LGNov 21, 2023
DMLR: Data-centric Machine Learning Research -- Past, Present and FutureLuis Oala, Manil Maskey, Lilith Bat-Leah et al. · mit
Drawing from discussions at the inaugural DMLR workshop at ICML 2023 and meetings prior, in this report we outline the relevance of community engagement and infrastructure development for the creation of next-generation public datasets that will advance machine learning science. We chart a path forward as a collective effort to sustain the creation and maintenance of these datasets and methods towards positive scientific, societal and business impact.
IVJun 23, 2023
DiffInfinite: Large Mask-Image Synthesis via Parallel Random Patch Diffusion in HistopathologyMarco Aversa, Gabriel Nobis, Miriam Hägele et al.
We present DiffInfinite, a hierarchical diffusion model that generates arbitrarily large histological images while preserving long-range correlation structural information. Our approach first generates synthetic segmentation masks, subsequently used as conditions for the high-fidelity generative diffusion process. The proposed sampling method can be scaled up to any desired image size while only requiring small patches for fast training. Moreover, it can be parallelized more efficiently than previous large-content generation methods while avoiding tiling artifacts. The training leverages classifier-free guidance to augment a small, sparsely annotated dataset with unlabelled data. Our method alleviates unique challenges in histopathological imaging practice: large-scale information, costly manual annotation, and protective data handling. The biological plausibility of DiffInfinite data is evaluated in a survey by ten experienced pathologists as well as a downstream classification and segmentation task. Samples from the model score strongly on anti-copying metrics which is relevant for the protection of patient data.
LGJun 13, 2023
Pruning the Way to Reliable Policies: A Multi-Objective Deep Q-Learning Approach to Critical CareAli Shirali, Alexander Schubert, Ahmed Alaa · berkeley
Medical treatments often involve a sequence of decisions, each informed by previous outcomes. This process closely aligns with reinforcement learning (RL), a framework for optimizing sequential decisions to maximize cumulative rewards under unknown dynamics. While RL shows promise for creating data-driven treatment plans, its application in medical contexts is challenging due to the frequent need to use sparse rewards, primarily defined based on mortality outcomes. This sparsity can reduce the stability of offline estimates, posing a significant hurdle in fully utilizing RL for medical decision-making. We introduce a deep Q-learning approach to obtain more reliable critical care policies by integrating relevant but noisy frequently measured biomarker signals into the reward specification without compromising the optimization of the main outcome. Our method prunes the action space based on all available rewards before training a final model on the sparse main reward. This approach minimizes potential distortions of the main objective while extracting valuable information from intermediate signals to guide learning. We evaluate our method in off-policy and offline settings using simulated environments and real health records from intensive care units. Our empirical results demonstrate that our method outperforms common offline RL methods such as conservative Q-learning and batch-constrained deep Q-learning. By disentangling sparse rewards and frequently measured reward proxies through action pruning, our work represents a step towards developing reliable policies that effectively harness the wealth of available information in data-intensive critical care environments.
IVAug 30, 2024
Generative AI Enables Medical Image Segmentation in Ultra Low-Data RegimesLi Zhang, Basu Jindal, Ahmed Alaa et al.
Semantic segmentation of medical images is pivotal in applications like disease diagnosis and treatment planning. While deep learning has excelled in automating this task, a major hurdle is the need for numerous annotated segmentation masks, which are resource-intensive to produce due to the required expertise and time. This scenario often leads to ultra low-data regimes, where annotated images are extremely limited, posing significant challenges for the generalization of conventional deep learning methods on test images. To address this, we introduce a generative deep learning framework, which uniquely generates high-quality paired segmentation masks and medical images, serving as auxiliary data for training robust models in data-scarce environments. Unlike traditional generative models that treat data generation and segmentation model training as separate processes, our method employs multi-level optimization for end-to-end data generation. This approach allows segmentation performance to directly influence the data generation process, ensuring that the generated data is specifically tailored to enhance the performance of the segmentation model. Our method demonstrated strong generalization performance across 9 diverse medical image segmentation tasks and on 16 datasets, in ultra-low data regimes, spanning various diseases, organs, and imaging modalities. When applied to various segmentation models, it achieved performance improvements of 10-20\% (absolute), in both same-domain and out-of-domain scenarios. Notably, it requires 8 to 20 times less training data than existing methods to achieve comparable results. This advancement significantly improves the feasibility and cost-effectiveness of applying deep learning in medical imaging, particularly in scenarios with limited data availability.
LGAug 28, 2023
Conformal Meta-learners for Predictive Inference of Individual Treatment EffectsAhmed Alaa, Zaid Ahmad, Mark van der Laan
We investigate the problem of machine learning-based (ML) predictive inference on individual treatment effects (ITEs). Previous work has focused primarily on developing ML-based meta-learners that can provide point estimates of the conditional average treatment effect (CATE); these are model-agnostic approaches for combining intermediate nuisance estimates to produce estimates of CATE. In this paper, we develop conformal meta-learners, a general framework for issuing predictive intervals for ITEs by applying the standard conformal prediction (CP) procedure on top of CATE meta-learners. We focus on a broad class of meta-learners based on two-stage pseudo-outcome regression and develop a stochastic ordering framework to study their validity. We show that inference with conformal meta-learners is marginally valid if their (pseudo outcome) conformity scores stochastically dominate oracle conformity scores evaluated on the unobserved ITEs. Additionally, we prove that commonly used CATE meta-learners, such as the doubly-robust learner, satisfy a model- and distribution-free stochastic (or convex) dominance condition, making their conformal inferences valid for practically-relevant levels of target coverage. Whereas existing procedures conduct inference on nuisance parameters (i.e., potential outcomes) via weighted CP, conformal meta-learners enable direct inference on the target parameter (ITE). Numerical experiments show that conformal meta-learners provide valid intervals with competitive efficiency while retaining the favorable point estimation properties of CATE meta-learners.
AIJul 26, 2024
Large Language Models as Co-Pilots for Causal Inference in Medical StudiesAhmed Alaa, Rachael V. Phillips, Emre Kıcıman et al.
The validity of medical studies based on real-world clinical data, such as observational studies, depends on critical assumptions necessary for drawing causal conclusions about medical interventions. Many published studies are flawed because they violate these assumptions and entail biases such as residual confounding, selection bias, and misalignment between treatment and measurement times. Although researchers are aware of these pitfalls, they continue to occur because anticipating and addressing them in the context of a specific study can be challenging without a large, often unwieldy, interdisciplinary team with extensive expertise. To address this expertise gap, we explore the use of large language models (LLMs) as co-pilot tools to assist researchers in identifying study design flaws that undermine the validity of causal inferences. We propose a conceptual framework for LLMs as causal co-pilots that encode domain knowledge across various fields, engaging with researchers in natural language interactions to provide contextualized assistance in study design. We provide illustrative examples of how LLMs can function as causal co-pilots, propose a structured framework for their grounding in existing causal inference frameworks, and highlight the unique challenges and opportunities in adapting LLMs for reliable use in epidemiological research.
BMNov 16, 2023
Generating Drug Repurposing Hypotheses through the Combination of Disease-Specific HypergraphsAyush Jain, Marie Laure-Charpignon, Irene Y. Chen et al.
The drug development pipeline for a new compound can last 10-20 years and cost over 10 billion. Drug repurposing offers a more time- and cost-effective alternative. Computational approaches based on biomedical knowledge graph representations have recently yielded new drug repurposing hypotheses. In this study, we present a novel, disease-specific hypergraph representation learning technique to derive contextual embeddings of biological pathways of various lengths but that all start at any given drug and all end at the disease of interest. Further, we extend this method to multi-disease hypergraphs. To determine the repurposing potential of each of the 1,522 drugs, we derive drug-specific distributions of cosine similarity values and ultimately consider the median for ranking. Cosine similarity values are computed between (1) all biological pathways starting at the considered drug and ending at the disease of interest and (2) all biological pathways starting at drugs currently prescribed against that disease and ending at the disease of interest. We illustrate our approach with Alzheimer's disease (AD) and two of its risk factors: hypertension (HTN) and type 2 diabetes (T2D). We compare each drug's rank across four hypergraph settings (single- or multi-disease): AD only, AD + HTN, AD + T2D, and AD + HTN + T2D. Notably, our framework led to the identification of two promising drugs whose repurposing potential was significantly higher in hypergraphs combining two diseases: dapagliflozin (antidiabetic; moved up, from top 32$\%$ to top 7$\%$, across all considered drugs) and debrisoquine (antihypertensive; moved up, from top 76$\%$ to top 23$\%$). Our approach serves as a hypothesis generation tool, to be paired with a validation pipeline relying on laboratory experiments and semi-automated parsing of the biomedical literature.
CVFeb 2
ReasonEdit: Editing Vision-Language Models using Human ReasoningJiaxing Qiu, Kaihua Hou, Roxana Daneshjou et al.
Model editing aims to correct errors in large, pretrained models without altering unrelated behaviors. While some recent works have edited vision-language models (VLMs), no existing editors tackle reasoning-heavy tasks, which typically require humans and models to reason about images. We therefore propose ReasonEdit, the first VLM editor to let users explain their reasoning during editing, introducing a new, practical model editing setup. ReasonEdit continuously stores human reasoning in a codebook, and retrieves only relevant facts during inference using a novel topology-balanced multimodal embedding method inspired by network science. Across four VLMs on multiple rationale-based visual question answering datasets, ReasonEdit achieves state-of-the-art editing performance, ultimately showing that using human reasoning during editing greatly improves edit generalization.
LGSep 15, 2024
Veridical Data Science for Medical Foundation ModelsAhmed Alaa, Bin Yu
The advent of foundation models (FMs) such as large language models (LLMs) has led to a cultural shift in data science, both in medicine and beyond. This shift involves moving away from specialized predictive models trained for specific, well-defined domain questions to generalist FMs pre-trained on vast amounts of unstructured data, which can then be adapted to various clinical tasks and questions. As a result, the standard data science workflow in medicine has been fundamentally altered; the foundation model lifecycle (FMLC) now includes distinct upstream and downstream processes, in which computational resources, model and data access, and decision-making power are distributed among multiple stakeholders. At their core, FMs are fundamentally statistical models, and this new workflow challenges the principles of Veridical Data Science (VDS), hindering the rigorous statistical analysis expected in transparent and scientifically reproducible data science practices. We critically examine the medical FMLC in light of the core principles of VDS: predictability, computability, and stability (PCS), and explain how it deviates from the standard data science workflow. Finally, we propose recommendations for a reimagined medical FMLC that expands and refines the PCS principles for VDS including considering the computational and accessibility constraints inherent to FMs.
CVMay 13
Test-Time Hinting for Black-Box Vision-Language ModelsKaihua Hou, Abhijith Varma Mudunuri, Jiaxing Qiu et al.
Test-time scaling (TTS) methods have proven highly effective for LLMs, yet their application to vision-language models (VLMs) remains relatively underexplored. Existing VLM TTS methods largely require open-weight model access or expensive repeated sampling, and are evaluated primarily on multimodal mathematical and scientific reasoning benchmarks rather than general visual understanding tasks. In this paper, we propose Test-Time Hinting, a method that improves VLM performance via a single VLM call and requiring only black-box API access, which makes it broadly applicable to frontier closed-weight models. Our method is motivated by the observation that VLM errors tend to cluster around recurring failure patterns. We therefore train a lightweight hint generator model to predict, for a given test input, which "hint" should be prepended to the prompt, providing targeted contextual or procedural guidance that steers the VLM away from its characteristic failure modes. We show that Test-Time Hinting improves the accuracy of multiple closed-weight VLMs on natural-image VQA benchmarks and that these gains generalize to unseen benchmarks and VLMs without retraining the hint generator.
LGNov 12, 2025
Data reuse enables cost-efficient randomized trials of medical AI modelsMichael Nercessian, Wenxin Zhang, Alexander Schubert et al.
Randomized controlled trials (RCTs) are indispensable for establishing the clinical value of medical artificial-intelligence (AI) tools, yet their high cost and long timelines hinder timely validation as new models emerge rapidly. Here, we propose BRIDGE, a data-reuse RCT design for AI-based risk models. AI risk models support a broad range of interventions, including screening, treatment selection, and clinical alerts. BRIDGE trials recycle participant-level data from completed trials of AI models when legacy and updated models make concordant predictions, thereby reducing the enrollment requirement for subsequent trials. We provide a practical checklist for investigators to assess whether reusing data from previous trials allows for valid causal inference and preserves type I error. Using real-world datasets across breast cancer, cardiovascular disease, and sepsis, we demonstrate concordance between successive AI models, with up to 64.8% overlap in top 5% high-risk cohorts. We then simulate a series of breast cancer screening studies, where our design reduced required enrollment by 46.6%--saving over US$2.8 million--while maintaining 80% power. By transforming trials into adaptive, modular studies, our proposed design makes Level I evidence generation feasible for every model iteration, thereby accelerating cost-effective translation of AI into routine care.
QMJan 31, 2024
EEG-GPT: Exploring Capabilities of Large Language Models for EEG Classification and InterpretationJonathan W. Kim, Ahmed Alaa, Danilo Bernardo
In conventional machine learning (ML) approaches applied to electroencephalography (EEG), this is often a limited focus, isolating specific brain activities occurring across disparate temporal scales (from transient spikes in milliseconds to seizures lasting minutes) and spatial scales (from localized high-frequency oscillations to global sleep activity). This siloed approach limits the development EEG ML models that exhibit multi-scale electrophysiological understanding and classification capabilities. Moreover, typical ML EEG approaches utilize black-box approaches, limiting their interpretability and trustworthiness in clinical contexts. Thus, we propose EEG-GPT, a unifying approach to EEG classification that leverages advances in large language models (LLM). EEG-GPT achieves excellent performance comparable to current state-of-the-art deep learning methods in classifying normal from abnormal EEG in a few-shot learning paradigm utilizing only 2% of training data. Furthermore, it offers the distinct advantages of providing intermediate reasoning steps and coordinating specialist EEG tools across multiple scales in its operation, offering transparent and interpretable step-by-step verification, thereby promoting trustworthiness in clinical contexts.
CLMar 12, 2025
Medical Large Language Model Benchmarks Should Prioritize Construct ValidityAhmed Alaa, Thomas Hartvigsen, Niloufar Golchini et al.
Medical large language models (LLMs) research often makes bold claims, from encoding clinical knowledge to reasoning like a physician. These claims are usually backed by evaluation on competitive benchmarks; a tradition inherited from mainstream machine learning. But how do we separate real progress from a leaderboard flex? Medical LLM benchmarks, much like those in other fields, are arbitrarily constructed using medical licensing exam questions. For these benchmarks to truly measure progress, they must accurately capture the real-world tasks they aim to represent. In this position paper, we argue that medical LLM benchmarks should (and indeed can) be empirically evaluated for their construct validity. In the psychological testing literature, "construct validity" refers to the ability of a test to measure an underlying "construct", that is the actual conceptual target of evaluation. By drawing an analogy between LLM benchmarks and psychological tests, we explain how frameworks from this field can provide empirical foundations for validating benchmarks. To put these ideas into practice, we use real-world clinical data in proof-of-concept experiments to evaluate popular medical LLM benchmarks and report significant gaps in their construct validity. Finally, we outline a vision for a new ecosystem of medical LLM evaluation centered around the creation of valid benchmarks.
CLFeb 5, 2025
Limitations of Large Language Models in Clinical Problem-Solving Arising from Inflexible ReasoningJonathan Kim, Anna Podlasek, Kie Shidara et al.
Large Language Models (LLMs) have attained human-level accuracy on medical question-answer (QA) benchmarks. However, their limitations in navigating open-ended clinical scenarios have recently been shown, raising concerns about the robustness and generalizability of LLM reasoning across diverse, real-world medical tasks. To probe potential LLM failure modes in clinical problem-solving, we present the medical abstraction and reasoning corpus (M-ARC). M-ARC assesses clinical reasoning through scenarios designed to exploit the Einstellung effect -- the fixation of thought arising from prior experience, targeting LLM inductive biases toward inflexible pattern matching from their training data rather than engaging in flexible reasoning. We find that LLMs, including current state-of-the-art o1 and Gemini models, perform poorly compared to physicians on M-ARC, often demonstrating lack of commonsense medical reasoning and a propensity to hallucinate. In addition, uncertainty estimation analyses indicate that LLMs exhibit overconfidence in their answers, despite their limited accuracy. The failure modes revealed by M-ARC in LLM medical reasoning underscore the need to exercise caution when deploying these models in clinical settings.
AIJan 10, 2025
BioAgents: Democratizing Bioinformatics Analysis with Multi-Agent SystemsNikita Mehandru, Amanda K. Hall, Olesya Melnichenko et al.
Creating end-to-end bioinformatics workflows requires diverse domain expertise, which poses challenges for both junior and senior researchers as it demands a deep understanding of both genomics concepts and computational techniques. While large language models (LLMs) provide some assistance, they often fall short in providing the nuanced guidance needed to execute complex bioinformatics tasks, and require expensive computing resources to achieve high performance. We thus propose a multi-agent system built on small language models, fine-tuned on bioinformatics data, and enhanced with retrieval augmented generation (RAG). Our system, BioAgents, enables local operation and personalization using proprietary data. We observe performance comparable to human experts on conceptual genomics tasks, and suggest next steps to enhance code generation capabilities.
CLMay 28, 2025
ER-REASON: A Benchmark Dataset for LLM-Based Clinical Reasoning in the Emergency RoomNikita Mehandru, Niloufar Golchini, David Bamman et al.
Large language models (LLMs) have been extensively evaluated on medical question answering tasks based on licensing exams. However, real-world evaluations often depend on costly human annotators, and existing benchmarks tend to focus on isolated tasks that rarely capture the clinical reasoning or full workflow underlying medical decisions. In this paper, we introduce ER-Reason, a benchmark designed to evaluate LLM-based clinical reasoning and decision-making in the emergency room (ER)--a high-stakes setting where clinicians make rapid, consequential decisions across diverse patient presentations and medical specialties under time pressure. ER-Reason includes data from 3,984 patients, encompassing 25,174 de-identified longitudinal clinical notes spanning discharge summaries, progress notes, history and physical exams, consults, echocardiography reports, imaging notes, and ER provider documentation. The benchmark includes evaluation tasks that span key stages of the ER workflow: triage intake, initial assessment, treatment selection, disposition planning, and final diagnosis--each structured to reflect core clinical reasoning processes such as differential diagnosis via rule-out reasoning. We also collected 72 full physician-authored rationales explaining reasoning processes that mimic the teaching process used in residency training, and are typically absent from ER documentation. Evaluations of state-of-the-art LLMs on ER-Reason reveal a gap between LLM-generated and clinician-authored clinical reasoning for ER decisions, highlighting the need for future research to bridge this divide.
LGJan 17, 2025
Conformal Prediction Sets with Improved Conditional Coverage using Trust ScoresJivat Neet Kaur, Michael I. Jordan, Ahmed Alaa
Standard conformal prediction offers a marginal guarantee on coverage, but for prediction sets to be truly useful, they should ideally ensure coverage conditional on each test point. Unfortunately, it is impossible to achieve exact, distribution-free conditional coverage in finite samples. In this work, we propose an alternative conformal prediction algorithm that targets coverage where it matters most--in instances where a classifier is overconfident in its incorrect predictions. We start by dissecting miscoverage events in marginally-valid conformal prediction, and show that miscoverage rates vary based on the classifier's confidence and its deviation from the Bayes optimal classifier. Motivated by this insight, we develop a variant of conformal prediction that targets coverage conditional on a reduced set of two variables: the classifier's confidence in a prediction and a nonparametric trust score that measures its deviation from the Bayes classifier. Empirical evaluation on multiple image datasets shows that our method generally improves conditional coverage properties compared to standard conformal prediction, including class-conditional coverage, coverage over arbitrary subgroups, and coverage over demographic groups.
MLFeb 8, 2025
Generalized Venn and Venn-Abers Calibration with Applications in Conformal PredictionLars van der Laan, Ahmed Alaa
Ensuring model calibration is critical for reliable prediction, yet popular distribution-free methods such as histogram binning and isotonic regression offer only asymptotic guarantees. We introduce a unified framework for Venn and Venn-Abers calibration that extends Vovk's approach beyond binary classification to a broad class of prediction problems defined by generic loss functions. Our method transforms any perfectly in-sample calibrated predictor into a set-valued predictor that, in finite samples, outputs at least one marginally calibrated point prediction. These set predictions shrink asymptotically and converge to a single conditionally calibrated prediction, capturing epistemic uncertainty. We further propose Venn multicalibration, a new approach for achieving finite-sample calibration across subpopulations. For quantile loss, our framework recovers group-conditional and multicalibrated conformal prediction as special cases and yields novel prediction intervals with quantile-conditional coverage.
CLFeb 3, 2025
Lifelong Knowledge Editing requires Better RegularizationAkshat Gupta, Phudish Prateepamornkul, Maochuan Lu et al.
Knowledge editing is a promising way to improve factuality in large language models, but recent studies have shown significant model degradation during sequential editing. In this paper, we formalize the popular locate-then-edit methods as a two-step fine-tuning process, allowing us to precisely identify the root cause of this degradation. We show that model degradation occurs due to (1) over-optimization of internal activations and (2) continuous norm-growth of edited matrices. To mitigate these issues, we introduce two regularization techniques: (1) Most-Probable Early Stopping (MPES) and (2) explicit Frobenius norm-constraint. We demonstrate that applying these simple yet effective regularization techniques at key points in the editing process can substantially mitigate model degradation. Combining these regularization methods enables scaling locate-then-edit methods to 10,000 edits while reducing editing time by 42-61%. These results show that targeted regularization is essential for lifelong knowledge editing.
MLFeb 10
Causal Effect Estimation with Learned Instrument RepresentationsFrances Dean, Jenna Fields, Radhika Bhalerao et al.
Instrumental variable (IV) methods mitigate bias from unobserved confounding in observational causal inference but rely on the availability of a valid instrument, which can often be difficult or infeasible to identify in practice. In this paper, we propose a representation learning approach that constructs instrumental representations from observed covariates, which enable IV-based estimation even in the absence of an explicit instrument. Our model (ZNet) achieves this through an architecture that mirrors the structural causal model of IVs; it decomposes the ambient feature space into confounding and instrumental components, and is trained by enforcing empirical moment conditions corresponding to the defining properties of valid instruments (i.e., relevance, exclusion restriction, and instrumental unconfoundedness). Importantly, ZNet is compatible with a wide range of downstream two-stage IV estimators of causal effects. Our experiments demonstrate that ZNet can (i) recover ground-truth instruments when they already exist in the ambient feature space and (ii) construct latent instruments in the embedding space when no explicit IVs are available. This suggests that ZNet can be used as a ``plug-and-play'' module for causal inference in general observational settings, regardless of whether the (untestable) assumption of unconfoundedness is satisfied.
AIFeb 2
Aligning Language Model Benchmarks with Pairwise PreferencesMarco Gutierrez, Xinyi Leng, Hannah Cyberey et al.
Language model benchmarks are pervasive and computationally-efficient proxies for real-world performance. However, many recent works find that benchmarks often fail to predict real utility. Towards bridging this gap, we introduce benchmark alignment, where we use limited amounts of information about model performance to automatically update offline benchmarks, aiming to produce new static benchmarks that predict model pairwise preferences in given test settings. We then propose BenchAlign, the first solution to this problem, which learns preference-aligned weight- ings for benchmark questions using the question-level performance of language models alongside ranked pairs of models that could be collected during deployment, producing new benchmarks that rank previously unseen models according to these preferences. Our experiments show that our aligned benchmarks can accurately rank unseen models according to models of human preferences, even across different sizes, while remaining interpretable. Overall, our work provides insights into the limits of aligning benchmarks with practical human preferences, which stands to accelerate model development towards real utility.
LGJun 16, 2025
Hybrid Meta-learners for Estimating Heterogeneous Treatment EffectsZhongyuan Liang, Lars van der Laan, Ahmed Alaa
Estimating conditional average treatment effects (CATE) from observational data involves modeling decisions that differ from supervised learning, particularly concerning how to regularize model complexity. Previous approaches can be grouped into two primary "meta-learner" paradigms that impose distinct inductive biases. Indirect meta-learners first fit and regularize separate potential outcome (PO) models and then estimate CATE by taking their difference, whereas direct meta-learners construct and directly regularize estimators for the CATE function itself. Neither approach consistently outperforms the other across all scenarios: indirect learners perform well when the PO functions are simple, while direct learners outperform when the CATE is simpler than individual PO functions. In this paper, we introduce the Hybrid Learner (H-learner), a novel regularization strategy that interpolates between the direct and indirect regularizations depending on the dataset at hand. The H-learner achieves this by learning intermediate functions whose difference closely approximates the CATE without necessarily requiring accurate individual approximations of the POs themselves. We demonstrate empirically that intentionally allowing suboptimal fits to the POs improves the bias-variance tradeoff in estimating CATE. Experiments conducted on semi-synthetic and real-world benchmark datasets illustrate that the H-learner consistently operates at the Pareto frontier, effectively combining the strengths of both direct and indirect meta-learners.
CLMay 23, 2025
Model Editing with Graph-Based External MemoryYash Kumar Atri, Ahmed Alaa, Thomas Hartvigsen
Large language models (LLMs) have revolutionized natural language processing, yet their practical utility is often limited by persistent issues of hallucinations and outdated parametric knowledge. Although post-training model editing offers a pathway for dynamic updates, existing methods frequently suffer from overfitting and catastrophic forgetting. To tackle these challenges, we propose a novel framework that leverages hyperbolic geometry and graph neural networks for precise and stable model edits. We introduce HYPE (HYperbolic Parameter Editing), which comprises three key components: (i) Hyperbolic Graph Construction, which uses Poincaré embeddings to represent knowledge triples in hyperbolic space, preserving hierarchical relationships and preventing unintended side effects by ensuring that edits to parent concepts do not inadvertently affect child concepts; (ii) Möbius-Transformed Updates, which apply hyperbolic addition to propagate edits while maintaining structural consistency within the hyperbolic manifold, unlike conventional Euclidean updates that distort relational distances; and (iii) Dual Stabilization, which combines gradient masking and periodic GNN parameter resetting to prevent catastrophic forgetting by focusing updates on critical parameters and preserving long-term knowledge. Experiments on CounterFact, CounterFact+, and MQuAKE with GPT-J and GPT2-XL demonstrate that HYPE significantly enhances edit stability, factual accuracy, and multi-hop reasoning.
CLFeb 26, 2025
Norm Growth and Stability Challenges in Localized Sequential Knowledge EditingAkshat Gupta, Christine Fang, Atahan Ozdemir et al.
This study investigates the impact of localized updates to large language models (LLMs), specifically in the context of knowledge editing - a task aimed at incorporating or modifying specific facts without altering broader model capabilities. We first show that across different post-training interventions like continuous pre-training, full fine-tuning and LORA-based fine-tuning, the Frobenius norm of the updated matrices always increases. This increasing norm is especially detrimental for localized knowledge editing, where only a subset of matrices are updated in a model . We reveal a consistent phenomenon across various editing techniques, including fine-tuning, hypernetwork-based approaches, and locate-and-edit methods: the norm of the updated matrix invariably increases with successive updates. Such growth disrupts model balance, particularly when isolated matrices are updated while the rest of the model remains static, leading to potential instability and degradation of downstream performance. Upon deeper investigations of the intermediate activation vectors, we find that the norm of internal activations decreases and is accompanied by shifts in the subspaces occupied by these activations, which shows that these activation vectors now occupy completely different regions in the representation space compared to the unedited model. With our paper, we highlight the technical challenges with continuous and localized sequential knowledge editing and their implications for maintaining model stability and utility.
LGJun 8, 2024
Mean-field Chaos Diffusion ModelsSungwoo Park, Dongjun Kim, Ahmed Alaa
In this paper, we introduce a new class of score-based generative models (SGMs) designed to handle high-cardinality data distributions by leveraging concepts from mean-field theory. We present mean-field chaos diffusion models (MF-CDMs), which address the curse of dimensionality inherent in high-cardinality data by utilizing the propagation of chaos property of interacting particles. By treating high-cardinality data as a large stochastic system of interacting particles, we develop a novel score-matching method for infinite-dimensional chaotic particle systems and propose an approximation scheme that employs a subdivision strategy for efficient training. Our theoretical and empirical results demonstrate the scalability and effectiveness of MF-CDMs for managing large high-cardinality data structures, such as 3D point clouds.
MLJun 5, 2024
Prediction-powered Generalization of Causal InferencesIlker Demirel, Ahmed Alaa, Anthony Philippakis et al.
Causal inferences from a randomized controlled trial (RCT) may not pertain to a target population where some effect modifiers have a different distribution. Prior work studies generalizing the results of a trial to a target population with no outcome but covariate data available. We show how the limited size of trials makes generalization a statistically infeasible task, as it requires estimating complex nuisance functions. We develop generalization algorithms that supplement the trial data with a prediction model learned from an additional observational study (OS), without making any assumptions on the OS. We theoretically and empirically show that our methods facilitate better generalization when the OS is high-quality, and remain robust when it is not, and e.g., have unmeasured confounding.