Yaniv Yacoby

Jiayu Yao, Yaniv Yacoby, Beau Coker et al.

Comparing Bayesian neural networks (BNNs) with different widths is challenging because, as the width increases, multiple model properties change simultaneously, and, inference in the finite-width case is intractable. In this work, we empirically compare finite- and infinite-width BNNs, and provide quantitative and qualitative explanations for their performance difference. We find that when the model is mis-specified, increasing width can hurt BNN performance. In these cases, we provide evidence that finite-width BNNs generalize better partially due to the properties of their frequency spectrum that allows them to adapt under model mismatch.

Genesis Hang, Annie Chen, Hope Neveux et al.

Ecological Momentary Assessment provides real-time data on suicidal thoughts and behaviors, but predicting suicide attempts remains challenging due to their rarity and patient heterogeneity. We show that single models fit to all patients perform poorly, while individualized models improve performance but still overfit to patients with limited data. To address this, we introduce Latent Similarity Gaussian Processes (LSGPs) to capture patient heterogeneity, enabling those with little data to leverage similar patients' trends. Preliminary results show promise: even without kernel-design, we outperform all but one baseline while offering a new understanding of patient similarity.

Yue-Jane Liu, Malinda Lu, Matthew K. Nock et al.

Many modern probabilistic models rely on SDEs, but their adoption is hampered by instability, poor inductive bias outside bounded domains, and reliance on restrictive dynamics or training tricks. While recent work constrains SDEs to compact spaces using reflected dynamics, these approaches lack continuous dynamics and efficient high-order solvers, limiting interpretability and applicability. We propose a novel class of neural SDEs on compact polyhedral spaces with continuous dynamics, amenable to higher-order solvers, and with favorable inductive bias.

Hiwot Belay Tadesse, Alihan Hüyük, Yaniv Yacoby et al.

When explaining black-box machine learning models, it's often important for explanations to have certain desirable properties. Most existing methods `encourage' desirable properties in their construction of explanations. In this work, we demonstrate that these forms of encouragement do not consistently create explanations with the properties that are supposedly being targeted. Moreover, they do not allow for any control over which properties are prioritized when different properties are at odds with each other. We propose to directly optimize explanations for desired properties. Our direct approach not only produces explanations with optimal properties more consistently but also empowers users to control trade-offs between different properties, allowing them to create explanations with exactly what is needed for a particular task.

Yaniv Yacoby, Weiwei Pan, Finale Doshi-Velez

Inference for Variational Autoencoders (VAEs) consists of learning two models: (1) a generative model, which transforms a simple distribution over a latent space into the distribution over observed data, and (2) an inference model, which approximates the posterior of the latent codes given data. The two components are learned jointly via a lower bound to the generative model's log marginal likelihood. In early phases of joint training, the inference model poorly approximates the latent code posteriors. Recent work showed that this leads optimization to get stuck in local optima, negatively impacting the learned generative model. As such, recent work suggests ensuring a high-quality inference model via iterative training: maximizing the objective function relative to the inference model before every update to the generative model. Unfortunately, iterative training is inefficient, requiring heuristic criteria for reverting from iterative to joint training for speed. Here, we suggest an inference method that trains the generative and inference models independently. It approximates the posterior of the true model a priori; fixing this posterior approximation, we then maximize the lower bound relative to only the generative model. By conventional wisdom, this approach should rely on the true prior and likelihood of the true model to approximate its posterior (which are unknown). However, we show that we can compute a deterministic, model-agnostic posterior approximation (MAPA) of the true model's posterior. We then use MAPA to develop a proof-of-concept inference method. We present preliminary results on low-dimensional synthetic data that (1) MAPA captures the trend of the true posterior, and (2) our MAPA-based inference performs better density estimation with less computation than baselines. Lastly, we present a roadmap for scaling the MAPA-based inference method to high-dimensional data.

Yaniv Yacoby, Weiwei Pan, Finale Doshi-Velez

Variational Auto-encoders (VAEs) are deep generative latent variable models that are widely used for a number of downstream tasks. While it has been demonstrated that VAE training can suffer from a number of pathologies, existing literature lacks characterizations of exactly when these pathologies occur and how they impact downstream task performance. In this paper, we concretely characterize conditions under which VAE training exhibits pathologies and connect these failure modes to undesirable effects on specific downstream tasks, such as learning compressed and disentangled representations, adversarial robustness, and semi-supervised learning.

Théo Guénais, Dimitris Vamvourellis, Yaniv Yacoby et al.

Traditional training of deep classifiers yields overconfident models that are not reliable under dataset shift. We propose a Bayesian framework to obtain reliable uncertainty estimates for deep classifiers. Our approach consists of a plug-in "generator" used to augment the data with an additional class of points that lie on the boundary of the training data, followed by Bayesian inference on top of features that are trained to distinguish these "out-of-distribution" points.

Sujay Thakur, Cooper Lorsung, Yaniv Yacoby et al.

Neural Linear Models (NLM) are deep Bayesian models that produce predictive uncertainties by learning features from the data and then performing Bayesian linear regression over these features. Despite their popularity, few works have focused on methodically evaluating the predictive uncertainties of these models. In this work, we demonstrate that traditional training procedures for NLMs drastically underestimate uncertainty on out-of-distribution inputs, and that they therefore cannot be naively deployed in risk-sensitive applications. We identify the underlying reasons for this behavior and propose a novel training framework that captures useful predictive uncertainties for downstream tasks.

Yaniv Yacoby, Weiwei Pan, Finale Doshi-Velez

Variational Auto-encoders (VAEs) are deep generative latent variable models consisting of two components: a generative model that captures a data distribution p(x) by transforming a distribution p(z) over latent space, and an inference model that infers likely latent codes for each data point (Kingma and Welling, 2013). Recent work shows that traditional training methods tend to yield solutions that violate modeling desiderata: (1) the learned generative model captures the observed data distribution but does so while ignoring the latent codes, resulting in codes that do not represent the data (e.g. van den Oord et al. (2017); Kim et al. (2018)); (2) the aggregate of the learned latent codes does not match the prior p(z). This mismatch means that the learned generative model will be unable to generate realistic data with samples from p(z)(e.g. Makhzani et al. (2015); Tomczak and Welling (2017)). In this paper, we demonstrate that both issues stem from the fact that the global optima of the VAE training objective often correspond to undesirable solutions. Our analysis builds on two observations: (1) the generative model is unidentifiable - there exist many generative models that explain the data equally well, each with different (and potentially unwanted) properties and (2) bias in the VAE objective - the VAE objective may prefer generative models that explain the data poorly but have posteriors that are easy to approximate. We present a novel inference method, LiBI, mitigating the problems identified in our analysis. On synthetic datasets, we show that LiBI can learn generative models that capture the data distribution and inference models that better satisfy modeling assumptions when traditional methods struggle to do so.

Yaniv Yacoby, Weiwei Pan, Finale Doshi-Velez

Bayesian Neural Networks with Latent Variables (BNN+LVs) capture predictive uncertainty by explicitly modeling model uncertainty (via priors on network weights) and environmental stochasticity (via a latent input noise variable). In this work, we first show that BNN+LV suffers from a serious form of non-identifiability: explanatory power can be transferred between the model parameters and latent variables while fitting the data equally well. We demonstrate that as a result, in the limit of infinite data, the posterior mode over the network weights and latent variables is asymptotically biased away from the ground-truth. Due to this asymptotic bias, traditional inference methods may in practice yield parameters that generalize poorly and misestimate uncertainty. Next, we develop a novel inference procedure that explicitly mitigates the effects of likelihood non-identifiability during training and yields high-quality predictions as well as uncertainty estimates. We demonstrate that our inference method improves upon benchmark methods across a range of synthetic and real data-sets.