Logan Nye

Logan Nye

Digital twin technology has is anticipated to transform healthcare, enabling personalized medicines and support, earlier diagnoses, simulated treatment outcomes, and optimized surgical plans. Digital twins are readily gaining traction in industries like manufacturing, supply chain logistics, and civil infrastructure. Not in patient care, however. The challenge of modeling complex diseases with multimodal patient data and the computational complexities of analyzing it have stifled digital twin adoption in the biomedical vertical. Yet, these major obstacles can potentially be handled by approaching these models in a different way. This paper proposes a novel framework for addressing the barriers to clinical twin modeling created by computational costs and modeling complexities. We propose structuring patient health data as a knowledge graph and using closed-form continuous-time liquid neural networks, for real-time analytics. By synthesizing multimodal patient data and leveraging the flexibility and efficiency of closed form continuous time networks and knowledge graph ontologies, our approach enables real time insights, personalized medicine, early diagnosis and intervention, and optimal surgical planning. This novel approach provides a comprehensive and adaptable view of patient health along with real-time analytics, paving the way for digital twin simulations and other anticipated benefits in healthcare.

Logan Nye

Hirschberg's algorithm (1975) reduces the space complexity for the longest common subsequence problem from $O(N^2)$ to $O(N)$ via recursive midpoint bisection on a grid dynamic program (DP). We show that the underlying idea generalizes to a broad class of dynamic programs with local dependencies on directed acyclic graphs (DP DAGs). Modeling a DP as deterministic time evolution over a topologically ordered DAG with frontier width $ω$ and bounded in-degree, and assuming a max-type semiring with deterministic tie breaking, we prove that in a standard offline random-access model any such DP admits deterministic traceback in space $O(ω\log T + (\log T)^{O(1)})$ cells over a fixed finite alphabet, where $T$ is the number of states. Our construction replaces backward dynamic programs by forward-only recomputation and organizes the time order into a height-compressed recursion tree whose nodes expose small "middle frontiers'' across which every optimal path must pass. The framework yields near-optimal traceback bounds for asymmetric and banded sequence alignment, one-dimensional recurrences, and dynamic-programming formulations on graphs of bounded pathwidth. We also show that an $Ω(ω)$ space term (in bits) is unavoidable in forward single-pass models and discuss conjectured $\sqrt{T}$-type barriers in streaming settings, supporting the view that space-efficient traceback is a structural property of width-bounded DP DAGs rather than a peculiarity of grid-based algorithms.

Logan Nye

Zero-knowledge proofs allow verification of computations without revealing private information. However, existing systems require memory proportional to the computation size, which has historically limited use in large-scale applications and on mobile and edge devices. We solve this fundamental bottleneck by developing, to our knowledge, the first proof system with sublinear memory requirements for mainstream cryptographic constructions. Our approach processes computations in blocks using a space-efficient tree algorithm, reducing memory from linear scaling to square-root scaling--from $Θ(T)$ to $O(\sqrt{T} + \log T \log\log T)$ for computation size $T$--while maintaining the same proof generation time through a constant number of streaming passes. For widely-used linear polynomial commitment schemes (KZG/IPA), our method produces identical proofs and verification when using the same parameters and hashing only aggregate commitments into the challenge generation, preserving proof size and security. Hash-based systems also achieve square-root memory scaling though with slightly different proof structures. This advance enables zero-knowledge proofs on everyday devices and makes previously infeasible large computations verifiable, fundamentally democratizing access to privacy-preserving computation. Space-efficient zero knowledge proof systems create opportunities to reshape how trust is established in digital systems--from enabling widespread participation in decentralized networks to making verifiable scientific computing practical at unprecedented scales.

Logan Nye

We prove a square-root space simulation for deterministic multitape Turing machines, showing $\mathrm{TIME}[t]\subseteq \mathrm{SPACE}[O(\sqrt{t})]$ \emph{measured in tape cells over a fixed finite alphabet}. The key step is a Height Compression Theorem that uniformly (and in logspace) reshapes the canonical left-deep succinct computation tree for a block-respecting run into a binary tree whose evaluation-stack depth along any DFS path is $O(\log T)$ for $T=\lceil t/b\rceil$, while preserving $O(b)$ workspace at leaves and $O(1)$ at internal nodes. Edges have \emph{addressing/topology} checkable in $O(\log t)$ space, and \emph{semantic} correctness across merges is witnessed by an exact $O(b)$ bounded-window replay at the unique interface. Algorithmically, an Algebraic Replay Engine with constant-degree maps over a constant-size field, together with pointerless DFS, index-free streaming, and a \emph{rolling boundary buffer that prevents accumulation of leaf summaries}, ensures constant-size per-level tokens and eliminates wide counters, yielding the additive tradeoff $S(b)=O(b+t/b)$. Choosing $b=Θ(\sqrt{t})$ gives $O(\sqrt{t})$ space with no residual multiplicative polylog factors. The construction is uniform, relativizes, and is robust to standard model choices. Consequences include branching-program upper bounds $2^{O(\sqrt{s})}$ for size-$s$ bounded-fan-in circuits, tightened quadratic-time lower bounds for $\mathrm{SPACE}[n]$-complete problems via the standard hierarchy argument, and $O(\sqrt{t})$-space certifying interpreters; under explicit locality assumptions, the framework extends to geometric $d$-dimensional models. Conceptually, the work isolates path bookkeeping as the chief obstruction to $O(\sqrt{t})$ and removes it via structural height compression with per-path analysis rather than barrier-prone techniques.

Logan Nye

Neural networks excel at pattern recognition but struggle with reliable logical reasoning, often violating basic logical principles during inference. We address this limitation by developing a categorical framework that systematically constructs neural architectures with provable logical guarantees. Our approach treats logical theories as algebraic structures called Lawvere theories, which we transform into neural networks using categorical algebra in the 2-category of parametric maps. Unlike existing methods that impose logical constraints during training, our categorical construction embeds logical principles directly into the network's architectural structure, making logical violations mathematically impossible. We demonstrate this framework by constructing differentiable neural architectures for propositional logic that preserve boolean reasoning while remaining trainable via gradient descent. Our main theoretical result establishes a bijective correspondence between finitary logical theories and neural architectures, proving that every logically constrained network arises uniquely from our construction. This extends Categorical Deep Learning beyond geometric symmetries to semantic constraints, enabling automatic derivation of verified architectures from logical specifications. The framework provides mathematical foundations for trustworthy AI systems, with applications to theorem proving, formal verification, and safety-critical reasoning tasks requiring verifiable logical behavior.