Yu Song

Yanyan Chen, Ruigang Fu, Yu Song et al.

Severe image degradation under low-light nighttime conditions constitutes a core bottleneck preventing all-day applications for UAV-based single object tracking. Existing image enhancement methods often struggle to distinguish between target and background regions, which can easily lead to amplified background noise or compromise target features. To overcome this limitation, we propose TAE, a target-aware low-light enhancement framework tailored for nighttime object tracking. Guided explicitly by weak supervisory signals from tracking bounding boxes, the framework performs region-aware enhancement to ensure operations focus on the target area. It further adopts an adaptive RGB multi-curve fusion mechanism to achieve refined modeling and adaptive adjustment across different regions. To facilitate research in this domain, we also contribute DarkSOT, a new benchmark for nighttime UAV tracking, comprising 268 sequences across 9 target categories. Experimental results on the DarkSOT and UAVDark135 demonstrate that TAE significantly improves tracking performance in low-light nighttime scenarios, exhibiting strong robustness and generalization. The DarkSOT dataset is available at https://github.com/Fu0511/DarkSOT-Dataset.

Qian Ma, Haitao Mao, Jingzhe Liu et al.

Self-supervised learning~(SSL) is essential to obtain foundation models in NLP and CV domains via effectively leveraging knowledge in large-scale unlabeled data. The reason for its success is that a suitable SSL design can help the model to follow the neural scaling law, i.e., the performance consistently improves with increasing model and dataset sizes. However, it remains a mystery whether existing SSL in the graph domain can follow the scaling behavior toward building Graph Foundation Models~(GFMs) with large-scale pre-training. In this study, we examine whether existing graph SSL techniques can follow the neural scaling behavior with the potential to serve as the essential component for GFMs. Our benchmark includes comprehensive SSL technique implementations with analysis conducted on both the conventional SSL setting and many new settings adopted in other domains. Surprisingly, despite the SSL loss continuously decreasing, no existing graph SSL techniques follow the neural scaling behavior on the downstream performance. The model performance only merely fluctuates on different data scales and model scales. Instead of the scales, the key factors influencing the performance are the choices of model architecture and pretext task design. This paper examines existing SSL techniques for the feasibility of Graph SSL techniques in developing GFMs and opens a new direction for graph SSL design with the new evaluation prototype. Our code implementation is available online to ease reproducibility on https://github.com/GraphSSLScaling/GraphSSLScaling.

Huan Zhang, Yizhan Li, Wenhao Huang et al. · mila

The convergence of artificial intelligence and materials science presents a transformative opportunity, but achieving true acceleration in discovery requires moving beyond task-isolated, fine-tuned models toward agentic systems that plan, act, and learn across the full discovery loop. This survey advances a unique pipeline-centric view that spans from corpus curation and pretraining, through domain adaptation and instruction tuning, to goal-conditioned agents interfacing with simulation and experimental platforms. Unlike prior reviews, we treat the entire process as an end-to-end system to be optimized for tangible discovery outcomes rather than proxy benchmarks. This perspective allows us to trace how upstream design choices-such as data curation and training objectives-can be aligned with downstream experimental success through effective credit assignment. To bridge communities and establish a shared frame of reference, we first present an integrated lens that aligns terminology, evaluation, and workflow stages across AI and materials science. We then analyze the field through two focused lenses: From the AI perspective, the survey details LLM strengths in pattern recognition, predictive analytics, and natural language processing for literature mining, materials characterization, and property prediction; from the materials science perspective, it highlights applications in materials design, process optimization, and the acceleration of computational workflows via integration with external tools (e.g., DFT, robotic labs). Finally, we contrast passive, reactive approaches with agentic design, cataloging current contributions while motivating systems that pursue long-horizon goals with autonomy, memory, and tool use. This survey charts a practical roadmap towards autonomous, safety-aware LLM agents aimed at discovering novel and useful materials.

Yu Song, Santiago Miret, Huan Zhang et al.

We propose an instruction-based process for trustworthy data curation in materials science (MatSci-Instruct), which we then apply to finetune a LLaMa-based language model targeted for materials science (HoneyBee). MatSci-Instruct helps alleviate the scarcity of relevant, high-quality materials science textual data available in the open literature, and HoneyBee is the first billion-parameter language model specialized to materials science. In MatSci-Instruct we improve the trustworthiness of generated data by prompting multiple commercially available large language models for generation with an Instructor module (e.g. Chat-GPT) and verification from an independent Verifier module (e.g. Claude). Using MatSci-Instruct, we construct a dataset of multiple tasks and measure the quality of our dataset along multiple dimensions, including accuracy against known facts, relevance to materials science, as well as completeness and reasonableness of the data. Moreover, we iteratively generate more targeted instructions and instruction-data in a finetuning-evaluation-feedback loop leading to progressively better performance for our finetuned HoneyBee models. Our evaluation on the MatSci-NLP benchmark shows HoneyBee's outperformance of existing language models on materials science tasks and iterative improvement in successive stages of instruction-data refinement. We study the quality of HoneyBee's language modeling through automatic evaluation and analyze case studies to further understand the model's capabilities and limitations. Our code and relevant datasets are publicly available at \url{https://github.com/BangLab-UdeM-Mila/NLP4MatSci-HoneyBee}.

Yu Song, Donglin Wang

Graph Neural Networks (GNNs) are state-of-the-art models for performing prediction tasks on graphs. While existing GNNs have shown great performance on various tasks related to graphs, little attention has been paid to the scenario where out-of-distribution (OOD) nodes exist in the graph during training and inference. Borrowing the concept from CV and NLP, we define OOD nodes as nodes with labels unseen from the training set. Since a lot of networks are automatically constructed by programs, real-world graphs are often noisy and may contain nodes from unknown distributions. In this work, we define the problem of graph learning with out-of-distribution nodes. Specifically, we aim to accomplish two tasks: 1) detect nodes which do not belong to the known distribution and 2) classify the remaining nodes to be one of the known classes. We demonstrate that the connection patterns in graphs are informative for outlier detection, and propose Out-of-Distribution Graph Attention Network (OODGAT), a novel GNN model which explicitly models the interaction between different kinds of nodes and separate inliers from outliers during feature propagation. Extensive experiments show that OODGAT outperforms existing outlier detection methods by a large margin, while being better or comparable in terms of in-distribution classification.

Yulei Ye, Wenhao Li, Zhong Wen et al.

Despite the rapid deployment of LLMs into classrooms, validating educational AI remains uniquely intractable: interventions act on developing learners whose cognitive and social trajectories are irreversibly shaped, while real-world trials are slow, ethically constrained, and institutionally locked. LLM-based educational simulators have emerged as a potential remedy, but many still collapse learning into persona-conditioned role-play and, when optimized only to reproduce existing classrooms, can structurally penalize the institutional novelty that pedagogical reform requires. In this work, we introduce AgentSchool, an LLM-driven multi-agent simulator that models learning as state transition rather than prompted behavior. AgentSchool couples cognitively growable student agents -- equipped with weighted subject knowledge graphs, thinking-workflow pools, and explicit misconceptions -- with adaptive teacher agents that plan, scaffold, and reflect along the Zone of Proximal Development, embedded in a configurable scenery generator that situates instruction within both formal and informal learning fields, and a multi-scale simulator that decouples interaction scale, temporal granularity, and simulation duration. Experiments show that structured student agents produce more differentiated mastery and misconception traces than a baseline simulator, while teacher-agent comparisons show backbone-dependent patterns consistent with ZPD-informed adaptation. Further, AgentSchool generates plausible traces of peripheral participation, clique formation, aggressor-induced cohesion, and opinion-leader emergence consistent with classroom social theories. Beyond its role as an educational research instrument, AgentSchool frames education as a socially meaningful testbed for long-horizon memory, multi-agent coordination, and future institutional reasoning under organizational pressure.

Yu Song, Madhav V. Chitturi, David A. Noyce

Crash sequence analysis has been shown in prior studies to be useful for characterizing crashes and identifying safety countermeasures. Sequence analysis is highly domain-specific, but its various techniques have not been evaluated for adaptation to crash sequences. This paper evaluates the impact of encoding and dissimilarity measures on crash sequence analysis and clustering. Sequence data of interstate highway, single-vehicle crashes in the United States, from 2016-2018, were studied. Two encoding schemes and five optimal matching based dissimilarity measures were compared by evaluating the sequence clustering results. The five dissimilarity measures were categorized into two groups based on correlations between dissimilarity matrices. The optimal dissimilarity measure and encoding scheme were identified based on the agreements with a benchmark crash categorization. The transition-rate-based, localized optimal matching dissimilarity and consolidated encoding scheme had the highest agreement with the benchmark. Evaluation results indicate that the selection of dissimilarity measure and encoding scheme determines the results of sequence clustering and crash characterization. A dissimilarity measure that considers the relationships between events and domain context tends to perform well in crash sequence clustering. An encoding scheme that consolidates similar events naturally takes domain context into consideration.

Meng'en Qin, Yu Song, Quanling Zhao et al.

Learning multi-scale representations is the common strategy to tackle object scale variation in dense prediction tasks. Although existing feature pyramid networks have greatly advanced visual recognition, inherent design defects inhibit them from capturing discriminative features and recognizing small objects. In this work, we propose Asymptotic Content-Aware Pyramid Attention Network (A3-FPN), to augment multi-scale feature representation via the asymptotically disentangled framework and content-aware attention modules. Specifically, A3-FPN employs a horizontally-spread column network that enables asymptotically global feature interaction and disentangles each level from all hierarchical representations. In feature fusion, it collects supplementary content from the adjacent level to generate position-wise offsets and weights for context-aware resampling, and learns deep context reweights to improve intra-category similarity. In feature reassembly, it further strengthens intra-scale discriminative feature learning and reassembles redundant features based on information content and spatial variation of feature maps. Extensive experiments on MS COCO, VisDrone2019-DET and Cityscapes demonstrate that A3-FPN can be easily integrated into state-of-the-art CNN and Transformer-based architectures, yielding remarkable performance gains. Notably, when paired with OneFormer and Swin-L backbone, A3-FPN achieves 49.6 mask AP on MS COCO and 85.6 mIoU on Cityscapes. Codes are available at https://github.com/mason-ching/A3-FPN.

Peng Jia, Ruiqi Sun, Nan Li et al.

Strong lensing in galaxy clusters probes properties of dense cores of dark matter halos in mass, studies the distant universe at flux levels and spatial resolutions otherwise unavailable, and constrains cosmological models independently. The next-generation large scale sky imaging surveys are expected to discover thousands of cluster-scale strong lenses, which would lead to unprecedented opportunities for applying cluster-scale strong lenses to solve astrophysical and cosmological problems. However, the large dataset challenges astronomers to identify and extract strong lensing signals, particularly strongly lensed arcs, because of their complexity and variety. Hence, we propose a framework to detect cluster-scale strongly lensed arcs, which contains a transformer-based detection algorithm and an image simulation algorithm. We embed prior information of strongly lensed arcs at cluster-scale into the training data through simulation and then train the detection algorithm with simulated images. We use the trained transformer to detect strongly lensed arcs from simulated and real data. Results show that our approach could achieve 99.63 % accuracy rate, 90.32 % recall rate, 85.37 % precision rate and 0.23 % false positive rate in detection of strongly lensed arcs from simulated images and could detect almost all strongly lensed arcs in real observation images. Besides, with an interpretation method, we have shown that our method could identify important information embedded in simulated data. Next step, to test the reliability and usability of our approach, we will apply it to available observations (e.g., DESI Legacy Imaging Surveys) and simulated data of upcoming large-scale sky surveys, such as the Euclid and the CSST.

Yu Song, Liyuan Han, Bo Xu et al.

Brain-computer interfaces (BCIs) are an advanced fusion of neuroscience and artificial intelligence, requiring stable and long-term decoding of neural signals. Spiking Neural Networks (SNNs), with their neuronal dynamics and spike-based signal processing, are inherently well-suited for this task. This paper presents a novel approach utilizing a Multiscale Fusion enhanced Spiking Neural Network (MFSNN). The MFSNN emulates the parallel processing and multiscale feature fusion seen in human visual perception to enable real-time, efficient, and energy-conserving neural signal decoding. Initially, the MFSNN employs temporal convolutional networks and channel attention mechanisms to extract spatiotemporal features from raw data. It then enhances decoding performance by integrating these features through skip connections. Additionally, the MFSNN improves generalizability and robustness in cross-day signal decoding through mini-batch supervised generalization learning. In two benchmark invasive BCI paradigms, including the single-hand grasp-and-touch and center-and-out reach tasks, the MFSNN surpasses traditional artificial neural network methods, such as MLP and GRU, in both accuracy and computational efficiency. Moreover, the MFSNN's multiscale feature fusion framework is well-suited for the implementation on neuromorphic chips, offering an energy-efficient solution for online decoding of invasive BCI signals.

Jiahua Dong, Guohua Cheng, Yue Zhang et al.

Multi-organ segmentation, which identifies and separates different organs in medical images, is a fundamental task in medical image analysis. Recently, the immense success of deep learning motivated its wide adoption in multi-organ segmentation tasks. However, due to expensive labor costs and expertise, the availability of multi-organ annotations is usually limited and hence poses a challenge in obtaining sufficient training data for deep learning-based methods. In this paper, we aim to address this issue by combining off-the-shelf single-organ segmentation models to develop a multi-organ segmentation model on the target dataset, which helps get rid of the dependence on annotated data for multi-organ segmentation. To this end, we propose a novel dual-stage method that consists of a Model Adaptation stage and a Model Ensemble stage. The first stage enhances the generalization of each off-the-shelf segmentation model on the target domain, while the second stage distills and integrates knowledge from multiple adapted single-organ segmentation models. Extensive experiments on four abdomen datasets demonstrate that our proposed method can effectively leverage off-the-shelf single-organ segmentation models to obtain a tailored model for multi-organ segmentation with high accuracy.

Huan Zhang, Yu Song, Ziyu Hou et al.

The emergence of specialized large language models (LLMs) has shown promise in addressing complex tasks for materials science. Many LLMs, however, often struggle with distinct complexities of material science tasks, such as materials science computational tasks, and often rely heavily on outdated implicit knowledge, leading to inaccuracies and hallucinations. To address these challenges, we introduce HoneyComb, the first LLM-based agent system specifically designed for materials science. HoneyComb leverages a novel, high-quality materials science knowledge base (MatSciKB) and a sophisticated tool hub (ToolHub) to enhance its reasoning and computational capabilities tailored to materials science. MatSciKB is a curated, structured knowledge collection based on reliable literature, while ToolHub employs an Inductive Tool Construction method to generate, decompose, and refine API tools for materials science. Additionally, HoneyComb leverages a retriever module that adaptively selects the appropriate knowledge source or tools for specific tasks, thereby ensuring accuracy and relevance. Our results demonstrate that HoneyComb significantly outperforms baseline models across various tasks in materials science, effectively bridging the gap between current LLM capabilities and the specialized needs of this domain. Furthermore, our adaptable framework can be easily extended to other scientific domains, highlighting its potential for broad applicability in advancing scientific research and applications.

Peng Jia, Jiameng Lv, Runyu Ning et al.

Large-scale astronomical surveys can capture numerous images of celestial objects, including galaxies and nebulae. Analysing and processing these images can reveal intricate internal structures of these objects, allowing researchers to conduct comprehensive studies on their morphology, evolution, and physical properties. However, varying noise levels and point spread functions can hamper the accuracy and efficiency of information extraction from these images. To mitigate these effects, we propose a novel image restoration algorithm that connects a deep learning-based restoration algorithm with a high-fidelity telescope simulator. During the training stage, the simulator generates images with different levels of blur and noise to train the neural network based on the quality of restored images. After training, the neural network can directly restore images obtained by the telescope, as represented by the simulator. We have tested the algorithm using real and simulated observation data and have found that it effectively enhances fine structures in blurry images and increases the quality of observation images. This algorithm can be applied to large-scale sky survey data, such as data obtained by LSST, Euclid, and CSST, to further improve the accuracy and efficiency of information extraction, promoting advances in the field of astronomical research.

Hao Sun, Yu Song, Jiaqing Liu et al.

Large-scale models have exhibited remarkable capabilities across diverse domains, including automated medical services and intelligent customer support. However, as most large models are trained on single-modality corpora, enabling them to effectively process and understand multimodal signals remains a significant challenge. Current research often focuses on designing task-specific or scenario-specific tuning strategies, which limits the scalability and versatility. To address this limitation, we propose a unified framework that concurrently handles multiple tasks and modalities. In this framework, all modalities and tasks are represented as unified tokens and trained using a single, consistent approach. To enable efficient multitask processing, we introduce a novel tuning strategy termed neural tuning, inspired by the concept of sparse distributed representation in the human brain, where only specific subsets of neurons are activated for each task. Furthermore, to advance research in multimodal and multitask learning, we present a new benchmark, MMUD, which includes samples annotated with multiple task labels spanning reasoning segmentation, referring segmentation, image captioning, and text-to-image generation. By applying neural tuning to pretrained large models on the MMUD benchmark, we demonstrate the ability to handle multiple tasks simultaneously in a streamlined and efficient manner. All models, code, and datasets will be released publicly upon publication, fostering further research and innovation in this field.

Quang Truong, Yu Song, Donald Loveland et al.

Link prediction is a core challenge in graph machine learning, demanding models that capture rich and complex topological dependencies. While Graph Neural Networks (GNNs) are the standard solution, state-of-the-art pipelines often rely on explicit structural heuristics or memory-intensive node embeddings -- approaches that struggle to generalize or scale to massive graphs. Emerging Graph Transformers (GTs) offer a potential alternative but often incur significant overhead due to complex structural encodings, hindering their applications to large-scale link prediction. We challenge these sophisticated paradigms with PENCIL, an encoder-only plain Transformer that replaces hand-crafted priors with attention over sampled local subgraphs, retaining the scalability and hardware efficiency of standard Transformers. Through experimental and theoretical analysis, we show that PENCIL extracts richer structural signals than GNNs, implicitly generalizing a broad class of heuristics and subgraph-based expressivity. Empirically, PENCIL outperforms heuristic-informed GNNs and is far more parameter-efficient than ID-embedding--based alternatives, while remaining competitive across diverse benchmarks -- even without node features. Our results challenge the prevailing reliance on complex engineering techniques, demonstrating that simple design choices are potentially sufficient to achieve the same capabilities.

Xueyang Li, Jiahao Li, Yu Song et al.

The advent of Computer-Aided Design (CAD) generative modeling will significantly transform the design of industrial products. The recent research endeavor has extended into the realm of Large Language Models (LLMs). In contrast to fine-tuning methods, training-free approaches typically utilize the advanced closed-source LLMs, thereby offering enhanced flexibility and efficiency in the development of AI agents for generating CAD parametric models. However, the substantial cost and limitations of local deployment of the top-tier closed-source LLMs pose challenges in practical applications. The Seek-CAD is the pioneer exploration of locally deployed open-source inference LLM DeepSeek-R1 for CAD parametric model generation with a training-free methodology. This study is the first investigation to incorporate both visual and Chain-of-Thought (CoT) feedback within the self-refinement mechanism for generating CAD models. Specifically, the initial generated parametric CAD model is rendered into a sequence of step-wise perspective images, which are subsequently processed by a Vision Language Model (VLM) alongside the corresponding CoTs derived from DeepSeek-R1 to assess the CAD model generation. Then, the feedback is utilized by DeepSeek-R1 to refine the initial generated model for the next round of generation. Moreover, we present an innovative 3D CAD model dataset structured around the SSR (Sketch, Sketch-based feature, and Refinements) triple design paradigm. This dataset encompasses a wide range of CAD commands, thereby aligning effectively with industrial application requirements and proving suitable for the generation of LLMs. Extensive experiments validate the effectiveness of Seek-CAD under various metrics.

Yu Song, Zhigang Hua, Yan Xie et al.

Self-supervised learning (SSL) has shown great promise in graph representation learning. However, most existing graph SSL methods are developed and evaluated under a single-dataset setting, leaving their cross-dataset transferability largely unexplored and limiting their ability to leverage knowledge transfer and large-scale pretraining, factors that are critical for developing generalized intelligence beyond fitting training data. To address this gap and advance foundation model research for graphs, we present GSTBench, the first systematic benchmark for evaluating the transferability of graph SSL methods. We conduct large-scale pretraining on ogbn-papers100M and evaluate five representative SSL methods across a diverse set of target graphs. Our standardized experimental setup decouples confounding factors such as model architecture, dataset characteristics, and adaptation protocols, enabling rigorous comparisons focused solely on pretraining objectives. Surprisingly, we observe that most graph SSL methods struggle to generalize, with some performing worse than random initialization. In contrast, GraphMAE, a masked autoencoder approach, consistently improves transfer performance. We analyze the underlying factors that drive these differences and offer insights to guide future research on transferable graph SSL, laying a solid foundation for the "pretrain-then-transfer" paradigm in graph learning. Our code is available at https://github.com/SongYYYY/GSTBench.

Shou'ang Wei, Xinyun Wang, Shuzhen Bi et al.

The emergence of Large Language Models (LLMs) presents transformative opportunities for education, generating numerous novel application scenarios. However, significant challenges remain: evaluation metrics vary substantially across different educational scenarios, while many emerging scenarios lack appropriate assessment metrics. Current benchmarks predominantly measure general intelligence rather than pedagogical capabilities. To address this gap, we introduce ELMES, an open-source automated evaluation framework specifically designed for assessing LLMs in educational settings. ELMES features a modular architecture that enables researchers to create dynamic, multi-agent dialogues through simple configuration files, facilitating flexible scenario design without requiring extensive programming expertise. The framework incorporates a hybrid evaluation engine that objectively quantifies traditionally subjective pedagogical metrics using an LLM-as-a-Judge methodology. We conduct systematic benchmarking of state-of-the-art LLMs across four critical educational scenarios: Knowledge Point Explanation, Guided Problem-Solving Teaching, Interdisciplinary Lesson Plan Generation, and Contextualized Question Generation, employing fine-grained metrics developed in collaboration with education specialists. Our results demonstrate distinct capability distributions among models, revealing context-specific strengths and limitations. ELMES provides educators and researchers with an accessible evaluation framework that significantly reduces adaptation barriers for diverse educational applications while advancing the practical implementation of LLMs in pedagogy. The framework is publicly available at \emph{https://github.com/sii-research/elmes.git}.

Zhikai Chen, Haitao Mao, Jingzhe Liu et al.

Given the ubiquity of graph data and its applications in diverse domains, building a Graph Foundation Model (GFM) that can work well across different graphs and tasks with a unified backbone has recently garnered significant interests. A major obstacle to achieving this goal stems from the fact that graphs from different domains often exhibit diverse node features. Inspired by multi-modal models that align different modalities with natural language, the text has recently been adopted to provide a unified feature space for diverse graphs. Despite the great potential of these text-space GFMs, current research in this field is hampered by two problems. First, the absence of a comprehensive benchmark with unified problem settings hinders a clear understanding of the comparative effectiveness and practical value of different text-space GFMs. Second, there is a lack of sufficient datasets to thoroughly explore the methods' full potential and verify their effectiveness across diverse settings. To address these issues, we conduct a comprehensive benchmark providing novel text-space datasets and comprehensive evaluation under unified problem settings. Empirical results provide new insights and inspire future research directions. Our code and data are publicly available from \url{https://github.com/CurryTang/TSGFM}.

Yu Song, Santiago Miret, Bang Liu

We present MatSci-NLP, a natural language benchmark for evaluating the performance of natural language processing (NLP) models on materials science text. We construct the benchmark from publicly available materials science text data to encompass seven different NLP tasks, including conventional NLP tasks like named entity recognition and relation classification, as well as NLP tasks specific to materials science, such as synthesis action retrieval which relates to creating synthesis procedures for materials. We study various BERT-based models pretrained on different scientific text corpora on MatSci-NLP to understand the impact of pretraining strategies on understanding materials science text. Given the scarcity of high-quality annotated data in the materials science domain, we perform our fine-tuning experiments with limited training data to encourage the generalize across MatSci-NLP tasks. Our experiments in this low-resource training setting show that language models pretrained on scientific text outperform BERT trained on general text. MatBERT, a model pretrained specifically on materials science journals, generally performs best for most tasks. Moreover, we propose a unified text-to-schema for multitask learning on \benchmark and compare its performance with traditional fine-tuning methods. In our analysis of different training methods, we find that our proposed text-to-schema methods inspired by question-answering consistently outperform single and multitask NLP fine-tuning methods. The code and datasets are publicly available at \url{https://github.com/BangLab-UdeM-Mila/NLP4MatSci-ACL23}.

Houping Yue, Zixiang Di, Mei Jiang et al.

While Large Language Models (LLMs) are reshaping the paradigm of AI for Social Science (AI4SS), rigorously evaluating their capabilities in scholarly writing remains a major challenge. Existing benchmarks largely emphasize single-shot, monolithic generation and thus lack the fine-grained assessments required to reflect complex academic research workflows. To fill this gap, we introduce EduResearchBench, the first comprehensive evaluation platform dedicated to educational academic writing. EduResearchBench is built upon our Hierarchical Atomic Task Decomposition (HATD) framework, which decomposes an end-to-end research workflow into six specialized research modules (e.g., Quantitative Analysis, Qualitative Research, and Policy Research) spanning 24 fine-grained atomic tasks. This taxonomy enables an automated evaluation pipeline that mitigates a key limitation of holistic scoring, where aggregate scores often obscure specific capability bottlenecks, and instead provides fine-grained, diagnostic feedback on concrete deficiencies. Moreover, recognizing the high cognitive load inherent in scholarly writing, we propose a curriculum learning strategy that progressively builds competence from foundational skills to complex methodological reasoning and argumentation. Leveraging 55K raw academic samples, we curate 11K high-quality instruction pairs to train EduWrite, a specialized educational scholarly writing model. Experiments show that EduWrite (30B) substantially outperforms larger general-purpose models (72B) on multiple core metrics, demonstrating that in vertical domains, data quality density and hierarchically staged training curricula are more decisive than parameter scale.

Wenqi Fan, Shijie Wang, Jiani Huang et al.

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a cornerstone in Graph Machine Learning (Graph ML), facilitating the representation and processing of graph structures. Recently, LLMs have demonstrated unprecedented capabilities in language tasks and are widely adopted in a variety of applications such as computer vision and recommender systems. This remarkable success has also attracted interest in applying LLMs to the graph domain. Increasing efforts have been made to explore the potential of LLMs in advancing Graph ML's generalization, transferability, and few-shot learning ability. Meanwhile, graphs, especially knowledge graphs, are rich in reliable factual knowledge, which can be utilized to enhance the reasoning capabilities of LLMs and potentially alleviate their limitations such as hallucinations and the lack of explainability. Given the rapid progress of this research direction, a systematic review summarizing the latest advancements for Graph ML in the era of LLMs is necessary to provide an in-depth understanding to researchers and practitioners. Therefore, in this survey, we first review the recent developments in Graph ML. We then explore how LLMs can be utilized to enhance the quality of graph features, alleviate the reliance on labeled data, and address challenges such as graph heterogeneity and out-of-distribution (OOD) generalization. Afterward, we delve into how graphs can enhance LLMs, highlighting their abilities to enhance LLM pre-training and inference. Furthermore, we investigate various applications and discuss the potential future directions in this promising field.

Mingxiang Fu, Yu Song, Jiameng Lv et al.

The exponential growth of astronomical datasets provides an unprecedented opportunity for humans to gain insight into the Universe. However, effectively analyzing this vast amount of data poses a significant challenge. Astronomers are turning to deep learning techniques to address this, but the methods are limited by their specific training sets, leading to considerable duplicate workloads too. Hence, as an example to present how to overcome the issue, we built a framework for general analysis of galaxy images, based on a large vision model (LVM) plus downstream tasks (DST), including galaxy morphological classification, image restoration, object detection, parameter extraction, and more. Considering the low signal-to-noise ratio of galaxy images and the imbalanced distribution of galaxy categories, we have incorporated a Human-in-the-loop (HITL) module into our large vision model, which leverages human knowledge to enhance the reliability and interpretability of processing galaxy images interactively. The proposed framework exhibits notable few-shot learning capabilities and versatile adaptability to all the abovementioned tasks on galaxy images in the DESI legacy imaging surveys. Expressly, for object detection, trained by 1000 data points, our DST upon the LVM achieves an accuracy of 96.7%, while ResNet50 plus Mask R-CNN gives an accuracy of 93.1%; for morphology classification, to obtain AUC ~0.9, LVM plus DST and HITL only requests 1/50 training sets compared to ResNet18. Expectedly, multimodal data can be integrated similarly, which opens up possibilities for conducting joint analyses with datasets spanning diverse domains in the era of multi-message astronomy.

Jingzhe Liu, Zhigang Hua, Yan Xie et al.

Temporal Graph Neural Networks (TGNNs) have gained growing attention for modeling and predicting structures in temporal graphs. However, existing TGNNs primarily focus on pairwise interactions while overlooking higher-order structures that are integral to link formation and evolution in real-world temporal graphs. Meanwhile, these models often suffer from efficiency bottlenecks, further limiting their expressive power. To tackle these challenges, we propose a Higher-order structure Temporal Graph Neural Network, which incorporates hypergraph representations into temporal graph learning. In particular, we develop an algorithm to identify the underlying higher-order structures, enhancing the model's ability to capture the group interactions. Furthermore, by aggregating multiple edge features into hyperedge representations, HTGN effectively reduces memory cost during training. We theoretically demonstrate the enhanced expressiveness of our approach and validate its effectiveness and efficiency through extensive experiments on various real-world temporal graphs. Experimental results show that HTGN achieves superior performance on dynamic link prediction while reducing memory costs by up to 50\% compared to existing methods.

Yu Song, Zhigang Hua, Harry Shomer et al.

Link Prediction (LP) is a critical task in graph machine learning. While Graph Neural Networks (GNNs) have significantly advanced LP performance recently, existing methods face key challenges including limited supervision from sparse connectivity, sensitivity to initialization, and poor generalization under distribution shifts. We explore pretraining as a solution to address these challenges. Unlike node classification, LP is inherently a pairwise task, which requires the integration of both node- and edge-level information. In this work, we present the first systematic study on the transferability of these distinct modules and propose a late fusion strategy to effectively combine their outputs for improved performance. To handle the diversity of pretraining data and avoid negative transfer, we introduce a Mixture-of-Experts (MoE) framework that captures distinct patterns in separate experts, facilitating seamless application of the pretrained model on diverse downstream datasets. For fast adaptation, we develop a parameter-efficient tuning strategy that allows the pretrained model to adapt to unseen datasets with minimal computational overhead. Experiments on 16 datasets across two domains demonstrate the effectiveness of our approach, achieving state-of-the-art performance on low-resource link prediction while obtaining competitive results compared to end-to-end trained methods, with over 10,000x lower computational overhead.

He Zou, Meng'en Qin, Yu Song et al.

In the realm of neural network models, the perpetual challenge remains in retaining task-relevant information while effectively discarding redundant data during propagation. In this paper, we introduce IB-AdCSCNet, a deep learning model grounded in information bottleneck theory. IB-AdCSCNet seamlessly integrates the information bottleneck trade-off strategy into deep networks by dynamically adjusting the trade-off hyperparameter $λ$ through gradient descent, updating it within the FISTA(Fast Iterative Shrinkage-Thresholding Algorithm ) framework. By optimizing the compressive excitation loss function induced by the information bottleneck principle, IB-AdCSCNet achieves an optimal balance between compression and fitting at a global level, approximating the globally optimal representation feature. This information bottleneck trade-off strategy driven by downstream tasks not only helps to learn effective features of the data, but also improves the generalization of the model. This study's contribution lies in presenting a model with consistent performance and offering a fresh perspective on merging deep learning with sparse representation theory, grounded in the information bottleneck concept. Experimental results on CIFAR-10 and CIFAR-100 datasets demonstrate that IB-AdCSCNet not only matches the performance of deep residual convolutional networks but also outperforms them when handling corrupted data. Through the inference of the IB trade-off, the model's robustness is notably enhanced.

Yu Song, Tatsuaki Goh, Yinhao Li et al.

Arabidopsis is a widely used model plant to gain basic knowledge on plant physiology and development. Live imaging is an important technique to visualize and quantify elemental processes in plant development. To uncover novel theories underlying plant growth and cell division, accurate cell tracking on live imaging is of utmost importance. The commonly used cell tracking software, TrackMate, adopts tracking-by-detection fashion, which applies Laplacian of Gaussian (LoG) for blob detection, and Linear Assignment Problem (LAP) tracker for tracking. However, they do not perform sufficiently when cells are densely arranged. To alleviate the problems mentioned above, we propose an accurate tracking method based on Genetic algorithm (GA) using knowledge of Arabidopsis root cellular patterns and spatial relationship among volumes. Our method can be described as a coarse-to-fine method, in which we first conducted relatively easy line-level tracking of cell nuclei, then performed complicated nuclear tracking based on known linear arrangement of cell files and their spatial relationship between nuclei. Our method has been evaluated on a long-time live imaging dataset of Arabidopsis root tips, and with minor manual rectification, it accurately tracks nuclei. To the best of our knowledge, this research represents the first successful attempt to address a long-standing problem in the field of time-lapse microscopy in the root meristem by proposing an accurate tracking method for Arabidopsis root nuclei.

Yu Song, Haitao Mao, Jiachen Xiao et al.

Pretraining plays a pivotal role in acquiring generalized knowledge from large-scale data, achieving remarkable successes as evidenced by large models in CV and NLP. However, progress in the graph domain remains limited due to fundamental challenges such as feature heterogeneity and structural heterogeneity. Recently, increasing efforts have been made to enhance node feature quality with Large Language Models (LLMs) on text-attributed graphs (TAGs), demonstrating superiority to traditional bag-of-words or word2vec techniques. These high-quality node features reduce the previously critical role of graph structure, resulting in a modest performance gap between Graph Neural Networks (GNNs) and structure-agnostic Multi-Layer Perceptrons (MLPs). Motivated by this, we introduce a feature-centric pretraining perspective by treating graph structure as a prior and leveraging the rich, unified feature space to learn refined interaction patterns that generalizes across graphs. Our framework, Graph Sequence Pretraining with Transformer (GSPT), samples node contexts through random walks and employs masked feature reconstruction to capture pairwise proximity in the LLM-unified feature space using a standard Transformer. By utilizing unified text representations rather than varying structures, our framework achieves significantly better transferability among graphs within the same domain. GSPT can be easily adapted to both node classification and link prediction, demonstrating promising empirical success on various datasets.

Hao Sun, Yu Song

Large models have demonstrated exceptional generalization capabilities in computer vision and natural language processing. Recent efforts have focused on enhancing these models with multimodal processing abilities. However, addressing the challenges posed by scenarios where one modality is absent remains a significant hurdle. In response to this issue, we propose a robust latent representation tuning method for large models. Specifically, our approach introduces a modality latent translation module to maximize the correlation between modalities, resulting in a robust representation. Following this, a newly designed fusion module is employed to facilitate information interaction between the modalities. Within this framework, common semantics are refined during training, and robust performance is achieved even in the absence of one modality. Importantly, our method maintains the frozen state of the image and text foundation models to preserve their capabilities acquired through large-scale pretraining. We conduct experiments on several public datasets, and the results underscore the effectiveness of our proposed method.

Zenglin Shi, Pei Liu, Tong Su et al.

Continual learning, involving sequential training on diverse tasks, often faces catastrophic forgetting. While knowledge distillation-based approaches exhibit notable success in preventing forgetting, we pinpoint a limitation in their ability to distill the cumulative knowledge of all the previous tasks. To remedy this, we propose Dense Knowledge Distillation (DKD). DKD uses a task pool to track the model's capabilities. It partitions the output logits of the model into dense groups, each corresponding to a task in the task pool. It then distills all tasks' knowledge using all groups. However, using all the groups can be computationally expensive, we also suggest random group selection in each optimization step. Moreover, we propose an adaptive weighting scheme, which balances the learning of new classes and the retention of old classes, based on the count and similarity of the classes. Our DKD outperforms recent state-of-the-art baselines across diverse benchmarks and scenarios. Empirical analysis underscores DKD's ability to enhance model stability, promote flatter minima for improved generalization, and remains robust across various memory budgets and task orders. Moreover, it seamlessly integrates with other CL methods to boost performance and proves versatile in offline scenarios like model compression.

Peng Jia, Yu Song, Jiameng Lv et al.

With the growing amount of astronomical data, there is an increasing need for automated data processing pipelines, which can extract scientific information from observation data without human interventions. A critical aspect of these pipelines is the image quality evaluation and masking algorithm, which evaluates image qualities based on various factors such as cloud coverage, sky brightness, scattering light from the optical system, point spread function size and shape, and read-out noise. Occasionally, the algorithm requires masking of areas severely affected by noise. However, the algorithm often necessitates significant human interventions, reducing data processing efficiency. In this study, we present a deep learning based image quality evaluation algorithm that uses an autoencoder to learn features of high quality astronomical images. The trained autoencoder enables automatic evaluation of image quality and masking of noise affected areas. We have evaluated the performance of our algorithm using two test cases: images with point spread functions of varying full width half magnitude, and images with complex backgrounds. In the first scenario, our algorithm could effectively identify variations of the point spread functions, which can provide valuable reference information for photometry. In the second scenario, our method could successfully mask regions affected by complex regions, which could significantly increase the photometry accuracy. Our algorithm can be employed to automatically evaluate image quality obtained by different sky surveying projects, further increasing the speed and robustness of data processing pipelines.

Yu Du, Yu Song, Ce Guo et al.

Due to their complex spatial structure and diverse geometric features, achieving high-precision and robust point cloud registration for complex Die Castings has been a significant challenge in the die-casting industry. Existing point cloud registration methods primarily optimize network models using well-established high-quality datasets, often neglecting practical application in real scenarios. To address this gap, this paper proposes a high-precision adaptive registration method called Multiscale Efficient Deep Closest Point (MEDPNet) and introduces a die-casting point cloud dataset, DieCastCloud, specifically designed to tackle the challenges of point cloud registration in the die-casting industry. The MEDPNet method performs coarse die-casting point cloud data registration using the Efficient-DCP method, followed by precision registration using the Multiscale feature fusion dual-channel registration (MDR) method. We enhance the modeling capability and computational efficiency of the model by replacing the attention mechanism of the Transformer in DCP with Efficient Attention and implementing a collaborative scale mechanism through the combination of serial and parallel blocks. Additionally, we propose the MDR method, which utilizes multilayer perceptrons (MLP), Normal Distributions Transform (NDT), and Iterative Closest Point (ICP) to achieve learnable adaptive fusion, enabling high-precision, scalable, and noise-resistant global point cloud registration. Our proposed method demonstrates excellent performance compared to state-of-the-art geometric and learning-based registration methods when applied to complex die-casting point cloud data.

Zhuolin Wu, Li Wang, Fangsheng Huang et al.

Online meal delivery is undergoing explosive growth, as this service is becoming increasingly popular. A meal delivery platform aims to provide excellent and stable services for customers and restaurants. However, in reality, several hundred thousand orders are canceled per day in the Meituan meal delivery platform since they are not accepted by the crowd soucing drivers. The cancellation of the orders is incredibly detrimental to the customer's repurchase rate and the reputation of the Meituan meal delivery platform. To solve this problem, a certain amount of specific funds is provided by Meituan's business managers to encourage the crowdsourcing drivers to accept more orders. To make better use of the funds, in this work, we propose a framework to deal with the multi-stage bonus allocation problem for a meal delivery platform. The objective of this framework is to maximize the number of accepted orders within a limited bonus budget. This framework consists of a semi-black-box acceptance probability model, a Lagrangian dual-based dynamic programming algorithm, and an online allocation algorithm. The semi-black-box acceptance probability model is employed to forecast the relationship between the bonus allocated to order and its acceptance probability, the Lagrangian dual-based dynamic programming algorithm aims to calculate the empirical Lagrangian multiplier for each allocation stage offline based on the historical data set, and the online allocation algorithm uses the results attained in the offline part to calculate a proper delivery bonus for each order. To verify the effectiveness and efficiency of our framework, both offline experiments on a real-world data set and online A/B tests on the Meituan meal delivery platform are conducted. Our results show that using the proposed framework, the total order cancellations can be decreased by more than 25\% in reality.

Yu Song, Jianxun Lian, Shuai Sun et al.

User interest exploration is an important and challenging topic in recommender systems, which alleviates the closed-loop effects between recommendation models and user-item interactions. Contextual bandit (CB) algorithms strive to make a good trade-off between exploration and exploitation so that users' potential interests have chances to expose. However, classical CB algorithms can only be applied to a small, sampled item set (usually hundreds), which forces the typical applications in recommender systems limited to candidate post-ranking, homepage top item ranking, ad creative selection, or online model selection (A/B test). In this paper, we introduce two simple but effective hierarchical CB algorithms to make a classical CB model (such as LinUCB and Thompson Sampling) capable to explore users' interest in the entire item space without limiting it to a small item set. We first construct a hierarchy item tree via a bottom-up clustering algorithm to organize items in a coarse-to-fine manner. Then we propose a hierarchical CB (HCB) algorithm to explore users' interest in the hierarchy tree. HCB takes the exploration problem as a series of decision-making processes, where the goal is to find a path from the root to a leaf node, and the feedback will be back-propagated to all the nodes in the path. We further propose a progressive hierarchical CB (pHCB) algorithm, which progressively extends visible nodes which reach a confidence level for exploration, to avoid misleading actions on upper-level nodes in the sequential decision-making process. Extensive experiments on two public recommendation datasets demonstrate the effectiveness and flexibility of our methods.

Yu Song, Zilong Huang, Chuanyue Shen et al.

The standard petrography test method for measuring air voids in concrete (ASTM C457) requires a meticulous and long examination of sample phase composition under a stereomicroscope. The high expertise and specialized equipment discourage this test for routine concrete quality control. Though the task can be alleviated with the aid of color-based image segmentation, additional surface color treatment is required. Recently, deep learning algorithms using convolutional neural networks (CNN) have achieved unprecedented segmentation performance on image testing benchmarks. In this study, we investigated the feasibility of using CNN to conduct concrete segmentation without the use of color treatment. The CNN demonstrated a strong potential to process a wide range of concretes, including those not involved in model training. The experimental results showed that CNN outperforms the color-based segmentation by a considerable margin, and has comparable accuracy to human experts. Furthermore, the segmentation time is reduced to mere seconds.

Boya Ouyang, Yuhai Li, Yu Song et al.

Despite enormous efforts over the last decades to establish the relationship between concrete proportioning and strength, a robust knowledge-based model for accurate concrete strength predictions is still lacking. As an alternative to physical or chemical-based models, data-driven machine learning (ML) methods offer a new solution to this problem. Although this approach is promising for handling the complex, non-linear, non-additive relationship between concrete mixture proportions and strength, a major limitation of ML lies in the fact that large datasets are needed for model training. This is a concern as reliable, consistent strength data is rather limited, especially for realistic industrial concretes. Here, based on the analysis of a large dataset (>10,000 observations) of measured compressive strengths from industrially-produced concretes, we compare the ability of select ML algorithms to "learn" how to reliably predict concrete strength as a function of the size of the dataset. Based on these results, we discuss the competition between how accurate a given model can eventually be (when trained on a large dataset) and how much data is actually required to train this model.

Deli Yan, Chunhui Wu, Weiming Wang et al.

To achieve robust and accurate state estimation for robot navigation, we propose a novel Visual Inertial Odometry(VIO) algorithm with line features upon the theory of invariant Kalman filtering and Cubature Kalman Filter (CKF). In contrast with conventional CKF, the state of the filter is constructed by a high dimensional Matrix Lie group and the uncertainty is represented using Lie algebra. To improve the robustness of system in challenging scenes, e.g. low-texture or illumination changing environments, line features are brought into the state variable. In the proposed algorithm, exponential mapping of Lie algebra is used to construct the cubature points and the re-projection errors of lines are built as observation function for updating the state. This method accurately describes the system uncertainty in rotation and reduces the linearization error of system, which extends traditional CKF from Euclidean space to manifold. It not only inherits the advantages of invariant filtering in consistency, but also avoids the complex Jacobian calculation of high-dimensional matrix. To demonstrate the effectiveness of the proposed algorithm, we compare it with the state-of-the-art filtering-based VIO algorithms on Euroc datasets. And the results show that the proposed algorithm is effective in improving accuracy and robustness of estimation.

Yu Song, Shengping Gong

In the preliminary trajectory design of the multi-target rendezvous problem, a model that can quickly estimate the cost of the orbital transfer is essential. The estimation of the transfer time using solar sail between two arbitrary orbits is difficult and usually requires to solve an optimal control problem. Inspired by the successful applications of the deep neural network in nonlinear regression, this work explores the possibility and effectiveness of mapping the transfer time for solar sail from the orbital characteristics using the deep neural network. Furthermore, the Monte Carlo Tree Search method is investigated and used to search the optimal sequence considering a multi-asteroid exploration problem. The obtained sequences from preliminary design will be solved and verified by sequentially solving the optimal control problem. Two examples of different application backgrounds validate the effectiveness of the proposed approach.

Fei Qi, Zhaohui Xia, Gaoyang Tang et al.

As an emerging field, Automated Machine Learning (AutoML) aims to reduce or eliminate manual operations that require expertise in machine learning. In this paper, a graph-based architecture is employed to represent flexible combinations of ML models, which provides a large searching space compared to tree-based and stacking-based architectures. Based on this, an evolutionary algorithm is proposed to search for the best architecture, where the mutation and heredity operators are the key for architecture evolution. With Bayesian hyper-parameter optimization, the proposed approach can automate the workflow of machine learning. On the PMLB dataset, the proposed approach shows the state-of-the-art performance compared with TPOT, Autostacker, and auto-sklearn. Some of the optimized models are with complex structures which are difficult to obtain in manual design.

Shichao Yang, Yu Song, Michael Kaess et al.

Existing simultaneous localization and mapping (SLAM) algorithms are not robust in challenging low-texture environments because there are only few salient features. The resulting sparse or semi-dense map also conveys little information for motion planning. Though some work utilize plane or scene layout for dense map regularization, they require decent state estimation from other sources. In this paper, we propose real-time monocular plane SLAM to demonstrate that scene understanding could improve both state estimation and dense mapping especially in low-texture environments. The plane measurements come from a pop-up 3D plane model applied to each single image. We also combine planes with point based SLAM to improve robustness. On a public TUM dataset, our algorithm generates a dense semantic 3D model with pixel depth error of 6.2 cm while existing SLAM algorithms fail. On a 60 m long dataset with loops, our method creates a much better 3D model with state estimation error of 0.67%.

Yu Song, Yiquan Wu

The problem of fitting a union of subspaces to a collection of data points drawn from multiple subspaces is considered in this paper. In the traditional low rank representation model, the dictionary used to represent the data points is chosen as the data points themselves and thus the dictionary is corrupted with noise. This problem is solved in the low rank subspace clustering model which decomposes the corrupted data matrix as the sum of a clean and self-expressive dictionary plus a matrix of noise and gross errors. Also, the clustering results of the low rank representation model can be enhanced by using a graph of data similarity. This model is called Laplacian regularized low rank representation model with a graph regularization term added to the objective function. Inspired from the above two ideas, in this paper a Laplacian regularized low rank subspace clustering model is proposed. This model uses a clean dictionary to represent the data points and a graph regularization term is also incorporated in the objective function. Experimental results show that, compared with the traditional low rank representation model, low rank subspace clustering model and several other state-of-the-art subspace clustering model, the model proposed in this paper can get better subspace clustering results with lower clustering error.

Yu Song, Yiquan Wu

Subspace clustering refers to the problem of segmenting a set of data points approximately drawn from a union of multiple linear subspaces. Aiming at the subspace clustering problem, various subspace clustering algorithms have been proposed and low rank representation based subspace clustering is a very promising and efficient subspace clustering algorithm. Low rank representation method seeks the lowest rank representation among all the candidates that can represent the data points as linear combinations of the bases in a given dictionary. Nuclear norm minimization is adopted to minimize the rank of the representation matrix. However, nuclear norm is not a very good approximation of the rank of a matrix and the representation matrix thus obtained can be of high rank which will affect the final clustering accuracy. Weighted nuclear norm (WNN) is a better approximation of the rank of a matrix and WNN is adopted in this paper to describe the rank of the representation matrix. The convex program is solved via conventional alternation direction method of multipliers (ADMM) and linearized alternating direction method of multipliers (LADMM) and they are respectively refer to as WNNM-LRR and WNNM-LRR(L). Experimental results show that, compared with low rank representation method and several other state-of-the-art subspace clustering methods, WNNM-LRR and WNNM-LRR(L) can get higher clustering accuracy.