Lukas Heinrich

Francesco Armando Di Bello, Anton Charkin-Gorbulin, Kyle Cranmer et al.

A configurable calorimeter simulation for AI (COCOA) applications is presented, based on the Geant4 toolkit and interfaced with the Pythia event generator. This open-source project is aimed to support the development of machine learning algorithms in high energy physics that rely on realistic particle shower descriptions, such as reconstruction, fast simulation, and low-level analysis. Specifications such as the granularity and material of its nearly hermetic geometry are user-configurable. The tool is supplemented with simple event processing including topological clustering, jet algorithms, and a nearest-neighbors graph construction. Formatting is also provided to visualise events using the Phoenix event display software.

E. A. Huerta, Ben Blaiszik, L. Catherine Brinson et al.

A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data. The principles were also meant to apply to other digital assets, at a high level, and over time, the FAIR guiding principles have been re-interpreted or extended to include the software, tools, algorithms, and workflows that produce data. FAIR principles are now being adapted in the context of AI models and datasets. Here, we present the perspectives, vision, and experiences of researchers from different countries, disciplines, and backgrounds who are leading the definition and adoption of FAIR principles in their communities of practice, and discuss outcomes that may result from pursuing and incentivizing FAIR AI research. The material for this report builds on the FAIR for AI Workshop held at Argonne National Laboratory on June 7, 2022.

Matthew Leigh, Samuel Klein, François Charton et al.

In this work, we significantly enhance masked particle modeling (MPM), a self-supervised learning scheme for constructing highly expressive representations of unordered sets relevant to developing foundation models for high-energy physics. In MPM, a model is trained to recover the missing elements of a set, a learning objective that requires no labels and can be applied directly to experimental data. We achieve significant performance improvements over previous work on MPM by addressing inefficiencies in the implementation and incorporating a more powerful decoder. We compare several pre-training tasks and introduce new reconstruction methods that utilize conditional generative models without data tokenization or discretization. We show that these new methods outperform the tokenized learning objective from the original MPM on a new test bed for foundation models for jets, which includes using a wide variety of downstream tasks relevant to jet physics, such as classification, secondary vertex finding, and track identification.

Lukas Heinrich, Siddharth Mishra-Sharma, Chris Pollard et al.

When analyzing real-world data it is common to work with event ensembles, which comprise sets of observations that collectively constrain the parameters of an underlying model of interest. Such models often have a hierarchical structure, where "local" parameters impact individual events and "global" parameters influence the entire dataset. We introduce practical approaches for frequentist and Bayesian dataset-wide probabilistic inference in cases where the likelihood is intractable, but simulations can be realized via a hierarchical forward model. We construct neural estimators for the likelihood(-ratio) or posterior and show that explicitly accounting for the model's hierarchical structure can lead to significantly tighter parameter constraints. We ground our discussion using case studies from the physical sciences, focusing on examples from particle physics and cosmology.

Michael Kagan, Lukas Heinrich

We propose to apply several gradient estimation techniques to enable the differentiation of programs with discrete randomness in High Energy Physics. Such programs are common in High Energy Physics due to the presence of branching processes and clustering-based analysis. Thus differentiating such programs can open the way for gradient based optimization in the context of detector design optimization, simulator tuning, or data analysis and reconstruction optimization. We discuss several possible gradient estimation strategies, including the recent Stochastic AD method, and compare them in simplified detector design experiments. In doing so we develop, to the best of our knowledge, the first fully differentiable branching program.

Nathan Simpson, Lukas Heinrich

The advent of deep learning has yielded powerful tools to automatically compute gradients of computations. This is because training a neural network equates to iteratively updating its parameters using gradient descent to find the minimum of a loss function. Deep learning is then a subset of a broader paradigm; a workflow with free parameters that is end-to-end optimisable, provided one can keep track of the gradients all the way through. This work introduces neos: an example implementation following this paradigm of a fully differentiable high-energy physics workflow, capable of optimising a learnable summary statistic with respect to the expected sensitivity of an analysis. Doing this results in an optimisation process that is aware of the modelling and treatment of systematic uncertainties.

Matthias Vigl, Nicole Hartman, Michael Kagan et al.

The success of Large Language Models (LLMs) has established that scaling compute, through joint increases in model capacity and dataset size, is the primary driver of performance in modern machine learning. While machine learning has long been an integral component of High Energy Physics (HEP) data analysis workflows, the compute used to train state-of-the-art HEP models remains orders of magnitude below that of industry foundation models. With scaling laws only beginning to be studied in the field, we investigate neural scaling laws for boosted jet classification using the public JetClass dataset. We derive compute optimal scaling laws and identify an effective performance limit that can be consistently approached through increased compute. We study how data repetition, common in HEP where simulation is expensive, modifies the scaling yielding a quantifiable effective dataset size gain. We then study how the scaling coefficients and asymptotic performance limits vary with the choice of input features and particle multiplicity, demonstrating that increased compute reliably drives performance toward an asymptotic limit, and that more expressive, lower-level features can raise the performance limit and improve results at fixed dataset size.

Antoine Wehenkel, Michael Kagan, Lukas Heinrich et al.

Neural posterior estimation has emerged as a powerful tool for amortized inference, with growing adoption across scientific and applied domains. In many of these applications, the conditioning variable is a set of observations whose elements depend not only on the target but also on unknown factors shared across the set. Optimal inference therefore requires treating the set jointly, which in turn requires training the estimator at the deployment set size -- a regime where memory and compute quickly become prohibitive. We introduce a simple, theoretically grounded strategy that decouples representation learning from posterior modeling. Our method trains a mean-pool Deep Set on sets of size at most two, producing an encoder that generalizes to arbitrary set sizes. The inference head is then finetuned on pre-aggregated embeddings, making training cost essentially independent of the deployment set size N. Across scalar, image, multi-view 3D, molecular, and high-dimensional conditional generation benchmarks with N in the thousands, our approach matches or outperforms standard baselines at a fraction of the compute.

Richard Hildebrandt, Evangelos Kourlitis, Baran Hashemi et al.

We introduce a new strategy for compositional neural surrogates for radiation-matter interactions, a key task spanning domains from particle physics through nuclear and space engineering to medical physics. Exploiting the locality and the Markov nature of particle interactions, we create a \emph{next-particle prediction} kernel using hybrid discrete-continuous transformer models based on Riemannian Flow Matching on product manifolds. The model generates variable-sized typed sets of particles and radiation side effects that are the result of the interaction of an incident particle with a material volume. The resulting kernel can be composed to simulate unseen large-scale material distributions in a zero-shot manner. Unlike mechanistic simulators, our model is designed to be differentiable, provides tractable likelihoods for future downstream applications. A significant computational speed-up on GPU compared to CPU-bound mechanistic simulation is observed for single-kernel execution. We evaluate the model at the kernel level and demonstrate predictive stability over multi-round autoregressive rollouts. We additionally release a novel 20M-event radiation-matter interaction dataset for further research.

Annalena Kofler, Vincent Stimper, Mikhail Mikhasenko et al.

High-energy physics requires the generation of large numbers of simulated data samples from complex but analytically tractable distributions called matrix elements. Surrogate models, such as normalizing flows, are gaining popularity for this task due to their computational efficiency. We adopt an approach based on Flow Annealed importance sampling Bootstrap (FAB) that evaluates the differentiable target density during training and helps avoid the costly generation of training data in advance. We show that FAB reaches higher sampling efficiency with fewer target evaluations in high dimensions in comparison to other methods.

Lukas Heinrich, Benjamin Huth, Andreas Salzburger et al.

The application of Graph Neural Networks (GNN) in track reconstruction is a promising approach to cope with the challenges arising at the High-Luminosity upgrade of the Large Hadron Collider (HL-LHC). GNNs show good track-finding performance in high-multiplicity scenarios and are naturally parallelizable on heterogeneous compute architectures. Typical high-energy-physics detectors have high resolution in the innermost layers to support vertex reconstruction but lower resolution in the outer parts. GNNs mainly rely on 3D space-point information, which can cause reduced track-finding performance in the outer regions. In this contribution, we present a novel combination of GNN-based track finding with the classical Combinatorial Kalman Filter (CKF) algorithm to circumvent this issue: The GNN resolves the track candidates in the inner pixel region, where 3D space points can represent measurements very well. These candidates are then picked up by the CKF in the outer regions, where the CKF performs well even for 1D measurements. Using the ACTS infrastructure, we present a proof of concept based on truth tracking in the pixels as well as a dedicated GNN pipeline trained on $t\bar{t}$ events with pile-up 200 in the OpenDataDetector.

Ludwig Burger, Annalena Kofler, Lukas Heinrich et al.

Stochastic kinetic models are ubiquitous in physics, yet inferring their parameters from experimental data remains challenging. In deterministic models, parameter inference often relies on gradients, as they can be obtained efficiently through automatic differentiation. However, these tools cannot be directly applied to stochastic simulation algorithms (SSA) such as the Gillespie algorithm, since sampling from a discrete set of reactions introduces non-differentiable operations. In this work, we adopt three gradient estimators from machine learning for the Gillespie SSA: the Gumbel-Softmax Straight-Through (GS-ST) estimator, the Score Function estimator, and the Alternative Path estimator. We compare the properties of all estimators in two representative systems exhibiting relaxation or oscillatory dynamics, where the latter requires gradient estimation of time-dependent objective functions. We find that the GS-ST estimator mostly yields well-behaved gradient estimates, but exhibits diverging variance in challenging parameter regimes, resulting in unsuccessful parameter inference. In these cases, the other estimators provide more robust, lower variance gradients. Our results demonstrate that gradient-based parameter inference can be integrated effectively with the Gillespie SSA, with different estimators offering complementary advantages.

Matthias Vigl, Lukas Heinrich

Recently, the benefit of heavily overparameterized models has been observed in machine learning tasks: models with enough capacity to easily cross the \emph{interpolation threshold} improve in generalization error compared to the classical bias-variance tradeoff regime. We demonstrate this behavior for the first time in particle physics data and explore when and where `double descent' appears and under which circumstances overparameterization results in a performance gain.

Sascha Caron, Andreas Ipp, Gert Aarts et al.

Artificial intelligence (AI) is transforming scientific research, with deep learning methods playing a central role in data analysis, simulations, and signal detection across particle, nuclear, and astroparticle physics. Within the JENA communities-ECFA, NuPECC, and APPEC-and as part of the EuCAIF initiative, AI integration is advancing steadily. However, broader adoption remains constrained by challenges such as limited computational resources, a lack of expertise, and difficulties in transitioning from research and development (R&D) to production. This white paper provides a strategic roadmap, informed by a community survey, to address these barriers. It outlines critical infrastructure requirements, prioritizes training initiatives, and proposes funding strategies to scale AI capabilities across fundamental physics over the next five years.

Tobias Golling, Lukas Heinrich, Michael Kagan et al.

We propose masked particle modeling (MPM) as a self-supervised method for learning generic, transferable, and reusable representations on unordered sets of inputs for use in high energy physics (HEP) scientific data. This work provides a novel scheme to perform masked modeling based pre-training to learn permutation invariant functions on sets. More generally, this work provides a step towards building large foundation models for HEP that can be generically pre-trained with self-supervised learning and later fine-tuned for a variety of down-stream tasks. In MPM, particles in a set are masked and the training objective is to recover their identity, as defined by a discretized token representation of a pre-trained vector quantized variational autoencoder. We study the efficacy of the method in samples of high energy jets at collider physics experiments, including studies on the impact of discretization, permutation invariance, and ordering. We also study the fine-tuning capability of the model, showing that it can be adapted to tasks such as supervised and weakly supervised jet classification, and that the model can transfer efficiently with small fine-tuning data sets to new classes and new data domains.

Matthias Vigl, Nicole Hartman, Lukas Heinrich

In this work we demonstrate that significant gains in performance and data efficiency can be achieved in High Energy Physics (HEP) by moving beyond the standard paradigm of sequential optimization or reconstruction and analysis components. We conceptually connect HEP reconstruction and analysis to modern machine learning workflows such as pretraining, finetuning, domain adaptation and high-dimensional embedding spaces and quantify the gains in the example usecase of searches of heavy resonances decaying via an intermediate di-Higgs system to four $b$-jets.

Lukas Heinrich, Michael Kagan

MadJax is a tool for generating and evaluating differentiable matrix elements of high energy scattering processes. As such, it is a step towards a differentiable programming paradigm in high energy physics that facilitates the incorporation of high energy physics domain knowledge, encoded in simulation software, into gradient based learning and optimization pipelines. MadJax comprises two components: (a) a plugin to the general purpose matrix element generator MadGraph that integrates matrix element and phase space sampling code with the JAX differentiable programming framework, and (b) a standalone wrapping API for accessing the matrix element code and its gradients, which are computed with automatic differentiation. The MadJax implementation and example applications of simulation based inference and normalizing flow based matrix element modeling, with capabilities enabled uniquely with differentiable matrix elements, are presented.

Atılım Güneş Baydin, Lei Shao, Wahid Bhimji et al.

Probabilistic programming languages (PPLs) are receiving widespread attention for performing Bayesian inference in complex generative models. However, applications to science remain limited because of the impracticability of rewriting complex scientific simulators in a PPL, the computational cost of inference, and the lack of scalable implementations. To address these, we present a novel PPL framework that couples directly to existing scientific simulators through a cross-platform probabilistic execution protocol and provides Markov chain Monte Carlo (MCMC) and deep-learning-based inference compilation (IC) engines for tractable inference. To guide IC inference, we perform distributed training of a dynamic 3DCNN--LSTM architecture with a PyTorch-MPI-based framework on 1,024 32-core CPU nodes of the Cori supercomputer with a global minibatch size of 128k: achieving a performance of 450 Tflop/s through enhancements to PyTorch. We demonstrate a Large Hadron Collider (LHC) use-case with the C++ Sherpa simulator and achieve the largest-scale posterior inference in a Turing-complete PPL.

Atılım Güneş Baydin, Lukas Heinrich, Wahid Bhimji et al.

We present a novel probabilistic programming framework that couples directly to existing large-scale simulators through a cross-platform probabilistic execution protocol, which allows general-purpose inference engines to record and control random number draws within simulators in a language-agnostic way. The execution of existing simulators as probabilistic programs enables highly interpretable posterior inference in the structured model defined by the simulator code base. We demonstrate the technique in particle physics, on a scientifically accurate simulation of the tau lepton decay, which is a key ingredient in establishing the properties of the Higgs boson. Inference efficiency is achieved via inference compilation where a deep recurrent neural network is trained to parameterize proposal distributions and control the stochastic simulator in a sequential importance sampling scheme, at a fraction of the computational cost of a Markov chain Monte Carlo baseline.

Kim Albertsson, Piero Altoe, Dustin Anderson et al.

Machine learning has been applied to several problems in particle physics research, beginning with applications to high-level physics analysis in the 1990s and 2000s, followed by an explosion of applications in particle and event identification and reconstruction in the 2010s. In this document we discuss promising future research and development areas for machine learning in particle physics. We detail a roadmap for their implementation, software and hardware resource requirements, collaborative initiatives with the data science community, academia and industry, and training the particle physics community in data science. The main objective of the document is to connect and motivate these areas of research and development with the physics drivers of the High-Luminosity Large Hadron Collider and future neutrino experiments and identify the resource needs for their implementation. Additionally we identify areas where collaboration with external communities will be of great benefit.

Mario Lezcano Casado, Atilim Gunes Baydin, David Martinez Rubio et al.

We consider the problem of Bayesian inference in the family of probabilistic models implicitly defined by stochastic generative models of data. In scientific fields ranging from population biology to cosmology, low-level mechanistic components are composed to create complex generative models. These models lead to intractable likelihoods and are typically non-differentiable, which poses challenges for traditional approaches to inference. We extend previous work in "inference compilation", which combines universal probabilistic programming and deep learning methods, to large-scale scientific simulators, and introduce a C++ based probabilistic programming library called CPProb. We successfully use CPProb to interface with SHERPA, a large code-base used in particle physics. Here we describe the technical innovations realized and planned for this library.