Soumik Sarkar

Muhammad Arbab Arshad, Talukder Zaki Jubery, Tirtho Roy et al.

As Vision Language Models (VLMs) become increasingly accessible to farmers and agricultural experts, there is a growing need to evaluate their potential in specialized tasks. We present AgEval, a comprehensive benchmark for assessing VLMs' capabilities in plant stress phenotyping, offering a solution to the challenge of limited annotated data in agriculture. Our study explores how general-purpose VLMs can be leveraged for domain-specific tasks with only a few annotated examples, providing insights into their behavior and adaptability. AgEval encompasses 12 diverse plant stress phenotyping tasks, evaluating zero-shot and few-shot in-context learning performance of state-of-the-art models including Claude, GPT, Gemini, and LLaVA. Our results demonstrate VLMs' rapid adaptability to specialized tasks, with the best-performing model showing an increase in F1 scores from 46.24% to 73.37% in 8-shot identification. To quantify performance disparities across classes, we introduce metrics such as the coefficient of variation (CV), revealing that VLMs' training impacts classes differently, with CV ranging from 26.02% to 58.03%. We also find that strategic example selection enhances model reliability, with exact category examples improving F1 scores by 15.38% on average. AgEval establishes a framework for assessing VLMs in agricultural applications, offering valuable benchmarks for future evaluations. Our findings suggest that VLMs, with minimal few-shot examples, show promise as a viable alternative to traditional specialized models in plant stress phenotyping, while also highlighting areas for further refinement. Results and benchmark details are available at: https://github.com/arbab-ml/AgEval

Mahsa Khosravi, Matthew Carroll, Kai Liang Tan et al.

Agricultural production requires careful management of inputs such as fungicides, insecticides, and herbicides to ensure a successful crop that is high-yielding, profitable, and of superior seed quality. Current state-of-the-art field crop management relies on coarse-scale crop management strategies, where entire fields are sprayed with pest and disease-controlling chemicals, leading to increased cost and sub-optimal soil and crop management. To overcome these challenges and optimize crop production, we utilize machine learning tools within a virtual field environment to generate localized management plans for farmers to manage biotic threats while maximizing profits. Specifically, we present AgGym, a modular, crop and stress agnostic simulation framework to model the spread of biotic stresses in a field and estimate yield losses with and without chemical treatments. Our validation with real data shows that AgGym can be customized with limited data to simulate yield outcomes under various biotic stress conditions. We further demonstrate that deep reinforcement learning (RL) policies can be trained using AgGym for designing ultra-precise biotic stress mitigation strategies with potential to increase yield recovery with less chemicals and lower cost. Our proposed framework enables personalized decision support that can transform biotic stress management from being schedule based and reactive to opportunistic and prescriptive. We also release the AgGym software implementation as a community resource and invite experts to contribute to this open-sourced publicly available modular environment framework. The source code can be accessed at: https://github.com/SCSLabISU/AgGym.

Shivani Chiranjeevi, Mojdeh Sadaati, Zi K Deng et al.

Insect-pests significantly impact global agricultural productivity and quality. Effective management involves identifying the full insect community, including beneficial insects and harmful pests, to develop and implement integrated pest management strategies. Automated identification of insects under real-world conditions presents several challenges, including differentiating similar-looking species, intra-species dissimilarity and inter-species similarity, several life cycle stages, camouflage, diverse imaging conditions, and variability in insect orientation. A deep-learning model, InsectNet, is proposed to address these challenges. InsectNet is endowed with five key features: (a) utilization of a large dataset of insect images collected through citizen science; (b) label-free self-supervised learning for large models; (c) improving prediction accuracy for species with a small sample size; (d) enhancing model trustworthiness; and (e) democratizing access through streamlined MLOps. This approach allows accurate identification (>96% accuracy) of over 2500 insect species, including pollinator (e.g., butterflies, bees), parasitoid (e.g., some wasps and flies), predator species (e.g., lady beetles, mantises, dragonflies) and harmful pest species (e.g., armyworms, cutworms, grasshoppers, stink bugs). InsectNet can identify invasive species, provide fine-grained insect species identification, and work effectively in challenging backgrounds. It also can abstain from making predictions when uncertain, facilitating seamless human intervention and making it a practical and trustworthy tool. InsectNet can guide citizen science data collection, especially for invasive species where early detection is crucial. Similar approaches may transform other agricultural challenges like disease detection and underscore the importance of data collection, particularly through citizen science efforts..

Md Zahid Hasan, Jiajing Chen, Jiyang Wang et al.

Recognizing the activities causing distraction in real-world driving scenarios is critical for ensuring the safety and reliability of both drivers and pedestrians on the roadways. Conventional computer vision techniques are typically data-intensive and require a large volume of annotated training data to detect and classify various distracted driving behaviors, thereby limiting their efficiency and scalability. We aim to develop a generalized framework that showcases robust performance with access to limited or no annotated training data. Recently, vision-language models have offered large-scale visual-textual pretraining that can be adapted to task-specific learning like distracted driving activity recognition. Vision-language pretraining models, such as CLIP, have shown significant promise in learning natural language-guided visual representations. This paper proposes a CLIP-based driver activity recognition approach that identifies driver distraction from naturalistic driving images and videos. CLIP's vision embedding offers zero-shot transfer and task-based finetuning, which can classify distracted activities from driving video data. Our results show that this framework offers state-of-the-art performance on zero-shot transfer and video-based CLIP for predicting the driver's state on two public datasets. We propose both frame-based and video-based frameworks developed on top of the CLIP's visual representation for distracted driving detection and classification tasks and report the results.

Ethan Herron, Jaydeep Rade, Anushrut Jignasu et al.

Recent advances in generative modeling, namely Diffusion models, have revolutionized generative modeling, enabling high-quality image generation tailored to user needs. This paper proposes a framework for the generative design of structural components. Specifically, we employ a Latent Diffusion model to generate potential designs of a component that can satisfy a set of problem-specific loading conditions. One of the distinct advantages our approach offers over other generative approaches, such as generative adversarial networks (GANs), is that it permits the editing of existing designs. We train our model using a dataset of geometries obtained from structural topology optimization utilizing the SIMP algorithm. Consequently, our framework generates inherently near-optimal designs. Our work presents quantitative results that support the structural performance of the generated designs and the variability in potential candidate designs. Furthermore, we provide evidence of the scalability of our framework by operating over voxel domains with resolutions varying from $32^3$ to $128^3$. Our framework can be used as a starting point for generating novel near-optimal designs similar to topology-optimized designs.

Ronak Tali, Ali Rabeh, Cheng-Hau Yang et al.

Simulating fluid flow around arbitrary shapes is key to solving various engineering problems. However, simulating flow physics across complex geometries remains numerically challenging and computationally resource-intensive, particularly when using conventional PDE solvers. Machine learning methods offer attractive opportunities to create fast and adaptable PDE solvers. However, benchmark datasets to measure the performance of such methods are scarce, especially for flow physics across complex geometries. We introduce FlowBench, a dataset for neural simulators with over 10K samples, which is currently larger than any publicly available flow physics dataset. FlowBench contains flow simulation data across complex geometries (\textit{parametric vs. non-parametric}), spanning a range of flow conditions (\textit{Reynolds number and Grashoff number}), capturing a diverse array of flow phenomena (\textit{steady vs. transient; forced vs. free convection}), and for both 2D and 3D. FlowBench contains over 10K data samples, with each sample the outcome of a fully resolved, direct numerical simulation using a well-validated simulator framework designed for modeling transport phenomena in complex geometries. For each sample, we include velocity, pressure, and temperature field data at 3 different resolutions and several summary statistics features of engineering relevance (such as coefficients of lift and drag, and Nusselt numbers). %Additionally, we include masks and signed distance fields for each shape. We envision that FlowBench will enable evaluating the interplay between complex geometry, coupled flow phenomena, and data sufficiency on the performance of current, and future, neural PDE solvers. We enumerate several evaluation metrics to help rank order the performance of neural PDE solvers. We benchmark the performance of several baseline methods including FNO, CNO, WNO, and DeepONet.

Biswajit Khara, Ethan Herron, Zhanhong Jiang et al.

Neural network-based approaches for solving partial differential equations (PDEs) have recently received special attention. However, the large majority of neural PDE solvers only apply to rectilinear domains, and do not systematically address the imposition of Dirichlet/Neumann boundary conditions over irregular domain boundaries. In this paper, we present a framework to neurally solve partial differential equations over domains with irregularly shaped (non-rectilinear) geometric boundaries. Our network takes in the shape of the domain as an input (represented using an unstructured point cloud, or any other parametric representation such as Non-Uniform Rational B-Splines) and is able to generalize to novel (unseen) irregular domains; the key technical ingredient to realizing this model is a novel approach for identifying the interior and exterior of the computational grid in a differentiable manner. We also perform a careful error analysis which reveals theoretical insights into several sources of error incurred in the model-building process. Finally, we showcase a wide variety of applications, along with favorable comparisons with ground truth solutions.

Jiabin Lin, Xian Yeow Lee, Talukder Jubery et al.

Many physical systems have underlying safety considerations that require that the strategy deployed ensures the satisfaction of a set of constraints. Further, often we have only partial information on the state of the system. We study the problem of safe real-time decision making under uncertainty. In this paper, we formulate a conservative stochastic contextual bandit formulation for real-time decision making when an adversary chooses a distribution on the set of possible contexts and the learner is subject to certain safety/performance constraints. The learner observes only the context distribution and the exact context is unknown, and the goal is to develop an algorithm that selects a sequence of optimal actions to maximize the cumulative reward without violating the safety constraints at any time step. By leveraging the UCB algorithm for this setting, we propose a conservative linear UCB algorithm for stochastic bandits with context distribution. We prove an upper bound on the regret of the algorithm and show that it can be decomposed into three terms: (i) an upper bound for the regret of the standard linear UCB algorithm, (ii) a constant term (independent of time horizon) that accounts for the loss of being conservative in order to satisfy the safety constraint, and (ii) a constant term (independent of time horizon) that accounts for the loss for the contexts being unknown and only the distribution being known. To validate the performance of our approach we perform extensive simulations on synthetic data and on real-world maize data collected through the Genomes to Fields (G2F) initiative.

Jaydeep Rade, Soumik Sarkar, Anwesha Sarkar et al.

Recent developments in deep learning-based methods demonstrated its potential to predict the 3D protein structures using inputs such as protein sequences, Cryo-Electron microscopy (Cryo-EM) images of proteins, etc. However, these methods struggle to predict the protein complexes (PC), structures with more than one protein. In this work, we explore the atomic force microscope (AFM) assisted deep learning-based methods to predict the 3D structure of PCs. The images produced by AFM capture the protein structure in different and random orientations. These multi-view images can help train the neural network to predict the 3D structure of protein complexes. However, obtaining the dataset of actual AFM images is time-consuming and not a pragmatic task. We propose a virtual AFM imaging pipeline that takes a 'PDB' protein file and generates multi-view 2D virtual AFM images using volume rendering techniques. With this, we created a dataset of around 8K proteins. We train a neural network for 3D reconstruction called Pix2Vox++ using the synthesized multi-view 2D AFM images dataset. We compare the predicted structure obtained using a different number of views and get the intersection over union (IoU) value of 0.92 on the training dataset and 0.52 on the validation dataset. We believe this approach will lead to better prediction of the structure of protein complexes.

Zhanhong Jiang, Aditya Balu, Xian Yeow Lee et al.

Regret has been widely adopted as the metric of choice for evaluating the performance of online optimization algorithms for distributed, multi-agent systems. However, data/model variations associated with agents can significantly impact decisions and requires consensus among agents. Moreover, most existing works have focused on developing approaches for (either strongly or non-strongly) convex losses, and very few results have been obtained regarding regret bounds in distributed online optimization for general non-convex losses. To address these two issues, we propose a novel composite regret with a new network regret-based metric to evaluate distributed online optimization algorithms. We concretely define static and dynamic forms of the composite regret. By leveraging the dynamic form of our composite regret, we develop a consensus-based online normalized gradient (CONGD) approach for pseudo-convex losses, and it provably shows a sublinear behavior relating to a regularity term for the path variation of the optimizer. For general non-convex losses, we first shed light on the regret for the setting of distributed online non-convex learning based on recent advances such that no deterministic algorithm can achieve the sublinear regret. We then develop the distributed online non-convex optimization with composite regret (DINOCO) without access to the gradients, depending on an offline optimization oracle. DINOCO is shown to achieve sublinear regret; to our knowledge, this is the first regret bound for general distributed online non-convex learning.

Haoxiang Wang, Zhanhong Jiang, Chao Liu et al.

In the context of distributed deep learning, the issue of stale weights or gradients could result in poor algorithmic performance. This issue is usually tackled by delay tolerant algorithms with some mild assumptions on the objective functions and step sizes. In this paper, we propose a different approach to develop a new algorithm, called $\textbf{P}$redicting $\textbf{C}$lipping $\textbf{A}$synchronous $\textbf{S}$tochastic $\textbf{G}$radient $\textbf{D}$escent (aka, PC-ASGD). Specifically, PC-ASGD has two steps - the $\textit{predicting step}$ leverages the gradient prediction using Taylor expansion to reduce the staleness of the outdated weights while the $\textit{clipping step}$ selectively drops the outdated weights to alleviate their negative effects. A tradeoff parameter is introduced to balance the effects between these two steps. Theoretically, we present the convergence rate considering the effects of delay of the proposed algorithm with constant step size when the smooth objective functions are weakly strongly-convex and nonconvex. One practical variant of PC-ASGD is also proposed by adopting a condition to help with the determination of the tradeoff parameter. For empirical validation, we demonstrate the performance of the algorithm with two deep neural network architectures on two benchmark datasets.

Stefan Druc, Aditya Balu, Peter Wooldridge et al.

We explore the interpretability of 3D geometric deep learning models in the context of Computer-Aided Design (CAD). The field of parametric CAD can be limited by the difficulty of expressing high-level design concepts in terms of a few numeric parameters. In this paper, we use a deep learning architectures to encode high dimensional 3D shapes into a vectorized latent representation that can be used to describe arbitrary concepts. Specifically, we train a simple auto-encoder to parameterize a dataset of complex shapes. To understand the latent encoded space, we use the idea of Concept Activation Vectors (CAV) to reinterpret the latent space in terms of user-defined concepts. This allows modification of a reference design to exhibit more or fewer characteristics of a chosen concept or group of concepts. We also test the statistical significance of the identified concepts and determine the sensitivity of a physical quantity of interest across the dataset.

Stefan Druc, Peter Wooldridge, Adarsh Krishnamurthy et al.

Deep learning is becoming increasingly adopted in business and industry due to its ability to transform large quantities of data into high-performing models. These models, however, are generally regarded as black boxes, which, in spite of their performance, could prevent their use. In this context, the field of eXplainable AI attempts to develop techniques that temper the impenetrable nature of the models and promote a level of understanding of their behavior. Here we present our contribution to XAI methods in the form of a framework that we term SpecXAI, which is based on the spectral characterization of the entire network. We show how this framework can be used to not only understand the network but also manipulate it into a linear interpretable symbolic representation.

Tryambak Gangopadhyay, Somnath De, Qisai Liu et al.

Lean combustion is environment friendly with low NOx emissions and also provides better fuel efficiency in a combustion system. However, approaching towards lean combustion can make engines more susceptible to lean blowout. Lean blowout (LBO) is an undesirable phenomenon that can cause sudden flame extinction leading to sudden loss of power. During the design stage, it is quite challenging for the scientists to accurately determine the optimal operating limits to avoid sudden LBO occurrence. Therefore, it is crucial to develop accurate and computationally tractable frameworks for online LBO detection in low NOx emission engines. To the best of our knowledge, for the first time, we propose a deep learning approach to detect lean blowout in combustion systems. In this work, we utilize a laboratory-scale combustor to collect data for different protocols. We start far from LBO for each protocol and gradually move towards the LBO regime, capturing a quasi-static time series dataset at each condition. Using one of the protocols in our dataset as the reference protocol and with conditions annotated by domain experts, we find a transition state metric for our trained deep learning model to detect LBO in the other test protocols. We find that our proposed approach is more accurate and computationally faster than other baseline models to detect the transitions to LBO. Therefore, we recommend this method for real-time performance monitoring in lean combustion engines.

Jaydeep Rade, Ethan Herron, Soumik Sarkar et al.

Recent advancements in deep learning for predicting 3D protein structures have shown promise, particularly when leveraging inputs like protein sequences and Cryo-Electron microscopy (Cryo-EM) images. However, these techniques often fall short when predicting the structures of protein complexes (PCs), which involve multiple proteins. In our study, we investigate using atomic force microscopy (AFM) combined with deep learning to predict the 3D structures of PCs. AFM generates height maps that depict the PCs in various random orientations, providing a rich information for training a neural network to predict the 3D structures. We then employ the pre-trained UpFusion model (which utilizes a conditional diffusion model for synthesizing novel views) to train an instance-specific NeRF model for 3D reconstruction. The performance of UpFusion is evaluated through zero-shot predictions of 3D protein structures using AFM images. The challenge, however, lies in the time-intensive and impractical nature of collecting actual AFM images. To address this, we use a virtual AFM imaging process that transforms a `PDB' protein file into multi-view 2D virtual AFM images via volume rendering techniques. We extensively validate the UpFusion architecture using both virtual and actual multi-view AFM images. Our results include a comparison of structures predicted with varying numbers of views and different sets of views. This novel approach holds significant potential for enhancing the accuracy of protein complex structure predictions with further fine-tuning of the UpFusion network.

Shreyan Ganguly, Angona Biswas, Jaydeep Rade et al.

Foundation vision-language models (VLMs) excel on natural images, but their utility for biomedical microscopy remains underexplored. In this paper, we investigate how in-context learning enables state-of-the-art VLMs to perform few-shot object detection when large annotated datasets are unavailable, as is often the case with microscopic images. We introduce the Micro-OD benchmark, a curated collection of 252 images specifically curated for in-context learning, with bounding-box annotations spanning 11 cell types across four sources, including two in-lab expert-annotated sets. We systematically evaluate eight VLMs under few-shot conditions and compare variants with and without implicit test-time reasoning tokens. We further implement a hybrid Few-Shot Object Detection (FSOD) pipeline that combines a detection head with a VLM-based few-shot classifier, which enhances the few-shot performance of recent VLMs on our benchmark. Across datasets, we observe that zero-shot performance is weak due to the domain gap; however, few-shot support consistently improves detection, with marginal gains achieved after six shots. We observe that models with reasoning tokens are more effective for end-to-end localization, whereas simpler variants are more suitable for classifying pre-localized crops. Our results highlight in-context adaptation as a practical path for microscopy, and our benchmark provides a reproducible testbed for advancing open-vocabulary detection in biomedical imaging.

Qisai Liu, Alloy Das, Zhanhong Jiang et al.

Foundation models like the Segment Anything Model (SAM) demonstrate impressive zero-shot generalization but frequently degrade under diverse real-world illumination, particularly for instance segmentation. In this work, we address this limitation by developing \textit{Lighting Convolutional-Attention (\lca{})}, an adapter module that enhances segmentation robustness without fine-tuning the heavy backbone. \lca{} employs a dual-branch architecture to process RGB features alongside contrast maps, enabling physically motivated sensitivity to structural changes rather than illumination artifacts. We optimize \lca{} through a pairwise training strategy, introducing a targeted loss term that explicitly penalizes discrepancies between clean images and their corresponding illumination variants. To evaluate and support this architecture, we conduct a comprehensive empirical study across multiple existing benchmarks and present a novel Unity-based synthetic dataset specifically designed to accurately replicate complex real-world lighting conditions. Extensive experimental results demonstrate that our approach successfully bridges the domain gap, delivering superior lighting-robust segmentation.

Joshua R. Waite, Jiale Feng, Riley Tavassoli et al.

The increasing concern surrounding gun violence in the United States has led to a focus on developing systems to improve public safety. One approach to developing such a system is to detect and track shooters, which would help prevent or mitigate the impact of violent incidents. In this paper, we proposed detecting shooters as a whole, rather than just guns, which would allow for improved tracking robustness, as obscuring the gun would no longer cause the system to lose sight of the threat. However, publicly available data on shooters is much more limited and challenging to create than a gun dataset alone. Therefore, we explore the use of domain randomization and transfer learning to improve the effectiveness of training with synthetic data obtained from Unreal Engine environments. This enables the model to be trained on a wider range of data, increasing its ability to generalize to different situations. Using these techniques with YOLOv8 and Deep OC-SORT, we implemented an initial version of a shooter tracking system capable of running on edge hardware, including both a Raspberry Pi and a Jetson Nano.

Qisai Liu, Zhanhong Jiang, Joshua Russell Waite et al.

Offline reinforcement learning struggles with distributional shift and constrained performance due to static dataset limitations, while online RL demands prohibitive environment interactions. The recent advent of hybrid offline-to-online methods bridges these domains but suffers from distribution drift during transitions and catastrophic forgetting of offline knowledge. We introduce COOPO (Cyclic Offline-Online Policy Optimization), a generalized framework that repeatedly cycles between constrained offline training and online fine-tuning. Each cycle first anchors the policy to the dataset via KL-regularized advantage-weighted offline updates to minimize distributional shift and then fine-tunes it online using any policy optimization for stable exploration. Crucially, periodically returning to offline training eliminates forgetting and drift while maximizing dataset reuse. The cyclic behavior also helps reduce the online environment interactions. Theoretically, COOPO achieves better online sample efficiency, surpassing pure online RL, with guaranteed monotonic improvement under standard coverage assumptions. Extensive D4RL benchmarks demonstrate COOPO reduces online interactions versus state-of-the-art hybrids while improving final returns, maintaining robustness across diverse offline algorithms and online optimizers. This looped synergy sets new efficiency and performance standards for adaptive RL.

Qisai Liu, Zhanhong Jiang, Timilehin Ayanlade et al.

We propose Tabular Q-Learning (TabQL), a reinforcement learning framework that replaces the conventional parametric Q-network in Deep Q-Learning (DQN) with a tabular foundation model endowed with in-context learning capabilities. The key idea is to represent Q-values through a sequence-to-sequence foundation model operating over a tabularized representation of state-action-Q-value tuples, enabling rapid adaptation from limited online interaction by conditioning on recent experience. TabQL departs from classical DQN by leveraging (i) zero- or few-shot Q-value inference via in-context updates, and (ii) a warm-up phase using standard DQN to bootstrap high-quality context. Particularly, to enhance the context quality, new transitions are generated by executing actions output by TabQL with predicted Q values from DQN. We formalize TabQL, analyze its convergence and sample complexity under mild assumptions, and show that TabQL interpolates between vanilla Q-learning and DQN with in-context learning. Our analysis demonstrates that TabQL achieves improved efficiency compared to DQN by amortizing Bellman updates through in-context learning. Extensive numerical experiments with several benchmarks showcase the effectiveness and efficacy of the proposed TabQL.

Mojdeh Saadati, Juan Panelo, Gustavo Visentini et al.

Global food security depends on predicting crop responses to climate variability, yet process based crop models remain too computationally expensive for large scale exploration of genotype and environment interactions. Here we develop a probabilistic neural emulator of APSIM that reproduces key maize growth processes across 13 outputs with high fidelity (with R^2 of 0.93) while reducing simulation time by several orders of magnitude. Trained on two million simulations spanning diverse genetic, soil, and management conditions, and augmented with a convolutional synthetic weather generator that produces physically consistent climate sequences, the framework enables scalable exploration of crop responses under realistic and diverse environmental inputs while providing calibrated predictive uncertainty without costly Bayesian inference. Applying this framework across 100,000 trait configurations, six soil environments in Iowa and Illinois, and climate projections through the year 2100 under two emissions scenarios, we identify 181 maize trait combinations that consistently maintain high yield across all tested conditionsan analysis infeasible with the mechanistic model alone. We further show that radiation use efficiency and temperature driven root dynamics are dominant drivers of yield resilience. Notably, projected yield distributions vary substantially across locations, with some lower productivity sites exhibiting yield increases under future climate scenarios, indicating that climate change may reshape regional yield potential in nonintuitive ways. These results demonstrate how uncertainty aware emulation transforms mechanistic crop simulation from a computational bottleneck into an on demand discovery engine, one capable of interrogating the full genotype, environment and management space at a scale no process-based model can match.

Hossein Zaremehrjerdi, Shreyan Ganguly, Ashlyn Rairdin et al.

Agricultural decision-making involves complex, context-specific reasoning, where choices about crops, practices, and interventions depend heavily on geographic, climatic, and economic conditions. Traditional large language models (LLMs) often fall short in navigating this nuanced problem due to limited reasoning capacity. We hypothesize that recent advances in large reasoning models (LRMs) can better handle such structured, domain-specific inference. To investigate this, we introduce AgReason, the first expert-curated open-ended science benchmark with 100 questions for agricultural reasoning. Evaluations across thirteen open-source and proprietary models reveal that LRMs outperform conventional ones, though notable challenges persist, with the strongest Gemini-based baseline achieving 36% accuracy. We also present AgThoughts, a large-scale dataset of 44.6K question-answer pairs generated with human oversight and equipped with synthetically generated reasoning traces. Using AgThoughts, we develop AgThinker, a suite of small reasoning models that can be run on consumer-grade GPUs, and show that our dataset can be effective in unlocking agricultural reasoning abilities in LLMs. Our project page is here: https://baskargroup.github.io/Ag_reasoning/

Mozhgan Hadadi, Mehdi Saraeian, Jackson Godbersen et al.

This study introduces a robust framework for generating procedural 3D models of maize (Zea mays) plants from LiDAR point cloud data, offering a scalable alternative to traditional field-based phenotyping. Our framework leverages Non-Uniform Rational B-Spline (NURBS) surfaces to model the leaves of maize plants, combining Particle Swarm Optimization (PSO) for an initial approximation of the surface and a differentiable programming framework for precise refinement of the surface to fit the point cloud data. In the first optimization phase, PSO generates an approximate NURBS surface by optimizing its control points, aligning the surface with the LiDAR data, and providing a reliable starting point for refinement. The second phase uses NURBS-Diff, a differentiable programming framework, to enhance the accuracy of the initial fit by refining the surface geometry and capturing intricate leaf details. Our results demonstrate that, while PSO establishes a robust initial fit, the integration of differentiable NURBS significantly improves the overall quality and fidelity of the reconstructed surface. This hierarchical optimization strategy enables accurate 3D reconstruction of maize leaves across diverse genotypes, facilitating the subsequent extraction of complex traits like phyllotaxy. We demonstrate our approach on diverse genotypes of field-grown maize plants. All our codes are open-source to democratize these phenotyping approaches.

Muhammad Arbab Arshad, Tirtho Roy, Yanben Shen et al.

Plant disease diagnosis is critical for food security, yet training disease-recognition models that generalize across crops, pathogens, and field conditions remains challenging because labeled disease images are far less abundant and standardized than data for other biotic stresses such as insects or weeds. Frontier vision-language models offer new opportunities through improved visual reasoning, but they still struggle with fine-grained disease identification due to the lack of structured, crop-specific symptom knowledge. To address this gap, we curate the largest plant disease image--symptom dataset to date, covering 335 crops, 1{,}251 disease classes, and approximately 839K images, designed to support training-free, agentic disease prediction. A scalable automated pipeline generates source-grounded symptom descriptions in which each claim is linked to a verbatim web quote; domain experts validate sampled crops and reconcile disease-name variants across sources. As a baseline, we introduce an autonomous visual reasoning agent that identifies anatomical context, narrows candidate diseases using symptom knowledge, sequentially compares reference images, and produces a fully explainable reasoning trace. Incorporating symptom knowledge improves accuracy by 16.2 percentage points on average at the full reference budget, with consistent gains across all four evaluation crops. Because the framework only requires crop-specific reference images and symptom knowledge, it can be extended to new crops without retraining, while the agentic baseline can directly benefit from future improvements in foundation model capabilities. Dataset and code are available at:https://sage-dataset.github.io/.

Hsin-Jung Yang, Mahsa Khosravi, Benjamin Walt et al.

Soft continuum arms (SCAs) soft and deformable nature presents challenges in modeling and control due to their infinite degrees of freedom and non-linear behavior. This work introduces a reinforcement learning (RL)-based framework for visual servoing tasks on SCAs with zero-shot sim-to-real transfer capabilities, demonstrated on a single section pneumatic manipulator capable of bending and twisting. The framework decouples kinematics from mechanical properties using an RL kinematic controller for motion planning and a local controller for actuation refinement, leveraging minimal sensing with visual feedback. Trained entirely in simulation, the RL controller achieved a 99.8% success rate. When deployed on hardware, it achieved a 67% success rate in zero-shot sim-to-real transfer, demonstrating robustness and adaptability. This approach offers a scalable solution for SCAs in 3D visual servoing, with potential for further refinement and expanded applications.

Zhanhong Jiang, Md Zahid Hasan, Nastaran Saadati et al.

Stochastic optimization is a pivotal enabler in modern machine learning, producing effective models for various tasks. However, several existing works have shown that model parameters and gradient information are susceptible to privacy leakage. Although Differentially Private SGD (DPSGD) addresses privacy concerns, its static noise mechanism impacts the error bounds for model performance. Additionally, with the exponential increase in model parameters, efficient learning of these models using stochastic optimizers has become more challenging. To address these concerns, we introduce the Dynamically Differentially Private Projected SGD (D2P2-SGD) optimizer. In D2P2-SGD, we combine two important ideas: (i) dynamic differential privacy (DDP) with automatic gradient clipping and (ii) random projection with SGD, allowing dynamic adjustment of the tradeoff between utility and privacy of the model. It exhibits provably sub-linear convergence rates across different objective functions, matching the best available rate. The theoretical analysis further suggests that DDP leads to better utility at the cost of privacy, while random projection enables more efficient model learning. Extensive experiments across diverse datasets show that D2P2-SGD remarkably enhances accuracy while maintaining privacy. Our code is available here.

Qisai Liu, Zhanhong Jiang, Joshua R. Waite et al.

Sequence modeling is a critical yet challenging task with wide-ranging applications, especially in time series forecasting for domains like weather prediction, temperature monitoring, and energy load forecasting. Transformers, with their attention mechanism, have emerged as state-of-the-art due to their efficient parallel training, but they suffer from quadratic time complexity, limiting their scalability for long sequences. In contrast, recurrent neural networks (RNNs) offer linear time complexity, spurring renewed interest in linear RNNs for more computationally efficient sequence modeling. In this work, we introduce BLUR (Bidirectional Linear Unit for Recurrent network), which uses forward and backward linear recurrent units (LRUs) to capture both past and future dependencies with high computational efficiency. BLUR maintains the linear time complexity of traditional RNNs, while enabling fast parallel training through LRUs. Furthermore, it offers provably stable training and strong approximation capabilities, making it highly effective for modeling long-term dependencies. Extensive experiments on sequential image and time series datasets reveal that BLUR not only surpasses transformers and traditional RNNs in accuracy but also significantly reduces computational costs, making it particularly suitable for real-world forecasting tasks. Our code is available here.

Qisai Liu, Zhanhong Jiang, Hsin-Jung Yang et al.

Proximal policy optimization (PPO) is one of the most popular state-of-the-art on-policy algorithms that has become a standard baseline in modern reinforcement learning with applications in numerous fields. Though it delivers stable performance with theoretical policy improvement guarantees, high variance, and high sample complexity still remain critical challenges in on-policy algorithms. To alleviate these issues, we propose Hybrid-Policy Proximal Policy Optimization (HP3O), which utilizes a trajectory replay buffer to make efficient use of trajectories generated by recent policies. Particularly, the buffer applies the "first in, first out" (FIFO) strategy so as to keep only the recent trajectories to attenuate the data distribution drift. A batch consisting of the trajectory with the best return and other randomly sampled ones from the buffer is used for updating the policy networks. The strategy helps the agent to improve its capability on top of the most recent best performance and in turn reduce variance empirically. We theoretically construct the policy improvement guarantees for the proposed algorithm. HP3O is validated and compared against several baseline algorithms using multiple continuous control environments. Our code is available here.

Yasaman Esfandiari, Sin Yong Tan, Zhanhong Jiang et al.

Decentralized learning enables a group of collaborative agents to learn models using a distributed dataset without the need for a central parameter server. Recently, decentralized learning algorithms have demonstrated state-of-the-art results on benchmark data sets, comparable with centralized algorithms. However, the key assumption to achieve competitive performance is that the data is independently and identically distributed (IID) among the agents which, in real-life applications, is often not applicable. Inspired by ideas from continual learning, we propose Cross-Gradient Aggregation (CGA), a novel decentralized learning algorithm where (i) each agent aggregates cross-gradient information, i.e., derivatives of its model with respect to its neighbors' datasets, and (ii) updates its model using a projected gradient based on quadratic programming (QP). We theoretically analyze the convergence characteristics of CGA and demonstrate its efficiency on non-IID data distributions sampled from the MNIST and CIFAR-10 datasets. Our empirical comparisons show superior learning performance of CGA over existing state-of-the-art decentralized learning algorithms, as well as maintaining the improved performance under information compression to reduce peer-to-peer communication overhead. The code is available here on GitHub.

Lucas Nerone Rillo, Zhanhong Jiang, Nastaran Saadati et al.

We present Agentic Decentralized Knowledge Optimization (ADKO), a framework for collaborative black-box optimization across autonomous agents that achieves sample efficiency, privacy preservation, heterogeneous-objective handling, and communication efficiency. Each agent maintains a private Gaussian Process (GP) surrogate trained on local data and communicates only through knowledge tokens-compact, lossy summaries containing directional signals, advantage scores, and optional language-model (LM) insights-without sharing raw data or model parameters. ADKO unifies GP-Upper Confidence Bound (GP-UCB), parallel Bayesian optimization, decentralized learning, and LM-guided discovery. We provide the first formal analysis of dual information loss: token compression, quantified via mutual-information-based fidelity, and LM approximation error, decomposed into bias and stochastic noise. Our main result shows cumulative regret decomposes into GP error, LM bias, LM noise, and compression loss, with necessary and sufficient conditions for sublinear regret. We also propose fidelity-aware token pruning to preserve high-information tokens under memory budget. Experiments on neural architecture search and scientific discovery validate the theory and show consistent improvements over strong baselines.

Hsin-Jung Yang, Zhanhong Jiang, Prajwal Koirala et al.

Offline safe reinforcement learning (RL) is increasingly important for cyber-physical systems (CPS), where safety violations during training are unacceptable and only pre-collected data are available. Existing offline safe RL methods typically balance reward-safety tradeoffs through constraint relaxation or joint optimization, but they often lack structural mechanisms to prevent safety drift. We propose LexiSafe, a lexicographic offline RL framework designed to preserve safety-aligned behavior. We first develop LexiSafe-SC, a single-cost formulation for standard offline safe RL, and derive safety-violation and performance-suboptimality bounds that together yield sample-complexity guarantees. We then extend the framework to hierarchical safety requirements with LexiSafe-MC, which supports multiple safety costs and admits its own sample-complexity analysis. Empirically, LexiSafe demonstrates reduced safety violations and improved task performance compared to constrained offline baselines. By unifying lexicographic prioritization with structural bias, LexiSafe offers a practical and theoretically grounded approach for safety-critical CPS decision-making.

Muhammad Arbab Arshad, Talukder Jubery, James Afful et al.

We evaluate different Neural Radiance Fields (NeRFs) techniques for the 3D reconstruction of plants in varied environments, from indoor settings to outdoor fields. Traditional methods usually fail to capture the complex geometric details of plants, which is crucial for phenotyping and breeding studies. We evaluate the reconstruction fidelity of NeRFs in three scenarios with increasing complexity and compare the results with the point cloud obtained using LiDAR as ground truth. In the most realistic field scenario, the NeRF models achieve a 74.6% F1 score after 30 minutes of training on the GPU, highlighting the efficacy of NeRFs for 3D reconstruction in challenging environments. Additionally, we propose an early stopping technique for NeRF training that almost halves the training time while achieving only a reduction of 7.4% in the average F1 score. This optimization process significantly enhances the speed and efficiency of 3D reconstruction using NeRFs. Our findings demonstrate the potential of NeRFs in detailed and realistic 3D plant reconstruction and suggest practical approaches for enhancing the speed and efficiency of NeRFs in the 3D reconstruction process.

Sarah E. Jones, Timilehin Ayanlade, Benjamin Fallen et al.

Soybean production is susceptible to biotic and abiotic stresses, exacerbated by extreme weather events. Water limiting stress, i.e. drought, emerges as a significant risk for soybean production, underscoring the need for advancements in stress monitoring for crop breeding and production. This project combines multi-modal information to identify the most effective and efficient automated methods to investigate drought response. We investigated a set of diverse soybean accessions using multiple sensors in a time series high-throughput phenotyping manner to: (1) develop a pipeline for rapid classification of soybean drought stress symptoms, and (2) investigate methods for early detection of drought stress. We utilized high-throughput time-series phenotyping using UAVs and sensors in conjunction with machine learning (ML) analytics, which offered a swift and efficient means of phenotyping. The red-edge and green bands were most effective to classify canopy wilting stress. The Red-Edge Chlorophyll Vegetation Index (RECI) successfully differentiated susceptible and tolerant soybean accessions prior to visual symptom development. We report pre-visual detection of soybean wilting using a combination of different vegetation indices. These results can contribute to early stress detection methodologies and rapid classification of drought responses in screening nurseries for breeding and production applications.

Nastaran Saadati, Minh Pham, Nasla Saleem et al.

Recent advances in decentralized deep learning algorithms have demonstrated cutting-edge performance on various tasks with large pre-trained models. However, a pivotal prerequisite for achieving this level of competitiveness is the significant communication and computation overheads when updating these models, which prohibits the applications of them to real-world scenarios. To address this issue, drawing inspiration from advanced model merging techniques without requiring additional training, we introduce the Decentralized Iterative Merging-And-Training (DIMAT) paradigm--a novel decentralized deep learning framework. Within DIMAT, each agent is trained on their local data and periodically merged with their neighboring agents using advanced model merging techniques like activation matching until convergence is achieved. DIMAT provably converges with the best available rate for nonconvex functions with various first-order methods, while yielding tighter error bounds compared to the popular existing approaches. We conduct a comprehensive empirical analysis to validate DIMAT's superiority over baselines across diverse computer vision tasks sourced from multiple datasets. Empirical results validate our theoretical claims by showing that DIMAT attains faster and higher initial gain in accuracy with independent and identically distributed (IID) and non-IID data, incurring lower communication overhead. This DIMAT paradigm presents a new opportunity for the future decentralized learning, enhancing its adaptability to real-world with sparse and light-weight communication and computation.

Ali Rabeh, Ethan Herron, Aditya Balu et al.

Rapid and accurate simulations of fluid dynamics around complicated geometric bodies are critical in a variety of engineering and scientific applications, including aerodynamics and biomedical flows. However, while scientific machine learning (SciML) has shown considerable promise, most studies in this field are limited to simple geometries, and complex, real-world scenarios are underexplored. This paper addresses this gap by benchmarking diverse SciML models, including neural operators and vision transformer-based foundation models, for fluid flow prediction over intricate geometries. Using a high-fidelity dataset of steady-state flows across various geometries, we evaluate the impact of geometric representations -- Signed Distance Fields (SDF) and binary masks -- on model accuracy, scalability, and generalization. Central to this effort is the introduction of a novel, unified scoring framework that integrates metrics for global accuracy, boundary layer fidelity, and physical consistency to enable a robust, comparative evaluation of model performance. Our findings demonstrate that newer foundation models significantly outperform neural operators, particularly in data-limited scenarios, and that SDF representations yield superior results with sufficient training data. Despite these promises, all models struggle with out-of-distribution generalization, highlighting a critical challenge for future SciML applications. By advancing both evaluation models and modeling capabilities, our work paves the way for robust and scalable ML solutions for fluid dynamics across complex geometries.

Prajwal Koirala, Zhanhong Jiang, Soumik Sarkar et al.

In safe offline reinforcement learning (RL), the objective is to develop a policy that maximizes cumulative rewards while strictly adhering to safety constraints, utilizing only offline data. Traditional methods often face difficulties in balancing these constraints, leading to either diminished performance or increased safety risks. We address these issues with a novel approach that begins by learning a conservatively safe policy through the use of Conditional Variational Autoencoders, which model the latent safety constraints. Subsequently, we frame this as a Constrained Reward-Return Maximization problem, wherein the policy aims to optimize rewards while complying with the inferred latent safety constraints. This is achieved by training an encoder with a reward-Advantage Weighted Regression objective within the latent constraint space. Our methodology is supported by theoretical analysis, including bounds on policy performance and sample complexity. Extensive empirical evaluation on benchmark datasets, including challenging autonomous driving scenarios, demonstrates that our approach not only maintains safety compliance but also excels in cumulative reward optimization, surpassing existing methods. Additional visualizations provide further insights into the effectiveness and underlying mechanisms of our approach.

Vishesh Kumar Tanwar, Soumik Sarkar, Asheesh K. Singh et al.

To empower precision agriculture through distributed machine learning (DML), split learning (SL) has emerged as a promising paradigm, partitioning deep neural networks (DNNs) between edge devices and servers to reduce computational burdens and preserve data privacy. However, conventional SL frameworks' one-split-fits-all strategy is a critical limitation in agricultural ecosystems where edge insect monitoring devices exhibit vast heterogeneity in computational power, energy constraints, and connectivity. This leads to straggler bottlenecks, inefficient resource utilization, and compromised model performance. Bridging this gap, we introduce ReinDSplit, a novel reinforcement learning (RL)-driven framework that dynamically tailors DNN split points for each device, optimizing efficiency without sacrificing accuracy. Specifically, a Q-learning agent acts as an adaptive orchestrator, balancing workloads and latency thresholds across devices to mitigate computational starvation or overload. By framing split layer selection as a finite-state Markov decision process, ReinDSplit convergence ensures that highly constrained devices contribute meaningfully to model training over time. Evaluated on three insect classification datasets using ResNet18, GoogleNet, and MobileNetV2, ReinDSplit achieves 94.31% accuracy with MobileNetV2. Beyond agriculture, ReinDSplit pioneers a paradigm shift in SL by harmonizing RL for resource efficiency, privacy, and scalability in heterogeneous environments.

Prajwal Koirala, Zhanhong Jiang, Soumik Sarkar et al.

Safe offline reinforcement learning aims to learn policies that maximize cumulative rewards while adhering to safety constraints, using only offline data for training. A key challenge is balancing safety and performance, particularly when the policy encounters out-of-distribution (OOD) states and actions, which can lead to safety violations or overly conservative behavior during deployment. To address these challenges, we introduce Feasibility Informed Advantage Weighted Actor-Critic (FAWAC), a method that prioritizes persistent safety in constrained Markov decision processes (CMDPs). FAWAC formulates policy optimization with feasibility conditions derived specifically for offline datasets, enabling safe policy updates in non-parametric policy space, followed by projection into parametric space for constrained actor training. By incorporating a cost-advantage term into Advantage Weighted Regression (AWR), FAWAC ensures that the safety constraints are respected while maximizing performance. Additionally, we propose a strategy to address a more challenging class of problems that involves tempting datasets where trajectories are predominantly high-rewarded but unsafe. Empirical evaluations on standard benchmarks demonstrate that FAWAC achieves strong results, effectively balancing safety and performance in learning policies from the static datasets.

Jiale Feng, Samuel W. Blair, Timilehin Ayanlade et al.

We present a novel method for soybean (Glycine max (L.) Merr.) yield estimation leveraging high throughput seed counting via computer vision and deep learning techniques. Traditional methods for collecting yield data are labor-intensive, costly, prone to equipment failures at critical data collection times, and require transportation of equipment across field sites. Computer vision, the field of teaching computers to interpret visual data, allows us to extract detailed yield information directly from images. By treating it as a computer vision task, we report a more efficient alternative, employing a ground robot equipped with fisheye cameras to capture comprehensive videos of soybean plots from which images are extracted in a variety of development programs. These images are processed through the P2PNet-Yield model, a deep learning framework where we combined a Feature Extraction Module (the backbone of the P2PNet-Soy) and a Yield Regression Module to estimate seed yields of soybean plots. Our results are built on three years of yield testing plot data - 8500 in 2021, 2275 in 2022, and 650 in 2023. With these datasets, our approach incorporates several innovations to further improve the accuracy and generalizability of the seed counting and yield estimation architecture, such as the fisheye image correction and data augmentation with random sensor effects. The P2PNet-Yield model achieved a genotype ranking accuracy score of up to 83%. It demonstrates up to a 32% reduction in time to collect yield data as well as costs associated with traditional yield estimation, offering a scalable solution for breeding programs and agricultural productivity enhancement.

Yanben Shen, Timilehin T. Ayanlade, Venkata Naresh Boddepalli et al.

Early identification of weeds is essential for effective management and control, and there is growing interest in automating the process using computer vision techniques coupled with AI methods. However, challenges associated with training AI-based weed identification models, such as limited expert-verified data and complexity and variability in morphological features, have hindered progress. To address these issues, we present WeedNet, the first global-scale weed identification model capable of recognizing an extensive set of weed species, including noxious and invasive plant species. WeedNet is an end-to-end real-time weed identification pipeline and uses self-supervised learning, fine-tuning, and enhanced trustworthiness strategies. WeedNet achieved 91.02% accuracy across 1,593 weed species, with 41% species achieving 100% accuracy. Using a fine-tuning strategy and a Global-to-Local approach, the local Iowa WeedNet model achieved an overall accuracy of 97.38% for 85 Iowa weeds, most classes exceeded a 90% mean accuracy per class. Testing across intra-species dissimilarity (developmental stages) and inter-species similarity (look-alike species) suggests that diversity in the images collected, spanning all the growth stages and distinguishable plant characteristics, is crucial in driving model performance. The generalizability and adaptability of the Global WeedNet model enable it to function as a foundational model, with the Global-to-Local strategy allowing fine-tuning for region-specific weed communities. Additional validation of drone- and ground-rover-based images highlights the potential of WeedNet for integration into robotic platforms. Furthermore, integration with AI for conversational use provides intelligent agricultural and ecological conservation consulting tools for farmers, agronomists, researchers, land managers, and government agencies across diverse landscapes.

Souradeep Chattopadhyay, Guillermo Basulto-Elias, Jun Ha Chang et al.

Understanding the relationship between mild cognitive impairment (MCI) and driving behavior is essential for enhancing road safety, particularly among older adults. This study introduces a novel approach by incorporating specific trip destinations-such as home, work, medical appointments, social activities, and errands-using geohashing to analyze the driving habits of older drivers in Nebraska. We employed a two-fold methodology that combines data visualization with advanced machine learning models, including C5.0, Random Forest, and Support Vector Machines, to assess the effectiveness of these location-based variables in predicting cognitive impairment. Notably, the C5.0 model showed a robust and stable performance, achieving a median recall of 0.68, which indicates that our methodology accurately identifies cognitive impairment in drivers 68\% of the time. This emphasizes our model's capacity to reduce false negatives, a crucial factor given the profound implications of failing to identify impaired drivers. Our findings underscore the innovative use of life-space variables in understanding and predicting cognitive decline, offering avenues for early intervention and tailored support for affected individuals.

Mahsa Khosravi, Zhanhong Jiang, Joshua R Waite et al.

This paper presents a novel reinforcement learning (RL)-based planning scheme for optimized robotic management of biotic stresses in precision agriculture. The framework employs a hierarchical decision-making structure with conditional action masking, where high-level actions direct the robot's exploration, while low-level actions optimize its navigation and efficient chemical spraying in affected areas. The key objectives of optimization include improving the coverage of infected areas with limited battery power and reducing chemical usage, thus preventing unnecessary spraying of healthy areas of the field. Our numerical experimental results demonstrate that the proposed method, Hierarchical Action Masking Proximal Policy Optimization (HAM-PPO), significantly outperforms baseline practices, such as LawnMower navigation + indiscriminate spraying (Carpet Spray), in terms of yield recovery and resource efficiency. HAM-PPO consistently achieves higher yield recovery percentages and lower chemical costs across a range of infection scenarios. The framework also exhibits robustness to observation noise and generalizability under diverse environmental conditions, adapting to varying infection ranges and spatial distribution patterns.

Joshua R. Waite, Md. Zahid Hasan, Qisai Liu et al.

Vision-language model (VLM) fine-tuning for application-specific visual grounding based on natural language instructions has become one of the most popular approaches for learning-enabled autonomous systems. However, such fine-tuning relies heavily on high-quality datasets to achieve successful performance in various downstream tasks. Additionally, VLMs often encounter limitations due to insufficient and imbalanced fine-tuning data. To address these issues, we propose a new generalizable framework to improve VLM fine-tuning by integrating it with a reinforcement learning (RL) agent. Our method utilizes the RL agent to manipulate objects within an indoor setting to create synthetic data for fine-tuning to address certain vulnerabilities of the VLM. Specifically, we use the performance of the VLM to provide feedback to the RL agent to generate informative data that efficiently fine-tune the VLM over the targeted task (e.g. spatial reasoning). The key contribution of this work is developing a framework where the RL agent serves as an informative data sampling tool and assists the VLM in order to enhance performance and address task-specific vulnerabilities. By targeting the data sampling process to address the weaknesses of the VLM, we can effectively train a more context-aware model. In addition, generating synthetic data allows us to have precise control over each scene and generate granular ground truth captions. Our results show that the proposed data generation approach improves the spatial reasoning performance of VLMs, which demonstrates the benefits of using RL-guided data generation in vision-language tasks.

Anushrut Jignasu, Ethan Herron, Zhanhong Jiang et al.

We present STITCH, a novel approach for neural implicit surface reconstruction of a sparse and irregularly spaced point cloud while enforcing topological constraints (such as having a single connected component). We develop a new differentiable framework based on persistent homology to formulate topological loss terms that enforce the prior of a single 2-manifold object. Our method demonstrates excellent performance in preserving the topology of complex 3D geometries, evident through both visual and empirical comparisons. We supplement this with a theoretical analysis, and provably show that optimizing the loss with stochastic (sub)gradient descent leads to convergence and enables reconstructing shapes with a single connected component. Our approach showcases the integration of differentiable topological data analysis tools for implicit surface reconstruction.

Timilehin T. Ayanlade, Anirudha Powadi, Talukder Z. Jubery et al.

Recent advances in plant phenotyping have driven widespread adoption of multi sensor platforms for collecting crop canopy reflectance data. This includes the collection of heterogeneous data across multiple platforms, with Unmanned Aerial Vehicles (UAV) seeing significant usage due to their high performance in crop monitoring, forecasting, and prediction tasks. Similarly, satellite missions have been shown to be effective for agriculturally relevant tasks. In contrast to UAVs, such missions are bound to the limitation of spatial resolution, which hinders their effectiveness for modern farming systems focused on micro-plot management. In this work, we propose a cross modal learning strategy that enriches high-resolution satellite imagery with UAV level visual detail for crop canopy trait estimation. Using a dataset of approximately co registered satellite UAV image pairs collected from replicated plots of 84 hybrid maize varieties across five distinct locations in the U.S. Corn Belt, we train a model that learns fine grained spectral spatial correspondences between sensing modalities. Results show that the generated UAV-like representations from satellite inputs consistently outperform real satellite imagery on multiple downstream tasks, including yield and nitrogen prediction, demonstrating the potential of cross-modal correspondence learning to bridge the gap between satellite and UAV sensing in agricultural monitoring.

Jaydeep Rade, Md Hasibul Hasan Hasib, Meric Ozturk et al.

AI-based in silico methods have improved protein structure prediction but often struggle with large protein complexes (PCs) involving multiple interacting proteins due to missing 3D spatial cues. Experimental techniques like Cryo-EM are accurate but costly and time-consuming. We present ProFusion, a hybrid framework that integrates a deep learning model with Atomic Force Microscopy (AFM), which provides high-resolution height maps from random orientations, naturally yielding multi-view data for 3D reconstruction. However, generating a large-scale AFM imaging data set sufficient to train deep learning models is impractical. Therefore, we developed a virtual AFM framework that simulates the imaging process and generated a dataset of ~542,000 proteins with multi-view synthetic AFM images. We train a conditional diffusion model to synthesize novel views from unposed inputs and an instance-specific Neural Radiance Field (NeRF) model to reconstruct 3D structures. Our reconstructed 3D protein structures achieve an average Chamfer Distance within the AFM imaging resolution, reflecting high structural fidelity. Our method is extensively validated on experimental AFM images of various PCs, demonstrating strong potential for accurate, cost-effective protein complex structure prediction and rapid iterative validation using AFM experiments.

Zhanhong Jiang, Dylan Shah, Hsin-Jung Yang et al.

Precise kinematic modeling is critical in calibration and controller design for soft robots, yet remains a challenging issue due to their highly nonlinear and complex behaviors. To tackle the issue, numerous data-driven machine learning approaches have been proposed for modeling nonlinear dynamics. However, these models suffer from prediction uncertainty that can negatively affect modeling accuracy, and uncertainty quantification for kinematic modeling in soft robots is underexplored. In this work, using limited simulation and real-world data, we first investigate multiple linear and nonlinear machine learning models commonly used for kinematic modeling of soft robots. The results reveal that nonlinear ensemble methods exhibit the most robust generalization performance. We then develop a conformal kinematic modeling framework for soft robots by utilizing split conformal prediction to quantify predictive position uncertainty, ensuring distribution-free prediction intervals with a theoretical guarantee.

Md Zahid Hasan, Guillermo Basulto-Elias, Jun Ha Chang et al.

We introduce scenario-based cognitive status identification in older drivers from naturalistic driving videos, leveraging large vision models. In recent times, cognitive decline including Dementia and Mild Cognitive Impairment (MCI), is often underdiagnosed due to the time-consuming and costly nature of current diagnostic methods. By analyzing real-world driving behavior captured through in-vehicle sensors, this study aims to extract "digital fingerprints" that correlate with functional decline and clinical features of dementia. Moreover, modern large vision models can draw meaningful insights from everyday driving patterns across different roadway scenarios to early detect cognitive decline. We propose a framework that uses large vision models and naturalistic driving videos to analyze driver behavior, identify cognitive status and predict disease progression. We leverage the strong relationship between real-world driving behavior as an observation of the current cognitive status of the drivers where the vehicle can be utilized as a "diagnostic tool". Our method identifies early warning signs of functional impairment, contributing to proactive intervention strategies. This work enhances early detection and supports the development of scalable, non-invasive monitoring systems to mitigate the growing societal and economic burden of cognitive decline in the aging population.

Shivani Chiranjeevi, Hossein Zaremehrjerdi, Zi K. Deng et al.

The rapid global loss of biodiversity, particularly among insects, represents an urgent ecological crisis. Current methods for insect species discovery are manual, slow, and severely constrained by taxonomic expertise, hindering timely conservation actions. We introduce TerraIncognita, a dynamic benchmark designed to evaluate state-of-the-art multimodal models for the challenging problem of identifying unknown, potentially undescribed insect species from image data. Our benchmark dataset combines a mix of expertly annotated images of insect species likely known to frontier AI models, and images of rare and poorly known species, for which few/no publicly available images exist. These images were collected from underexplored biodiversity hotspots, realistically mimicking open-world discovery scenarios faced by ecologists. The benchmark assesses models' proficiency in hierarchical taxonomic classification, their capability to detect and abstain from out-of-distribution (OOD) samples representing novel species, and their ability to generate explanations aligned with expert taxonomic knowledge. Notably, top-performing models achieve over 90\% F1 at the Order level on known species, but drop below 2\% at the Species level, highlighting the sharp difficulty gradient from coarse to fine taxonomic prediction (Order $\rightarrow$ Family $\rightarrow$ Genus $\rightarrow$ Species). TerraIncognita will be updated regularly, and by committing to quarterly dataset expansions (of both known and novel species), will provide an evolving platform for longitudinal benchmarking of frontier AI methods. All TerraIncognita data, results, and future updates are available \href{https://baskargroup.github.io/TerraIncognita/}{here}.

Nastaran Saadati, Zhanhong Jiang, Joshua R. Waite et al.

Low-Rank Adaptation (LoRA) has emerged as one of the most effective, computationally tractable fine-tuning approaches for training Vision-Language Models (VLMs) and Large Language Models (LLMs). LoRA accomplishes this by freezing the pre-trained model weights and injecting trainable low-rank matrices, allowing for efficient learning of these foundation models even on edge devices. However, LoRA in decentralized settings still remains under explored, particularly for the theoretical underpinnings due to the lack of smoothness guarantee and model consensus interference (defined formally below). This work improves the convergence rate of decentralized LoRA (DLoRA) to match the rate of decentralized SGD by ensuring gradient smoothness. We also introduce DeCAF, a novel algorithm integrating DLoRA with truncated singular value decomposition (TSVD)-based matrix factorization to resolve consensus interference. Theoretical analysis shows TSVD's approximation error is bounded and consensus differences between DLoRA and DeCAF vanish as rank increases, yielding DeCAF's matching convergence rate. Extensive experiments across vision/language tasks demonstrate our algorithms outperform local training and rivals federated learning under both IID and non-IID data distributions.