3.3DLSep 10, 2024
Fine-tuning and Prompt Engineering with Cognitive Knowledge Graphs for Scholarly Knowledge OrganizationGollam Rabby, Sören Auer, Jennifer D'Souza et al.
The increasing amount of published scholarly articles, exceeding 2.5 million yearly, raises the challenge for researchers in following scientific progress. Integrating the contributions from scholarly articles into a novel type of cognitive knowledge graph (CKG) will be a crucial element for accessing and organizing scholarly knowledge, surpassing the insights provided by titles and abstracts. This research focuses on effectively conveying structured scholarly knowledge by utilizing large language models (LLMs) to categorize scholarly articles and describe their contributions in a structured and comparable manner. While previous studies explored language models within specific research domains, the extensive domain-independent knowledge captured by LLMs offers a substantial opportunity for generating structured contribution descriptions as CKGs. Additionally, LLMs offer customizable pathways through prompt engineering or fine-tuning, thus facilitating to leveraging of smaller LLMs known for their efficiency, cost-effectiveness, and environmental considerations. Our methodology involves harnessing LLM knowledge, and complementing it with domain expert-verified scholarly data sourced from a CKG. This strategic fusion significantly enhances LLM performance, especially in tasks like scholarly article categorization and predicate recommendation. Our method involves fine-tuning LLMs with CKG knowledge and additionally injecting knowledge from a CKG with a novel prompting technique significantly increasing the accuracy of scholarly knowledge extraction. We integrated our approach in the Open Research Knowledge Graph (ORKG), thus enabling precise access to organized scholarly knowledge, crucially benefiting domain-independent scholarly knowledge exchange and dissemination among policymakers, industrial practitioners, and the general public.
11.3LGMay 15
MLReplicate: Benchmarking Autonomous Research Systems for Machine Learning ReproducibilitySasi Kiran Gaddipati, Diyana Muhammed, Farhana Keya et al.
Autonomous research systems capable of generating complete scientific manuscripts have advanced rapidly, yet robust and realistic evaluation frameworks have failed to keep pace. To bridge this gap, we introduce MLReplicate, an end-to-end benchmark evaluating autonomous research systems on machine learning reproducibility. The benchmark was constructed from ICML 2025 outstanding papers reformulated into standardized input specifications and evaluated across 6 state-of-the-art research systems: AI SCIENTIST-V1, AI SCIENTIST-V2, AGENT LABORATORY, CYCLERESEARCHER, AI RESEARCHER, and TINY SCIENTIST, yielding 45 generated manuscripts, with 3 failed experiments. Outputs are assessed using a dual-protocol approach that combines automated conference-style review and structured expert human evaluation, while tracking computational cost, runtime, and the amount of required human intervention. The automated conference-style review accepted 10 out of 37 valid submissions. An additional 8 submissions were desk-rejected before review for failing to meet the minimum page threshold. In contrast to automated reviews, human reviewers consistently identified methodological flaws, hallucinated experimental results, and reproducibility failures across all systems, and 59% of accepted automated reviews contained fabricated or unsupported claims. We further find that neither token budget nor computational cost predicts output quality: the cheapest system outperforms the most resource-intensive system in human evaluation, despite a 38-fold difference in input tokens. We thus demonstrate that autonomous research workflow design matters more than the scale of compute. MLReplicate exposes a substantial gap between current autonomous research systems and genuine scientific rigor, and establishes a practical, extensible evaluation framework for systematic progress toward trustworthy AI-driven scientific discovery.
5.8AISep 14, 2025Code
AIssistant: An Agentic Approach for Human--AI Collaborative Scientific Work on Reviews and Perspectives in Machine LearningSasi Kiran Gaddipati, Farhana Keya, Gollam Rabby et al.
Advances in AI-assisted research have introduced powerful tools for literature retrieval, hypothesis generation, experimentation, and manuscript preparation. However, systems remain fragmented and lack human-centred workflows. To address these gaps, we introduce AIssistant, an agentic, open-source Human-AI collaborative framework designed to simplify the end-to-end creation of scientific workflows. Since our development is still in an early stage, we present here the first experiments with AIssistant for perspective and review research papers in machine learning. Our system integrates modular tools and agents for literature synthesis, section-wise experimentation, citation management, and automatic LaTeX paper text generation, while maintaining human oversight at every stage to ensure accuracy, coherence, and scholarly rigour. We conducted a comprehensive evaluation across three layers: (1) Independent Human Review, following NeurIPS double-blind standards; (2) Automated LLM Review, using GPT-5 as a scalable human review proxy; and (3) Program Chair Oversight, where the chair monitors the entire review process and makes final validation and acceptance decisions. The results demonstrate that AIssistant improves drafting efficiency and thematic consistency. Nonetheless, Human-AI collaboration remains essential for maintaining factual correctness, methodological soundness, and ethical compliance. Despite its effectiveness, we identify key limitations, including hallucinated citations, difficulty adapting to dynamic paper structures, and incomplete integration of multimodal content.
4.1LGFeb 26, 2025Code
Project Alexandria: Towards Freeing Scientific Knowledge from Copyright Burdens via LLMsChristoph Schuhmann, Gollam Rabby, Ameya Prabhu et al.
Paywalls, licenses and copyright rules often restrict the broad dissemination and reuse of scientific knowledge. We take the position that it is both legally and technically feasible to extract the scientific knowledge in scholarly texts. Current methods, like text embeddings, fail to reliably preserve factual content, and simple paraphrasing may not be legally sound. We propose a new idea for the community to adopt: convert scholarly documents into knowledge preserving, but style agnostic representations we term Knowledge Units using LLMs. These units use structured data capturing entities, attributes and relationships without stylistic content. We provide evidence that Knowledge Units (1) form a legally defensible framework for sharing knowledge from copyrighted research texts, based on legal analyses of German copyright law and U.S. Fair Use doctrine, and (2) preserve most (~95\%) factual knowledge from original text, measured by MCQ performance on facts from the original copyrighted text across four research domains. Freeing scientific knowledge from copyright promises transformative benefits for scientific research and education by allowing language models to reuse important facts from copyrighted text. To support this, we share open-source tools for converting research documents into Knowledge Units. Overall, our work posits the feasibility of democratizing access to scientific knowledge while respecting copyright.
MC-NEST: Enhancing Mathematical Reasoning in Large Language Models leveraging a Monte Carlo Self-Refine TreeGollam Rabby, Farhana Keya, Sören Auer
Mathematical reasoning presents significant challenges for large language models (LLMs). To enhance their capabilities, we propose Monte Carlo Self-Refine Tree (MC-NEST), an extension of Monte Carlo Tree Search that integrates LLM-based self-refinement and self-evaluation for improved decision-making in complex reasoning tasks. MC-NEST balances exploration and exploitation using Upper Confidence Bound (UCT) scores combined with diverse selection policies. Through iterative critique and refinement, LLMs learn to reason more strategically. Empirical results demonstrate that MC-NEST with an importance sampling policy substantially improves GPT-4o's performance, achieving state-of-the-art pass@1 scores on Olympiad-level benchmarks. Specifically, MC-NEST attains a pass@1 of 38.6 on AIME and 12.6 on MathOdyssey. The solution quality for MC-NEST using GPT-4o and Phi-3-mini reaches 84.0\% and 82.08\%, respectively, indicating robust consistency across different LLMs. MC-NEST performs strongly across Algebra, Geometry, and Number Theory, benefiting from its ability to handle abstraction, logical deduction, and multi-step reasoning -- core skills in mathematical problem solving.
12.0CLFeb 3, 2025
SelfCheckAgent: Zero-Resource Hallucination Detection in Generative Large Language ModelsDiyana Muhammed, Gollam Rabby, Sören Auer
Detecting hallucinations in Large Language Models (LLMs) remains a critical challenge for their reliable deployment in real-world applications. To address this, we introduce SelfCheckAgent, a novel framework integrating three different agents: the Symbolic Agent, the Specialized Detection Agent, and the Contextual Consistency Agent. These agents provide a robust multi-dimensional approach to hallucination detection. Notable results include the Contextual Consistency Agent leveraging Llama 3.1 with Chain-of-Thought (CoT) to achieve outstanding performance on the WikiBio dataset, with NonFactual hallucination detection scoring 93.64%, Factual 70.26%, and Ranking 78.48% respectively. On the AIME dataset, GPT-4o with CoT excels in NonFactual detection with 94.89% but reveals trade-offs in Factual with 30.58% and Ranking with 30.68%, underscoring the complexity of hallucination detection in the complex mathematical domains. The framework also incorporates a triangulation strategy, which increases the strengths of the SelfCheckAgent, yielding significant improvements in real-world hallucination identification. The comparative analysis demonstrates SelfCheckAgent's applicability across diverse domains, positioning it as a crucial advancement for trustworthy LLMs. These findings highlight the potentiality of consistency-driven methodologies in detecting hallucinations in LLMs.
6.7CLJun 11, 2025
EmoNet-Voice: A Fine-Grained, Expert-Verified Benchmark for Speech Emotion DetectionChristoph Schuhmann, Robert Kaczmarczyk, Gollam Rabby et al.
The advancement of text-to-speech and audio generation models necessitates robust benchmarks for evaluating the emotional understanding capabilities of AI systems. Current speech emotion recognition (SER) datasets often exhibit limitations in emotional granularity, privacy concerns, or reliance on acted portrayals. This paper introduces EmoNet-Voice, a new resource for speech emotion detection, which includes EmoNet-Voice Big, a large-scale pre-training dataset (featuring over 4,500 hours of speech across 11 voices, 40 emotions, and 4 languages), and EmoNet-Voice Bench, a novel benchmark dataset with human expert annotations. EmoNet-Voice is designed to evaluate SER models on a fine-grained spectrum of 40 emotion categories with different levels of intensities. Leveraging state-of-the-art voice generation, we curated synthetic audio snippets simulating actors portraying scenes designed to evoke specific emotions. Crucially, we conducted rigorous validation by psychology experts who assigned perceived intensity labels. This synthetic, privacy-preserving approach allows for the inclusion of sensitive emotional states often absent in existing datasets. Lastly, we introduce Empathic Insight Voice models that set a new standard in speech emotion recognition with high agreement with human experts. Our evaluations across the current model landscape exhibit valuable findings, such as high-arousal emotions like anger being much easier to detect than low-arousal states like concentration.
1.0CLOct 29, 2024
NeuroSym-BioCAT: Leveraging Neuro-Symbolic Methods for Biomedical Scholarly Document Categorization and Question AnsweringParvez Zamil, Gollam Rabby, Md. Sadekur Rahman et al.
The growing volume of biomedical scholarly document abstracts presents an increasing challenge in efficiently retrieving accurate and relevant information. To address this, we introduce a novel approach that integrates an optimized topic modelling framework, OVB-LDA, with the BI-POP CMA-ES optimization technique for enhanced scholarly document abstract categorization. Complementing this, we employ the distilled MiniLM model, fine-tuned on domain-specific data, for high-precision answer extraction. Our approach is evaluated across three configurations: scholarly document abstract retrieval, gold-standard scholarly documents abstract, and gold-standard snippets, consistently outperforming established methods such as RYGH and bio-answer finder. Notably, we demonstrate that extracting answers from scholarly documents abstracts alone can yield high accuracy, underscoring the sufficiency of abstracts for many biomedical queries. Despite its compact size, MiniLM exhibits competitive performance, challenging the prevailing notion that only large, resource-intensive models can handle such complex tasks. Our results, validated across various question types and evaluation batches, highlight the robustness and adaptability of our method in real-world biomedical applications. While our approach shows promise, we identify challenges in handling complex list-type questions and inconsistencies in evaluation metrics. Future work will focus on refining the topic model with more extensive domain-specific datasets, further optimizing MiniLM and utilizing large language models (LLM) to improve both precision and efficiency in biomedical question answering.