Jinhong Yu

Yang Wu, Jinhong Yu, Jingwei Xiong et al.

The integration of Large Language Models (LLMs) into scientific workflows presents exciting opportunities to accelerate biomedical discovery. However, the reactive nature of LLMs, which respond only when prompted, limits their effectiveness in collaborative settings that demand foresight and autonomous engagement. In this study, we introduce CoLabScience, a proactive LLM assistant designed to enhance biomedical collaboration between AI systems and human experts through timely, context-aware interventions. At the core of our method is PULI (Positive-Unlabeled Learning-to-Intervene), a novel framework trained with a reinforcement learning objective to determine when and how to intervene in streaming scientific discussions, by leveraging the team's project proposal and long- and short-term conversational memory. To support this work, we introduce BSDD (Biomedical Streaming Dialogue Dataset), a new benchmark of simulated research discussion dialogues with intervention points derived from PubMed articles. Experimental results show that PULI significantly outperforms existing baselines in both intervention precision and collaborative task utility, highlighting the potential of proactive LLMs as intelligent scientific assistants.

Yang Wu, Huayi Zhang, Yizheng Jiao et al.

Instruction tuning has underscored the significant potential of large language models (LLMs) in producing more human controllable and effective outputs in various domains. In this work, we focus on the data selection problem for task-specific instruction tuning of LLMs. Prevailing methods primarily rely on the crafted similarity metrics to select training data that aligns with the test data distribution. The goal is to minimize instruction tuning loss on the test data, ultimately improving performance on the target task. However, it has been widely observed that instruction tuning loss (i.e., cross-entropy loss for next token prediction) in LLMs often fails to exhibit a monotonic relationship with actual task performance. This misalignment undermines the effectiveness of current data selection methods for task-specific instruction tuning. To address this issue, we introduce ROSE, a novel Reward-Oriented inStruction data sElection method which leverages pairwise preference loss as a reward signal to optimize data selection for task-specific instruction tuning. Specifically, ROSE adapts an influence formulation to approximate the influence of training data points relative to a few-shot preference validation set to select the most task-related training data points. Experimental results show that by selecting just 5\% of the training data using ROSE, our approach can achieve competitive results compared to fine-tuning with the full training dataset, and it surpasses other state-of-the-art data selection methods for task-specific instruction tuning. Our qualitative analysis further confirms the robust generalizability of our method across multiple benchmark datasets and diverse model architectures.

Yang Wu, Raha Moraffah, Rujing Yao et al.

Large Language Models (LLMs) have demonstrated an impressive level of general knowledge. However, they often struggle in highly specialized and cost-sensitive domains such as drug discovery and rare disease research due to the lack of expert knowledge. In this paper, we propose a novel framework (PU-ADKA) designed to efficiently enhance domain-specific LLMs by actively engaging domain experts within a fixed budget. Unlike traditional fine-tuning approaches, PU-ADKA selectively identifies and queries the most appropriate expert from a team, taking into account each expert's availability, knowledge boundaries, and consultation costs. We train PU-ADKA using simulations on PubMed data and validate it through both controlled expert interactions and real-world deployment with a drug development team, demonstrating its effectiveness in enhancing LLM performance in specialized domains under strict budget constraints. In addition to outlining our methodological innovations and experimental results, we introduce a new benchmark dataset, CKAD, for cost-effective LLM domain knowledge acquisition to foster further research in this challenging area.