations. Despite the agglutinative nature of biomedical terminology, existing language models do not explicitly incorporate this knowledge, leading to inconsistent tokenization strategies for common terms. In this paper, we seek to delve into the complexities of subword tokenization in French biomedical domain across a variety of NLP tasks and pinpoint areas where further enhancements can be made. We analyze classical tokenization algorithms, including BPE and SentencePiece, and introduce an original tokenization strategy that integrates morpheme-enriched word segmentation into existing tokenization methods.

Yanis Labrak, Richard Dufour, Mickaël Rouvier

This paper investigates discrete unit representations in Speech Language Models (SLMs), focusing on optimizing speech modeling during continual pre-training. In this paper, we systematically examine how model architecture, data representation, and training robustness influence the pre-training stage in which we adapt existing pre-trained language models to the speech modality. Our experiments highlight the role of speech encoders and clustering granularity across different model scales, showing how optimal discretization strategies vary with model capacity. By examining cluster distribution and phonemic alignments, we investigate the effective use of discrete vocabulary, uncovering both linguistic and paralinguistic patterns. Additionally, we explore the impact of clustering data selection on model robustness, highlighting the importance of domain matching between discretization training and target applications.

Yanis Labrak, Markus Frohmann, Gabriel Meseguer-Brocal et al.

In recent years, the use of large language models (LLMs) to generate music content, particularly lyrics, has gained in popularity. These advances provide valuable tools for artists and enhance their creative processes, but they also raise concerns about copyright violations, consumer satisfaction, and content spamming. Previous research has explored content detection in various domains. However, no work has focused on the text modality, lyrics, in music. To address this gap, we curated a diverse dataset of real and synthetic lyrics from multiple languages, music genres, and artists. The generation pipeline was validated using both humans and automated methods. We performed a thorough evaluation of existing synthetic text detection approaches on lyrics, a previously unexplored data type. We also investigated methods to adapt the best-performing features to lyrics through unsupervised domain adaptation. Following both music and industrial constraints, we examined how well these approaches generalize across languages, scale with data availability, handle multilingual language content, and perform on novel genres in few-shot settings. Our findings show promising results that could inform policy decisions around AI-generated music and enhance transparency for users.

Yanis Labrak, Adel Moumen, Richard Dufour et al.

In the rapidly evolving landscape of spoken question-answering (SQA), the integration of large language models (LLMs) has emerged as a transformative development. Conventional approaches often entail the use of separate models for question audio transcription and answer selection, resulting in significant resource utilization and error accumulation. To tackle these challenges, we explore the effectiveness of end-to-end (E2E) methodologies for SQA in the medical domain. Our study introduces a novel zero-shot SQA approach, compared to traditional cascade systems. Through a comprehensive evaluation conducted on a new open benchmark of 8 medical tasks and 48 hours of synthetic audio, we demonstrate that our approach requires up to 14.7 times fewer resources than a combined 1.3B parameters LLM with a 1.55B parameters ASR model while improving average accuracy by 0.5\%. These findings underscore the potential of E2E methodologies for SQA in resource-constrained contexts.