ADRNet: A Generalized Collaborative Filtering Framework Combining Clinical and Non-Clinical Data for Adverse Drug Reaction PredictionHaoxuan Li, Taojun Hu, Zetong Xiong et al. · pku
Adverse drug reaction (ADR) prediction plays a crucial role in both health care and drug discovery for reducing patient mortality and enhancing drug safety. Recently, many studies have been devoted to effectively predict the drug-ADRs incidence rates. However, these methods either did not effectively utilize non-clinical data, i.e., physical, chemical, and biological information about the drug, or did little to establish a link between content-based and pure collaborative filtering during the training phase. In this paper, we first formulate the prediction of multi-label ADRs as a drug-ADR collaborative filtering problem, and to the best of our knowledge, this is the first work to provide extensive benchmark results of previous collaborative filtering methods on two large publicly available clinical datasets. Then, by exploiting the easy accessible drug characteristics from non-clinical data, we propose ADRNet, a generalized collaborative filtering framework combining clinical and non-clinical data for drug-ADR prediction. Specifically, ADRNet has a shallow collaborative filtering module and a deep drug representation module, which can exploit the high-dimensional drug descriptors to further guide the learning of low-dimensional ADR latent embeddings, which incorporates both the benefits of collaborative filtering and representation learning. Extensive experiments are conducted on two publicly available real-world drug-ADR clinical datasets and two non-clinical datasets to demonstrate the accuracy and efficiency of the proposed ADRNet. The code is available at https://github.com/haoxuanli-pku/ADRnet.
17.3LGNov 12, 2022
A Generalized Doubly Robust Learning Framework for Debiasing Post-Click Conversion Rate PredictionQuanyu Dai, Haoxuan Li, Peng Wu et al. · pku
Post-click conversion rate (CVR) prediction is an essential task for discovering user interests and increasing platform revenues in a range of industrial applications. One of the most challenging problems of this task is the existence of severe selection bias caused by the inherent self-selection behavior of users and the item selection process of systems. Currently, doubly robust (DR) learning approaches achieve the state-of-the-art performance for debiasing CVR prediction. However, in this paper, by theoretically analyzing the bias, variance and generalization bounds of DR methods, we find that existing DR approaches may have poor generalization caused by inaccurate estimation of propensity scores and imputation errors, which often occur in practice. Motivated by such analysis, we propose a generalized learning framework that not only unifies existing DR methods, but also provides a valuable opportunity to develop a series of new debiasing techniques to accommodate different application scenarios. Based on the framework, we propose two new DR methods, namely DR-BIAS and DR-MSE. DR-BIAS directly controls the bias of DR loss, while DR-MSE balances the bias and variance flexibly, which achieves better generalization performance. In addition, we propose a novel tri-level joint learning optimization method for DR-MSE in CVR prediction, and an efficient training algorithm correspondingly. We conduct extensive experiments on both real-world and semi-synthetic datasets, which validate the effectiveness of our proposed methods.
15.9IRJul 9, 2022
Multiple Robust Learning for RecommendationHaoxuan Li, Quanyu Dai, Yuru Li et al. · pku
In recommender systems, a common problem is the presence of various biases in the collected data, which deteriorates the generalization ability of the recommendation models and leads to inaccurate predictions. Doubly robust (DR) learning has been studied in many tasks in RS, with the advantage that unbiased learning can be achieved when either a single imputation or a single propensity model is accurate. In this paper, we propose a multiple robust (MR) estimator that can take the advantage of multiple candidate imputation and propensity models to achieve unbiasedness. Specifically, the MR estimator is unbiased when any of the imputation or propensity models, or a linear combination of these models is accurate. Theoretical analysis shows that the proposed MR is an enhanced version of DR when only having a single imputation and propensity model, and has a smaller bias. Inspired by the generalization error bound of MR, we further propose a novel multiple robust learning approach with stabilization. We conduct extensive experiments on real-world and semi-synthetic datasets, which demonstrates the superiority of the proposed approach over state-of-the-art methods.
Debiased Recommendation with Noisy FeedbackHaoxuan Li, Chunyuan Zheng, Wenjie Wang et al.
Ratings of a user to most items in recommender systems are usually missing not at random (MNAR), largely because users are free to choose which items to rate. To achieve unbiased learning of the prediction model under MNAR data, three typical solutions have been proposed, including error-imputation-based (EIB), inverse-propensity-scoring (IPS), and doubly robust (DR) methods. However, these methods ignore an alternative form of bias caused by the inconsistency between the observed ratings and the users' true preferences, also known as noisy feedback or outcome measurement errors (OME), e.g., due to public opinion or low-quality data collection process. In this work, we study intersectional threats to the unbiased learning of the prediction model from data MNAR and OME in the collected data. First, we design OME-EIB, OME-IPS, and OME-DR estimators, which largely extend the existing estimators to combat OME in real-world recommendation scenarios. Next, we theoretically prove the unbiasedness and generalization bound of the proposed estimators. We further propose an alternate denoising training approach to achieve unbiased learning of the prediction model under MNAR data with OME. Extensive experiments are conducted on three real-world datasets and one semi-synthetic dataset to show the effectiveness of our proposed approaches. The code is available at https://github.com/haoxuanli-pku/KDD24-OME-DR.
3.6CVNov 16, 2025
Enhancing Neuro-Oncology Through Self-Assessing Deep Learning Models for Brain Tumor Unified Model for MRI SegmentationAndrew Zhou
Accurate segmentation of brain tumors is vital for diagnosis, surgical planning, and treatment monitoring. Deep learning has advanced on benchmarks, but two issues limit clinical use: no uncertainty estimates for errors and no segmentation of healthy brain structures around tumors for surgery. Current methods fail to unify tumor localization with anatomical context and lack confidence scores. This study presents an uncertainty-aware framework augmenting nnUNet with a channel for voxel-wise uncertainty. Trained on BraTS2023, it yields a correlation of 0.750 and RMSD of 0.047 for uncertainty without hurting tumor accuracy. It predicts uncertainty in one pass, with no extra networks or inferences, aiding clinical decisions. For whole-brain context, a unified model combines normal and cancer datasets, achieving a DSC of 0.81 for brain structures and 0.86 for tumor, with robust key-region performance. Combining both innovations gives the first model outputting tumor in natural surroundings plus an overlaid uncertainty map. Visual checks of outputs show uncertainty offers key insights to evaluate predictions and fix errors, helping informed surgical decisions from AI.
A Semi-Synthetic Dataset Generation Framework for Causal Inference in Recommender SystemsYan Lyu, Sunhao Dai, Peng Wu et al.
Accurate recommendation and reliable explanation are two key issues for modern recommender systems. However, most recommendation benchmarks only concern the prediction of user-item ratings while omitting the underlying causes behind the ratings. For example, the widely-used Yahoo!R3 dataset contains little information on the causes of the user-movie ratings. A solution could be to conduct surveys and require the users to provide such information. In practice, the user surveys can hardly avoid compliance issues and sparse user responses, which greatly hinders the exploration of causality-based recommendation. To better support the studies of causal inference and further explanations in recommender systems, we propose a novel semi-synthetic data generation framework for recommender systems where causal graphical models with missingness are employed to describe the causal mechanism of practical recommendation scenarios. To illustrate the use of our framework, we construct a semi-synthetic dataset with Causal Tags And Ratings (CTAR), based on the movies as well as their descriptive tags and rating information collected from a famous movie rating website. Using the collected data and the causal graph, the user-item-ratings and their corresponding user-item-tags are automatically generated, which provides the reasons (selected tags) why the user rates the items. Descriptive statistics and baseline results regarding the CTAR dataset are also reported. The proposed data generation framework is not limited to recommendation, and the released APIs can be used to generate customized datasets for other research tasks.
19.9IRJan 18, 2022
On the Opportunity of Causal Learning in Recommendation Systems: Foundation, Estimation, Prediction and ChallengesPeng Wu, Haoxuan Li, Yuhao Deng et al.
Recently, recommender system (RS) based on causal inference has gained much attention in the industrial community, as well as the states of the art performance in many prediction and debiasing tasks. Nevertheless, a unified causal analysis framework has not been established yet. Many causal-based prediction and debiasing studies rarely discuss the causal interpretation of various biases and the rationality of the corresponding causal assumptions. In this paper, we first provide a formal causal analysis framework to survey and unify the existing causal-inspired recommendation methods, which can accommodate different scenarios in RS. Then we propose a new taxonomy and give formal causal definitions of various biases in RS from the perspective of violating the assumptions adopted in causal analysis. Finally, we formalize many debiasing and prediction tasks in RS, and summarize the statistical and machine learning-based causal estimation methods, expecting to provide new research opportunities and perspectives to the causal RS community.
Prevent the Language Model from being Overconfident in Neural Machine TranslationMengqi Miao, Fandong Meng, Yijin Liu et al.
The Neural Machine Translation (NMT) model is essentially a joint language model conditioned on both the source sentence and partial translation. Therefore, the NMT model naturally involves the mechanism of the Language Model (LM) that predicts the next token only based on partial translation. Despite its success, NMT still suffers from the hallucination problem, generating fluent but inadequate translations. The main reason is that NMT pays excessive attention to the partial translation while neglecting the source sentence to some extent, namely overconfidence of the LM. Accordingly, we define the Margin between the NMT and the LM, calculated by subtracting the predicted probability of the LM from that of the NMT model for each token. The Margin is negatively correlated to the overconfidence degree of the LM. Based on the property, we propose a Margin-based Token-level Objective (MTO) and a Margin-based Sentencelevel Objective (MSO) to maximize the Margin for preventing the LM from being overconfident. Experiments on WMT14 English-to-German, WMT19 Chinese-to-English, and WMT14 English-to-French translation tasks demonstrate the effectiveness of our approach, with 1.36, 1.50, and 0.63 BLEU improvements, respectively, compared to the Transformer baseline. The human evaluation further verifies that our approaches improve translation adequacy as well as fluency.