Tieke He

Yunhui Liu, Xinyi Gao, Tieke He et al.

Graph clustering, which involves the partitioning of nodes within a graph into disjoint clusters, holds significant importance for numerous subsequent applications. Recently, contrastive learning, known for utilizing supervisory information, has demonstrated encouraging results in deep graph clustering. This methodology facilitates the learning of favorable node representations for clustering by attracting positively correlated node pairs and distancing negatively correlated pairs within the representation space. Nevertheless, a significant limitation of existing methods is their inadequacy in thoroughly exploring node-wise similarity. For instance, some hypothesize that the node similarity matrix within the representation space is identical, ignoring the inherent semantic relationships among nodes. Given the fundamental role of instance similarity in clustering, our research investigates contrastive graph clustering from the perspective of the node similarity matrix. We argue that an ideal node similarity matrix within the representation space should accurately reflect the inherent semantic relationships among nodes, ensuring the preservation of semantic similarities in the learned representations. In response to this, we introduce a new framework, Reliable Node Similarity Matrix Guided Contrastive Graph Clustering (NS4GC), which estimates an approximately ideal node similarity matrix within the representation space to guide representation learning. Our method introduces node-neighbor alignment and semantic-aware sparsification, ensuring the node similarity matrix is both accurate and efficiently sparse. Comprehensive experiments conducted on $8$ real-world datasets affirm the efficacy of learning the node similarity matrix and the superior performance of NS4GC.

Zhipeng Wang, Boyang Yang, Yidong Wan et al.

Large Language Models (LLMs) perform well on automatic program repair (APR) for high-resource programming languages (HRPLs), but their effectiveness drops sharply in low-resource programming languages (LRPLs), due to a lack of sufficient verified buggy-fixed pairs for APR training. To address this challenge, we propose HELO-APR (High-resource Enabled LOw-resource APR), a two-stage APR framework that enables cross-lingual transfer of repair knowledge from HRPLs to LRPLs. HELO-APR (1) constructs high-quality LRPL training data by synthesizing LRPL buggy-fixed pairs from HRPL counterparts, preserving defect type consistency while ensuring the synthesized code is idiomatic, and then (2) adopts a curriculum learning strategy that progressively performs HRPL repair learning, cross-lingual repair alignment, and LRPL repair adaptation, improving repair effectiveness in LRPLs. Using C++ as the source HRPL and Ruby and Rust as the target LRPLs, experiments on xCodeEval show that HELO-APR consistently outperforms strong baselines, increasing Pass@1 from 31.32% to 48.65% on DeepSeek-Coder-6.7B and from 1.67% to 11.97% on CodeLlama-7B, while improving syntactic validity by raising the average target compilation rate on CodeLlama from 49.77% to 91.98%. On Defects4Ruby, HELO-APR increases BLEU-4 from 61.20 to 66.79 and ROUGE-1 from 76.76 to 83.59 on CodeLlama-7B, indicating higher similarity to developer patches in real-world settings. Finally, we conduct ablation studies to assess the necessity of each core component. These results suggest that verified cross-lingual supervision provides a reusable approach for improving LLM-based repair in low-resource languages.

Yunhui Liu, Huaisong Zhang, Tieke He et al.

Contrastive learning is a significant paradigm in graph self-supervised learning. However, it requires negative samples to prevent model collapse and learn discriminative representations. These negative samples inevitably lead to heavy computation, memory overhead and class collision, compromising the representation learning. Recent studies present that methods obviating negative samples can attain competitive performance and scalability enhancements, exemplified by bootstrapped graph latents (BGRL). However, BGRL neglects the inherent graph homophily, which provides valuable insights into underlying positive pairs. Our motivation arises from the observation that subtly introducing a few ground-truth positive pairs significantly improves BGRL. Although we can't obtain ground-truth positive pairs without labels under the self-supervised setting, edges in the graph can reflect noisy positive pairs, i.e., neighboring nodes often share the same label. Therefore, we propose to expand the positive pair set with node-neighbor pairs. Subsequently, we introduce a cross-attention module to predict the supportiveness score of a neighbor with respect to the anchor node. This score quantifies the positive support from each neighboring node, and is encoded into the training objective. Consequently, our method mitigates class collision from negative and noisy positive samples, concurrently enhancing intra-class compactness. Extensive experiments are conducted on five benchmark datasets and three downstream task node classification, node clustering, and node similarity search. The results demonstrate that our method generates node representations with enhanced intra-class compactness and achieves state-of-the-art performance.

Yunhui Liu, Tieke He, Qing Wu et al.

Attributed graph clustering, which aims to group the nodes of an attributed graph into disjoint clusters, has made promising advancements in recent years. However, most existing methods face challenges when applied to large graphs due to the expensive computational cost and high memory usage. In this paper, we introduce Scalable and Adaptive Spectral Embedding (SASE), a simple attributed graph clustering method devoid of parameter learning. SASE comprises three main components: node features smoothing via $k$-order simple graph convolution, scalable spectral clustering using random Fourier features, and adaptive order selection. With these designs, SASE not only effectively captures global cluster structures but also exhibits linear time and space complexity relative to the graph size. Empirical results demonstrate the superiority of SASE. For example, on the ArXiv dataset with 169K nodes and 1.17M edges, SASE achieves a 6.9\% improvement in ACC and a $5.87\times$ speedup compared to the runner-up, S3GC.

Shilong Yuan, Wei Yuan, Hongzhi Yin et al.

While language models have made many milestones in text inference and classification tasks, they remain susceptible to adversarial attacks that can lead to unforeseen outcomes. Existing works alleviate this problem by equipping language models with defense patches. However, these defense strategies often rely on impractical assumptions or entail substantial sacrifices in model performance. Consequently, enhancing the resilience of the target model using such defense mechanisms is a formidable challenge. This paper introduces an innovative model for robust text inference and classification, built upon diffusion models (ROIC-DM). Benefiting from its training involving denoising stages, ROIC-DM inherently exhibits greater robustness compared to conventional language models. Moreover, ROIC-DM can attain comparable, and in some cases, superior performance to language models, by effectively incorporating them as advisory components. Extensive experiments conducted with several strong textual adversarial attacks on three datasets demonstrate that (1) ROIC-DM outperforms traditional language models in robustness, even when the latter are fortified with advanced defense mechanisms; (2) ROIC-DM can achieve comparable and even better performance than traditional language models by using them as advisors.

Yunhui Liu, Tieke He, Tao Zheng et al.

Graph Contrastive Learning (GCL) has recently emerged as a promising graph self-supervised learning framework for learning discriminative node representations without labels. The widely adopted objective function of GCL benefits from two key properties: \emph{alignment} and \emph{uniformity}, which align representations of positive node pairs while uniformly distributing all representations on the hypersphere. The uniformity property plays a critical role in preventing representation collapse and is achieved by pushing apart augmented views of different nodes (negative pairs). As such, existing GCL methods inherently rely on increasing the quantity and quality of negative samples, resulting in heavy computational demands, memory overhead, and potential class collision issues. In this study, we propose a negative-free objective to achieve uniformity, inspired by the fact that points distributed according to a normalized isotropic Gaussian are uniformly spread across the unit hypersphere. Therefore, we can minimize the distance between the distribution of learned representations and the isotropic Gaussian distribution to promote the uniformity of node representations. Our method also distinguishes itself from other approaches by eliminating the need for a parameterized mutual information estimator, an additional projector, asymmetric structures, and, crucially, negative samples. Extensive experiments over seven graph benchmarks demonstrate that our proposal achieves competitive performance with fewer parameters, shorter training times, and lower memory consumption compared to existing GCL methods.

Yunhui Liu, Qizhuo Xie, Jinwei Shi et al.

Heterogeneous Text-Attributed Graphs (HTAGs), where different types of entities are not only associated with texts but also connected by diverse relationships, have gained widespread popularity and application across various domains. However, current research on text-attributed graph learning predominantly focuses on homogeneous graphs, which feature a single node and edge type, thus leaving a gap in understanding how methods perform on HTAGs. One crucial reason is the lack of comprehensive HTAG datasets that offer original textual content and span multiple domains of varying sizes. To this end, we introduce a collection of challenging and diverse benchmark datasets for realistic and reproducible evaluation of machine learning models on HTAGs. Our HTAG datasets are multi-scale, span years in duration, and cover a wide range of domains, including movie, community question answering, academic, literature, and patent networks. We further conduct benchmark experiments on these datasets with various graph neural networks. All source data, dataset construction codes, processed HTAGs, data loaders, benchmark codes, and evaluation setup are publicly available at GitHub and Hugging Face.

Yunhui Liu, Xinyi Gao, Tieke He et al.

Heterogeneous Graph Neural Networks (HGNNs) have achieved promising results in various heterogeneous graph learning tasks, owing to their superiority in capturing the intricate relationships and diverse relational semantics inherent in heterogeneous graph structures. However, the neighborhood-fetching latency incurred by structure dependency in HGNNs makes it challenging to deploy for latency-constrained applications that require fast inference. Inspired by recent GNN-to-MLP knowledge distillation frameworks, we introduce HG2M and HG2M+ to combine both HGNN's superior performance and MLP's efficient inference. HG2M directly trains student MLPs with node features as input and soft labels from teacher HGNNs as targets, and HG2M+ further distills reliable and heterogeneous semantic knowledge into student MLPs through reliable node distillation and reliable meta-path distillation. Experiments conducted on six heterogeneous graph datasets show that despite lacking structural dependencies, HG2Ms can still achieve competitive or even better performance than HGNNs and significantly outperform vanilla MLPs. Moreover, HG2Ms demonstrate a 379.24$\times$ speedup in inference over HGNNs on the large-scale IGB-3M-19 dataset, showcasing their ability for latency-sensitive deployments.

Yunhui Liu, Zhen Tao, Xiang Zhao et al.

Multiplex graphs, with multiple edge types (graph views) among common nodes, provide richer structural semantics and better modeling capabilities. Multiplex Graph Neural Networks (MGNNs), typically comprising view-specific GNNs and a multi-view integration layer, have achieved advanced performance in various downstream tasks. However, their reliance on neighborhood aggregation poses challenges for deployment in latency-sensitive applications. Motivated by recent GNN-to-MLP knowledge distillation frameworks, we propose Multiplex Graph-Free Neural Networks (MGFNN and MGFNN+) to combine MGNNs' superior performance and MLPs' efficient inference via knowledge distillation. MGFNN directly trains student MLPs with node features as input and soft labels from teacher MGNNs as targets. MGFNN+ further employs a low-rank approximation-based reparameterization to learn node-wise coefficients, enabling adaptive knowledge ensemble from each view-specific GNN. This node-wise multi-view ensemble distillation strategy allows student MLPs to learn more informative multiplex semantic knowledge for different nodes. Experiments show that MGFNNs achieve average accuracy improvements of about 10% over vanilla MLPs and perform comparably or even better to teacher MGNNs (accurate); MGFNNs achieve a 35.40$\times$-89.14$\times$ speedup in inference over MGNNs (efficient); MGFNN+ adaptively assigns different coefficients for multi-view ensemble distillation regarding different nodes (interpretable).

Yunhui Liu, Jiashun Cheng, Yiqing Lin et al.

Graph anomaly detection (GAD) has garnered increasing attention in recent years, yet remains challenging due to two key factors: (1) label scarcity stemming from the high cost of annotations and (2) homophily disparity at node and class levels. In this paper, we introduce Anomaly-Aware Pre-Training and Fine-Tuning (APF), a targeted and effective framework to mitigate the above challenges in GAD. In the pre-training stage, APF incorporates node-specific subgraphs selected via the Rayleigh Quotient, a label-free anomaly metric, into the learning objective to enhance anomaly awareness. It further introduces two learnable spectral polynomial filters to jointly learn dual representations that capture both general semantics and subtle anomaly cues. During fine-tuning, a gated fusion mechanism adaptively integrates pre-trained representations across nodes and dimensions, while an anomaly-aware regularization loss encourages abnormal nodes to preserve more anomaly-relevant information. Furthermore, we theoretically show that APF tends to achieve linear separability under mild conditions. Comprehensive experiments on 10 benchmark datasets validate the superior performance of APF in comparison to state-of-the-art baselines.

Yunhui Liu, Huaisong Zhang, Xinyi Gao et al.

Link Prediction (LP) is a crucial problem in graph-structured data. Graph Neural Networks (GNNs) have gained prominence in LP, with Graph AutoEncoders (GAEs) being a notable representation. However, our empirical findings reveal that GAEs' LP performance suffers heavily from the long-tailed node degree distribution, i.e., low-degree nodes tend to exhibit inferior LP performance compared to high-degree nodes. \emph{What causes this degree-related bias, and how can it be mitigated?} In this study, we demonstrate that the norm of node embeddings learned by GAEs exhibits variation among nodes with different degrees, underscoring its central significance in influencing the final performance of LP. Specifically, embeddings with larger norms tend to guide the decoder towards predicting higher scores for positive links and lower scores for negative links, thereby contributing to superior performance. This observation motivates us to improve GAEs' LP performance on low-degree nodes by increasing their embedding norms, which can be implemented simply yet effectively by introducing additional self-loops into the training objective for low-degree nodes. This norm augmentation strategy can be seamlessly integrated into existing GAE methods with light computational cost. Extensive experiments on various datasets and GAE methods show the superior performance of norm-augmented GAEs.

Wei Yuan, Hongzhi Yin, Tieke He et al.

Question Generation (QG), as a challenging Natural Language Processing task, aims at generating questions based on given answers and context. Existing QG methods mainly focus on building or training models for specific QG datasets. These works are subject to two major limitations: (1) They are dedicated to specific QG formats (e.g., answer-extraction or multi-choice QG), therefore, if we want to address a new format of QG, a re-design of the QG model is required. (2) Optimal performance is only achieved on the dataset they were just trained on. As a result, we have to train and keep various QG models for different QG datasets, which is resource-intensive and ungeneralizable. To solve the problems, we propose a model named Unified-QG based on lifelong learning techniques, which can continually learn QG tasks across different datasets and formats. Specifically, we first build a format-convert encoding to transform different kinds of QG formats into a unified representation. Then, a method named \emph{STRIDER} (\emph{S}imilari\emph{T}y \emph{R}egular\emph{I}zed \emph{D}ifficult \emph{E}xample \emph{R}eplay) is built to alleviate catastrophic forgetting in continual QG learning. Extensive experiments were conducted on $8$ QG datasets across $4$ QG formats (answer-extraction, answer-abstraction, multi-choice, and boolean QG) to demonstrate the effectiveness of our approach. Experimental results demonstrate that our Unified-QG can effectively and continually adapt to QG tasks when datasets and formats vary. In addition, we verify the ability of a single trained Unified-QG model in improving $8$ Question Answering (QA) systems' performance through generating synthetic QA data.