Ruth Lim

Xiaofeng Liu, Fangxu Xing, Nadya Shusharina et al. · cmu, harvard

Unsupervised domain adaptation (UDA) has been vastly explored to alleviate domain shifts between source and target domains, by applying a well-performed model in an unlabeled target domain via supervision of a labeled source domain. Recent literature, however, has indicated that the performance is still far from satisfactory in the presence of significant domain shifts. Nonetheless, delineating a few target samples is usually manageable and particularly worthwhile, due to the substantial performance gain. Inspired by this, we aim to develop semi-supervised domain adaptation (SSDA) for medical image segmentation, which is largely underexplored. We, thus, propose to exploit both labeled source and target domain data, in addition to unlabeled target data in a unified manner. Specifically, we present a novel asymmetric co-training (ACT) framework to integrate these subsets and avoid the domination of the source domain data. Following a divide-and-conquer strategy, we explicitly decouple the label supervisions in SSDA into two asymmetric sub-tasks, including semi-supervised learning (SSL) and UDA, and leverage different knowledge from two segmentors to take into account the distinction between the source and target label supervisions. The knowledge learned in the two modules is then adaptively integrated with ACT, by iteratively teaching each other, based on the confidence-aware pseudo-label. In addition, pseudo label noise is well-controlled with an exponential MixUp decay scheme for smooth propagation. Experiments on cross-modality brain tumor MRI segmentation tasks using the BraTS18 database showed, even with limited labeled target samples, ACT yielded marked improvements over UDA and state-of-the-art SSDA methods and approached an "upper bound" of supervised joint training.

Nihal Raju, Michael Woodburn, Stefan Kachel et al.

Machine learning (ML) is a subfield of Artificial intelligence (AI), and its applications in radiology are growing at an ever-accelerating rate. The most studied ML application is the automated interpretation of images. However, natural language processing (NLP), which can be combined with ML for text interpretation tasks, also has many potential applications in radiology. One such application is automation of radiology protocolling, which involves interpreting a clinical radiology referral and selecting the appropriate imaging technique. It is an essential task which ensures that the correct imaging is performed. However, the time that a radiologist must dedicate to protocolling could otherwise be spent reporting, communicating with referrers, or teaching. To date, there have been few publications in which ML models were developed that use clinical text to automate protocol selection. This article reviews the existing literature in this field. A systematic assessment of the published models is performed with reference to best practices suggested by machine learning convention. Progress towards implementing automated protocolling in a clinical setting is discussed.

Hao Xu, Ruth Lim, Brian E. Chapman

Purpose: Aortic dissections are life-threatening cardiovascular conditions requiring accurate segmentation of true lumen (TL), false lumen (FL), and false lumen thrombosis (FLT) from CTA images for effective management. Manual segmentation is time-consuming and variable, necessitating automated solutions. Materials and Methods: We developed four deep learning-based pipelines for Type B aortic dissection segmentation: a single-step model, a sequential model, a sequential multi-task model, and an ensemble model, utilizing 3D U-Net and Swin-UnetR architectures. A dataset of 100 retrospective CTA images was split into training (n=80), validation (n=10), and testing (n=10). Performance was assessed using the Dice Coefficient and Hausdorff Distance. Results: Our approach achieved superior segmentation accuracy, with Dice Coefficients of 0.91 $\pm$ 0.07 for TL, 0.88 $\pm$ 0.18 for FL, and 0.47 $\pm$ 0.25 for FLT, outperforming Yao et al. (1), who reported 0.78 $\pm$ 0.20, 0.68 $\pm$ 0.18, and 0.25 $\pm$ 0.31, respectively. Conclusion: The proposed pipelines provide accurate segmentation of TBAD features, enabling derivation of morphological parameters for surveillance and treatment planning

Ruth P Lim, Stefan Kachel, Adriana DM Villa et al.

Objectives: To develop an image-based automatic deep learning method to classify cardiac MR images by sequence type and imaging plane for improved clinical post-processing efficiency. Methods: Multi-vendor cardiac MRI studies were retrospectively collected from 4 centres and 3 vendors. A two-head convolutional neural network ('CardiSort') was trained to classify 35 sequences by imaging sequence (n=17) and plane (n=10). Single vendor training (SVT) on single centre images (n=234 patients) and multi-vendor training (MVT) with multicentre images (n = 479 patients, 3 centres) was performed. Model accuracy was compared to manual ground truth labels by an expert radiologist on a hold-out test set for both SVT and MVT. External validation of MVT (MVTexternal) was performed on data from 3 previously unseen magnet systems from 2 vendors (n=80 patients). Results: High sequence and plane accuracies were observed for SVT (85.2% and 93.2% respectively), and MVT (96.5% and 98.1% respectively) on the hold-out test set. MVTexternal yielded sequence accuracy of 92.7% and plane accuracy of 93.0%. There was high accuracy for common sequences and conventional cardiac planes. Poor accuracy was observed for underrepresented classes and sequences where there was greater variability in acquisition parameters across centres, such as perfusion imaging. Conclusions: A deep learning network was developed on multivendor data to classify MRI studies into component sequences and planes, with external validation. With refinement, it has potential to improve workflow by enabling automated sequence selection, an important first step in completely automated post-processing pipelines.