Johnson Zhou

Johnson Zhou, Daniel Tanneberg, Forough Habibollahi et al.

Biological neural networks (BNNs) have been established as a powerful and adaptive substrate that offer the potential for incredibly energy and data efficient information processing with distinct learning mechanisms. Yet a core challenge to utilizing BNN for neurocomputation is determining the optimal encoding and decoding mechanisms between the traditional silicon computing interface and the living biology. Here, we propose an Embodied Neurocomputation framework as a systems-level approach to this multi-variable optimization encoding/decoding problem. We operationalize this approach through the first large-scale parameter optimization of encoding configurations for a BNN agent performing closed-loop navigation along an odor-style gradient in a simulated grid-world. Despite the relative simplicity of the task, the biological interactions gave rise to a massive multi-combinatorial search space for optimal parameters. By considering how the components of the system are interconnected and parameterized, we evaluated approximately 1,300 parameter combinations, over 4,000 hours of real-time agent-environment interactions, to identify 12 configurations that consistently demonstrated learning across multiple episodes. These configurations achieved significantly higher task performances than optimized silicon-based DQN agents under the same interaction budget. These findings represent an initial step toward robust and scalable goal-oriented learning using BNNs. Our framework establishes a foundation for applying task-driven neurocomputing and supports the development of field-wide benchmarks. In the long term, this work supports the development of hybrid bio-silicon architectures capable of efficient, adaptive and real-time computation, including the potential for robotic control applications.

Johnson Zhou, Joseph West, Krista A. Ehinger et al.

Objective. Electroencephalography (EEG) data is derived by sampling continuous neurological time series signals. In order to prepare EEG signals for machine learning, the signal must be divided into manageable segments. The current naive approach uses arbitrary fixed time slices, which may have limited biological relevance because brain states are not confined to fixed intervals. We investigate whether adaptive segmentation methods are beneficial for machine learning EEG analysis. Approach. We introduce a novel adaptive segmentation method, CTXSEG, that creates variable-length segments based on statistical differences in the EEG data and propose ways to use them with modern machine learning approaches that typically require fixed-length input. We assess CTXSEG using controllable synthetic data generated by our novel signal generator CTXGEN. While our CTXSEG method has general utility, we validate it on a real-world use case by applying it to an EEG seizure detection problem. We compare the performance of CTXSEG with fixed-length segmentation in the preprocessing step of a typical EEG machine learning pipeline for seizure detection. Main results. We found that using CTXSEG to prepare EEG data improves seizure detection performance compared to fixed-length approaches when evaluated using a standardized framework, without modifying the machine learning method, and requires fewer segments. Significance. This work demonstrates that adaptive segmentation with CTXSEG can be readily applied to modern machine learning approaches, with potential to improve performance. It is a promising alternative to fixed-length segmentation for signal preprocessing and should be considered as part of the standard preprocessing repertoire in EEG machine learning applications.