88.9IRMar 20Code
AgentSLR: Automating Systematic Literature Reviews in Epidemiology with Agentic AIShreyansh Padarha, Ryan Othniel Kearns, Tristan Naidoo et al.
Systematic literature reviews are essential for synthesizing scientific evidence but are costly, difficult to scale and time-intensive, creating bottlenecks for evidence-based policy. We study whether large language models can automate the complete systematic review workflow, from article retrieval, article screening, data extraction to report synthesis. Applied to epidemiological reviews of nine WHO-designated priority pathogens and validated against expert-curated ground truth, our open-source agentic pipeline (AgentSLR) achieves performance comparable to human researchers while reducing review time from approximately 7 weeks to 20 hours (a 58x speed-up). Our comparison of five frontier models reveals that performance on SLR is driven less by model size or inference cost than by each model's distinctive capabilities. Through human-in-the-loop validation, we identify key failure modes. Our results demonstrate that agentic AI can substantially accelerate scientific evidence synthesis in specialised domains.
79.9LGMay 28
Faithful Embeddings of Irregular and Asynchronous Data for Online Log-NCDEsBenjamin Walker, Alexandre Bloch, Lingyi Yang et al.
Continuous-time models are a natural choice for irregular and asynchronous data. A central design choice is how to embed discrete observations into continuous time. Interpolation- and imputation-based embeddings reconstruct a continuous observation path, making the model sensitive to the choice of reconstruction. We show that this reconstruction step is unnecessary; under mild conditions, compact-set universality on the model input space transfers to the data space whenever the embedding from data to input is continuous and injective. Guided by this result, and building on the rectilinear control path for Neural Controlled Differential Equations (NCDEs), we introduce a continuous and injective embedding for Log-NCDEs, a universal class of continuous-time models. Our approach records observations as increments and composes them over arbitrary query intervals to directly form log-signatures. This provides interval-level summaries without first interpolating the observed variables, while supporting online computation. Experiments on synthetic controlled dynamics and real-world time-series datasets show that the representation is accurate, efficient, and robust to irregular, asynchronous, and sparse observations.
CLJul 21, 2023
Is ChatGPT Involved in Texts? Measure the Polish Ratio to Detect ChatGPT-Generated TextLingyi Yang, Feng Jiang, Haizhou Li
The remarkable capabilities of large-scale language models, such as ChatGPT, in text generation have impressed readers and spurred researchers to devise detectors to mitigate potential risks, including misinformation, phishing, and academic dishonesty. Despite this, most previous studies have been predominantly geared towards creating detectors that differentiate between purely ChatGPT-generated texts and human-authored texts. This approach, however, fails to work on discerning texts generated through human-machine collaboration, such as ChatGPT-polished texts. Addressing this gap, we introduce a novel dataset termed HPPT (ChatGPT-polished academic abstracts), facilitating the construction of more robust detectors. It diverges from extant corpora by comprising pairs of human-written and ChatGPT-polished abstracts instead of purely ChatGPT-generated texts. Additionally, we propose the "Polish Ratio" method, an innovative measure of the degree of modification made by ChatGPT compared to the original human-written text. It provides a mechanism to measure the degree of ChatGPT influence in the resulting text. Our experimental results show our proposed model has better robustness on the HPPT dataset and two existing datasets (HC3 and CDB). Furthermore, the "Polish Ratio" we proposed offers a more comprehensive explanation by quantifying the degree of ChatGPT involvement.
CLOct 29, 2024
Improving In-Context Learning with Small Language Model EnsemblesM. Mehdi Mojarradi, Lingyi Yang, Robert McCraith et al.
Large language models (LLMs) have shown impressive capabilities across various tasks, but their performance on domain-specific tasks remains limited. While methods like retrieval augmented generation and fine-tuning can help to address this, they require significant resources. In-context learning (ICL) is a cheap and efficient alternative but cannot match the accuracies of advanced methods. We present Ensemble SuperICL, a novel approach that enhances ICL by leveraging the expertise of multiple fine-tuned small language models (SLMs). Ensemble SuperICL achieves state of the art (SoTA) results on several natural language understanding benchmarks. Additionally, we test it on a medical-domain labelling task and showcase its practicality by using off-the-shelf SLMs fine-tuned on a general language task, achieving superior accuracy in large-scale data labelling compared to all baselines. Finally, we conduct an ablation study and sensitivity analyses to elucidate the underlying mechanism of Ensemble SuperICL. Our research contributes to the growing demand for efficient domain specialisation methods in LLMs, offering a cheap and effective method for practitioners.
LGMay 23, 2025
Structured Linear CDEs: Maximally Expressive and Parallel-in-Time Sequence ModelsBenjamin Walker, Lingyi Yang, Nicola Muca Cirone et al.
This work introduces Structured Linear Controlled Differential Equations (SLiCEs), a unifying framework for sequence models with structured, input-dependent state-transition matrices that retain the maximal expressivity of dense matrices whilst being cheaper to compute. The framework encompasses existing architectures, such as input-dependent block-diagonal linear recurrent neural networks and DeltaNet's diagonal-plus-low-rank structure, as well as two novel variants based on sparsity and the Walsh-Hadamard transform. We prove that, unlike the diagonal state-transition matrices of S4D and Mamba, SLiCEs employing block-diagonal, sparse, or Walsh-Hadamard matrices match the maximal expressivity of dense matrices. Empirically, SLiCEs solve the $A_5$ state-tracking benchmark with a single layer, achieve best-in-class length generalisation on regular language tasks among parallel-in-time models, and match the performance of log neural controlled differential equations on six multivariate time-series classification datasets while cutting the average time per training step by a factor of twenty.
LGApr 30, 2024
Neural Controlled Differential Equations with Quantum Hidden EvolutionsLingyi Yang, Zhen Shao
We introduce a class of neural controlled differential equation inspired by quantum mechanics. Neural quantum controlled differential equations (NQDEs) model the dynamics by analogue of the Schrödinger equation. Specifically, the hidden state represents the wave function, and its collapse leads to an interpretation of the classification probability. We implement and compare the results of four variants of NQDEs on a toy spiral classification problem.
CLMar 4, 2025
LINGOLY-TOO: Disentangling Reasoning from Knowledge with Templatised Orthographic ObfuscationJude Khouja, Karolina Korgul, Simi Hellsten et al.
The expanding knowledge and memorisation capacity of frontier language models allows them to solve many reasoning tasks directly by exploiting prior knowledge, leading to inflated estimates of their reasoning abilities. We introduce LINGOLY-TOO, a challenging reasoning benchmark grounded in natural language and designed to counteract the effect of non-reasoning abilities on reasoning estimates. Using linguistically informed rulesets, we permute reasoning problems written in real languages to generate numerous question variations. These permutations preserve the intrinsic reasoning steps required for each solution while reducing the likelihood problems are directly solvable with models' knowledge. Experiments and analyses show that models can circumvent reasoning and answer from prior knowledge. On a metric that rewards consistent reasoning, all models perform poorly and exhibit high variance across question permutations, indicating that Large Language Models' (LLMs) reasoning faculty remains brittle. Overall, results on the benchmark reflect the recent progress of Inference-Time Compute (ITC) models but suggest ample room for further improvement. The benchmark is a step towards better measurement of reasoning abilities of LLMs and offers a cautionary tale on the importance of disentangling reasoning abilities from models' internalised knowledge when developing reasoning benchmarks.
LGAug 23, 2025
Sig-DEG for Distillation: Making Diffusion Models Faster and LighterLei Jiang, Wen Ge, Niels Cariou-Kotlarek et al.
Diffusion models have achieved state-of-the-art results in generative modelling but remain computationally intensive at inference time, often requiring thousands of discretization steps. To this end, we propose Sig-DEG (Signature-based Differential Equation Generator), a novel generator for distilling pre-trained diffusion models, which can universally approximate the backward diffusion process at a coarse temporal resolution. Inspired by high-order approximations of stochastic differential equations (SDEs), Sig-DEG leverages partial signatures to efficiently summarize Brownian motion over sub-intervals and adopts a recurrent structure to enable accurate global approximation of the SDE solution. Distillation is formulated as a supervised learning task, where Sig-DEG is trained to match the outputs of a fine-resolution diffusion model on a coarse time grid. During inference, Sig-DEG enables fast generation, as the partial signature terms can be simulated exactly without requiring fine-grained Brownian paths. Experiments demonstrate that Sig-DEG achieves competitive generation quality while reducing the number of inference steps by an order of magnitude. Our results highlight the effectiveness of signature-based approximations for efficient generative modeling.
LGJun 21, 2021
Neural Controlled Differential Equations for Online Prediction TasksJames Morrill, Patrick Kidger, Lingyi Yang et al.
Neural controlled differential equations (Neural CDEs) are a continuous-time extension of recurrent neural networks (RNNs), achieving state-of-the-art (SOTA) performance at modelling functions of irregular time series. In order to interpret discrete data in continuous time, current implementations rely on non-causal interpolations of the data. This is fine when the whole time series is observed in advance, but means that Neural CDEs are not suitable for use in \textit{online prediction tasks}, where predictions need to be made in real-time: a major use case for recurrent networks. Here, we show how this limitation may be rectified. First, we identify several theoretical conditions that interpolation schemes for Neural CDEs should satisfy, such as boundedness and uniqueness. Second, we use these to motivate the introduction of new schemes that address these conditions, offering in particular measurability (for online prediction), and smoothness (for speed). Third, we empirically benchmark our online Neural CDE model on three continuous monitoring tasks from the MIMIC-IV medical database: we demonstrate improved performance on all tasks against ODE benchmarks, and on two of the three tasks against SOTA non-ODE benchmarks.