LGNov 13, 2025
Pretrained Joint Predictions for Scalable Batch Bayesian Optimization of Molecular DesignsMiles Wang-Henderson, Benjamin Kaufman, Edward Williams et al.
Batched synthesis and testing of molecular designs is the key bottleneck of drug development. There has been great interest in leveraging biomolecular foundation models as surrogates to accelerate this process. In this work, we show how to obtain scalable probabilistic surrogates of binding affinity for use in Batch Bayesian Optimization (Batch BO). This demands parallel acquisition functions that hedge between designs and the ability to rapidly sample from a joint predictive density to approximate them. Through the framework of Epistemic Neural Networks (ENNs), we obtain scalable joint predictive distributions of binding affinity on top of representations taken from large structure-informed models. Key to this work is an investigation into the importance of prior networks in ENNs and how to pretrain them on synthetic data to improve downstream performance in Batch BO. Their utility is demonstrated by rediscovering known potent EGFR inhibitors on a semi-synthetic benchmark in up to 5x fewer iterations, as well as potent inhibitors from a real-world small-molecule library in up to 10x fewer iterations, offering a promising solution for large-scale drug discovery applications.
SEApr 20
Towards an Agentic LLM-based Approach to Requirement Formalization from Unstructured SpecificationsAlberto Tagliaferro, Bruno Guindani, Livia Lestingi et al.
Early-stage specifications of safety-critical systems are typically expressed in natural language, making it difficult to derive formal properties suitable for verification and needed to guarantee safety. While recent Large Language Model (LLM)-based approaches can generate formal artifacts from text, they mainly focus on syntactic correctness and do not ensure semantic alignment between informal requirements and formally verifiable properties. We propose an agentic methodology that automatically extracts verification-ready properties from unstructured specifications. The modular pipeline combines requirement extraction, compatibility filtering with respect to a target formalism, and translation into formal properties. Experimental results across three scenarios show that the pipeline generates syntactically and semantically aligned formal properties with a 77.8% accuracy. By explicitly accounting for modeling and verification constraints, the approach is a paving step towards exploiting Artificial Intelligence (AI) to bridge the gap between informal descriptions and semantically meaningful formal verification.
CVMar 13
A Deformable Attention-Based Detection Transformer with Cross-Scale Feature Fusion for Industrial Coil Spring InspectionMatteo Rossi, Pony Matt
Automated visual inspection of locomotive coil springs presents significant challenges due to the morphological diversity of surface defects, substantial scale variations, and complex industrial backgrounds. This paper proposes MSD-DETR (Multi-Scale Deformable Detection Transformer), a novel detection framework that addresses these challenges through three key innovations: (1) a structural re-parameterization strategy that decouples training-time multi-branch topology from inference-time efficiency, enhancing feature extraction while maintaining real-time performance; (2) a deformable attention mechanism that enables content-adaptive spatial sampling, allowing dynamic focus on defect-relevant regions regardless of morphological irregularity; and (3) a cross-scale feature fusion architecture incorporating GSConv modules and VoVGSCSP blocks for effective multi-resolution information aggregation. Comprehensive experiments on a real-world locomotive coil spring dataset demonstrate that MSD-DETR achieves 92.4\% mAP@0.5 at 98 FPS, outperforming state-of-the-art detectors including YOLOv8 (+3.1\% mAP) and the baseline RT-DETR (+2.8\% mAP) while maintaining comparable inference speed, establishing a new benchmark for industrial coil spring quality inspection.
IVOct 16, 2024
Cascade learning in multi-task encoder-decoder networks for concurrent bone segmentation and glenohumeral joint assessment in shoulder CT scansLuca Marsilio, Davide Marzorati, Matteo Rossi et al.
Osteoarthritis is a degenerative condition affecting bones and cartilage, often leading to osteophyte formation, bone density loss, and joint space narrowing. Treatment options to restore normal joint function vary depending on the severity of the condition. This work introduces an innovative deep-learning framework processing shoulder CT scans. It features the semantic segmentation of the proximal humerus and scapula, the 3D reconstruction of bone surfaces, the identification of the glenohumeral (GH) joint region, and the staging of three common osteoarthritic-related pathologies: osteophyte formation (OS), GH space reduction (JS), and humeroscapular alignment (HSA). The pipeline comprises two cascaded CNN architectures: 3D CEL-UNet for segmentation and 3D Arthro-Net for threefold classification. A retrospective dataset of 571 CT scans featuring patients with various degrees of GH osteoarthritic-related pathologies was used to train, validate, and test the pipeline. Root mean squared error and Hausdorff distance median values for 3D reconstruction were 0.22mm and 1.48mm for the humerus and 0.24mm and 1.48mm for the scapula, outperforming state-of-the-art architectures and making it potentially suitable for a PSI-based shoulder arthroplasty preoperative plan context. The classification accuracy for OS, JS, and HSA consistently reached around 90% across all three categories. The computational time for the inference pipeline was less than 15s, showcasing the framework's efficiency and compatibility with orthopedic radiology practice. The outcomes represent a promising advancement toward the medical translation of artificial intelligence tools. This progress aims to streamline the preoperative planning pipeline delivering high-quality bone surfaces and supporting surgeons in selecting the most suitable surgical approach according to the unique patient joint conditions.
SPMar 11, 2025
Finger-to-Chest Style Transfer-assisted Deep Learning Method For Photoplethysmogram Waveform Restoration with Timing PreservationSara Maria Pagotto, Federico Tognoni, Matteo Rossi et al.
Wearable measurements, such as those obtained by photoplethysmogram (PPG) sensors are highly susceptible to motion artifacts and noise, affecting cardiovascular measures. Chest-acquired PPG signals are especially vulnerable, with signal degradation primarily resulting from lower perfusion, breathing-induced motion, and mechanical interference from chest movements. Traditional restoration methods often degrade the signal, and supervised deep learning (DL) struggles with random and systematic distortions, requiring very large datasets for successful training. To efficiently restore chest PPG waveform, we propose a style transfer-assisted cycle-consistent generative adversarial network, called starGAN, whose performance is evaluated on a three-channel PPG signal (red, green,and infrared) acquired by a chest-worn multi-modal sensor, called Soundi. Two identical devices are adopted, one sensor to collect the PPG signal on the chest, considered to feature low quality and undergoing restoration, and another sensor to obtain a high-quality PPG signal measured on the finger, considered the reference signal. Extensive validation over some 8,000 5-second chunks collected from 40 subjects showed about 90% correlation of the restored chest PPG with the reference finger PPG, with a 30% improvement over raw chest PPG. Likewise, the signal-to-noise ratio improved on average of about 125%, over the three channels. The agreement with heart-rate computed from concurrent ECG was extremely high, overcoming 84% on average. These results demonstrate effective signal restoration, comparable with findings in recent literature papers. Significance: PPG signals collected from wearable devices are highly susceptible to artifacts, making innovative AI-based techniques fundamental towards holistic health assessments in a single device.
ROJul 23, 2020
Statistical Model Checking of Human-Robot Interaction ScenariosLivia Lestingi, Mehrnoosh Askarpour, Marcello M. Bersani et al.
Robots are soon going to be deployed in non-industrial environments. Before society can take such a step, it is necessary to endow complex robotic systems with mechanisms that make them reliable enough to operate in situations where the human factor is predominant. This calls for the development of robotic frameworks that can soundly guarantee that a collection of properties are verified at all times during operation. While developing a mission plan, robots should take into account factors such as human physiology. In this paper, we present an example of how a robotic application that involves human interaction can be modeled through hybrid automata, and analyzed by using statistical model-checking. We exploit statistical techniques to determine the probability with which some properties are verified, thus easing the state-space explosion problem. The analysis is performed using the Uppaal tool. In addition, we used Uppaal to run simulations that allowed us to show non-trivial time dynamics that describe the behavior of the real system, including human-related variables. Overall, this process allows developers to gain useful insights into their application and to make decisions about how to improve it to balance efficiency and user satisfaction.
ROJul 23, 2020
Co-Simulation of Human-Robot Collaboration: from Temporal Logic to 3D SimulationMehrnoosh Askarpour, Matteo Rossi, Omer Tiryakiler
Human-Robot Collaboration (HRC) is rapidly replacing the traditional application of robotics in the manufacturing industry. Robots and human operators no longer have to perform their tasks in segregated areas and are capable of working in close vicinity and performing hybrid tasks -- performed partially by humans and by robots. We have presented a methodology in an earlier work [16] to promote and facilitate formally modeling HRC systems, which are notoriously safety-critical. Relying on temporal logic modeling capabilities and automated model checking tools, we built a framework to formally model HRC systems and verify the physical safety of human operator against ISO 10218-2 [10] standard. In order to make our proposed formal verification framework more appealing to safety engineers, whom are usually not very fond of formal modeling and verification techniques, we decided to couple our model checking approach with a 3D simulator that demonstrates the potential hazardous situations to the safety engineers in a more transparent way. This paper reports our co-simulation approach, using Morse simulator [4] and Zot model checker [14].
LOJun 22, 2018
Verifying MITL formulae on Timed Automata considering a Continuous Time SemanticsClaudio Menghi, Marcello Bersani, Matteo Rossi et al.
Timed Automata (TA) is de facto a standard modelling formalism to represent systems when the interest is the analysis of their behaviour as time progresses. This modelling formalism is mostly used for checking whether the behaviours of a system satisfy a set of properties of interest. Even if efficient model-checkers for Timed Automata exist, these tools are not easily configurable. First, they are not designed to easily allow adding new Timed Automata constructs, such as new synchronization mechanisms or communication procedures, but they assume a fixed set of Timed Automata constructs. Second, they usually do not support the full Metric Interval Temporal Logic (MITL) and rely on a precise semantics for the logic in which the property of interest is specified which cannot be easily modified and customized. Finally, they do not easily allow using different solvers that may speed up verification in different contexts. This paper presents a novel technique to perform model checking of full Metric Interval Temporal Logic (MITL) properties on TA. The technique relies on the translation of both the TA and the MITL formula into an intermediate Constraint LTL over clocks (CLTLoc) formula which is verified through an available decision procedure. The technique is flexible since the intermediate logic allows the encoding of new semantics as well as new TA constructs, by just adding new CLTLoc formulae. Furthermore, our technique is not bound to a specific solver as the intermediate CLTLoc formula can be verified using different procedures.