Zhiqiang He

Yao Zhang, Nanjun He, Jiawei Yang et al.

Accurate brain tumor segmentation from Magnetic Resonance Imaging (MRI) is desirable to joint learning of multimodal images. However, in clinical practice, it is not always possible to acquire a complete set of MRIs, and the problem of missing modalities causes severe performance degradation in existing multimodal segmentation methods. In this work, we present the first attempt to exploit the Transformer for multimodal brain tumor segmentation that is robust to any combinatorial subset of available modalities. Concretely, we propose a novel multimodal Medical Transformer (mmFormer) for incomplete multimodal learning with three main components: the hybrid modality-specific encoders that bridge a convolutional encoder and an intra-modal Transformer for both local and global context modeling within each modality; an inter-modal Transformer to build and align the long-range correlations across modalities for modality-invariant features with global semantics corresponding to tumor region; a decoder that performs a progressive up-sampling and fusion with the modality-invariant features to generate robust segmentation. Besides, auxiliary regularizers are introduced in both encoder and decoder to further enhance the model's robustness to incomplete modalities. We conduct extensive experiments on the public BraTS $2018$ dataset for brain tumor segmentation. The results demonstrate that the proposed mmFormer outperforms the state-of-the-art methods for incomplete multimodal brain tumor segmentation on almost all subsets of incomplete modalities, especially by an average 19.07% improvement of Dice on tumor segmentation with only one available modality. The code is available at https://github.com/YaoZhang93/mmFormer.

Lanning Wei, Huan Zhao, Xiaohan Zheng et al. · tsinghua

Designing versatile graph learning approaches is important, considering the diverse graphs and tasks existing in real-world applications. Existing methods have attempted to achieve this target through automated machine learning techniques, pre-training and fine-tuning strategies, and large language models. However, these methods are not versatile enough for graph learning, as they work on either limited types of graphs or a single task. In this paper, we propose to explore versatile graph learning approaches with LLM-based agents, and the key insight is customizing the graph learning procedures for diverse graphs and tasks. To achieve this, we develop several LLM-based agents, equipped with diverse profiles, tools, functions and human experience. They collaborate to configure each procedure with task and data-specific settings step by step towards versatile solutions, and the proposed method is dubbed GL-Agent. By evaluating on diverse tasks and graphs, the correct results of the agent and its comparable performance showcase the versatility of the proposed method, especially in complex scenarios.The low resource cost and the potential to use open-source LLMs highlight the efficiency of GL-Agent.

Lanning Wei, Zhiqiang He, Huan Zhao et al. · tsinghua

In recent years, Graph Neural Networks (GNNs) have been popular in the graph classification task. Currently, shallow GNNs are more common due to the well-known over-smoothing problem facing deeper GNNs. However, they are sub-optimal without utilizing the information from distant nodes, i.e., the long-range dependencies. The mainstream methods in the graph classification task can extract the long-range dependencies either by designing the pooling operations or incorporating the higher-order neighbors, while they have evident drawbacks by modifying the original graph structure, which may result in information loss in graph structure learning. In this paper, by justifying the smaller influence of the over-smoothing problem in the graph classification task, we evoke the importance of stacking-based GNNs and then employ them to capture the long-range dependencies without modifying the original graph structure. To achieve this, two design needs are given for stacking-based GNNs, i.e., sufficient model depth and adaptive skip-connection schemes. By transforming the two design needs into designing data-specific inter-layer connections, we propose a novel approach with the help of neural architecture search (NAS), which is dubbed LRGNN (Long-Range Graph Neural Networks). Extensive experiments on five datasets show that the proposed LRGNN can achieve the best performance, and obtained data-specific GNNs with different depth and skip-connection schemes, which can better capture the long-range dependencies.

Lanning Wei, Zhiqiang He, Huan Zhao et al. · tsinghua

In recent years, Graph Neural Networks (GNNs) have been popular in graph representation learning which assumes the homophily property, i.e., the connected nodes have the same label or have similar features. However, they may fail to generalize into the heterophilous graphs which in the low/medium level of homophily. Existing methods tend to address this problem by enhancing the intra-class information extraction, i.e., either by designing better GNNs to improve the model effectiveness, or re-designing the graph structures to incorporate more potential intra-class nodes from distant hops. Despite the success, we observe two aspects that can be further improved: (a) enhancing the ego feature information extraction from node itself which is more reliable in extracting the intra-class information; (b) designing node-wise GNNs can better adapt to the nodes with different homophily ratios. In this paper, we propose a novel method IIE-GNN (Intra-class Information Enhanced Graph Neural Networks) to achieve two improvements. A unified framework is proposed based on the literature, in which the intra-class information from the node itself and neighbors can be extracted based on seven carefully designed blocks. With the help of neural architecture search (NAS), we propose a novel search space based on the framework, and then provide an architecture predictor to design GNNs for each node. We further conduct experiments to show that IIE-GNN can improve the model performance by designing node-wise GNNs to enhance intra-class information extraction.

Yunjie Peng, Saihui Hou, Chunshui Cao et al.

Occluded person re-identification (Re-ID) aims at addressing the occlusion problem when retrieving the person of interest across multiple cameras. With the promotion of deep learning technology and the increasing demand for intelligent video surveillance, the frequent occlusion in real-world applications has made occluded person Re-ID draw considerable interest from researchers. A large number of occluded person Re-ID methods have been proposed while there are few surveys that focus on occlusion. To fill this gap and help boost future research, this paper provides a systematic survey of occluded person Re-ID. Through an in-depth analysis of the occlusion in person Re-ID, most existing methods are found to only consider part of the problems brought by occlusion. Therefore, we review occlusion-related person Re-ID methods from the perspective of issues and solutions. We summarize four issues caused by occlusion in person Re-ID, i.e., position misalignment, scale misalignment, noisy information, and missing information. The occlusion-related methods addressing different issues are then categorized and introduced accordingly. After that, we summarize and compare the performance of recent occluded person Re-ID methods on four popular datasets: Partial-ReID, Partial-iLIDS, Occluded-ReID, and Occluded-DukeMTMC. Finally, we provide insights on promising future research directions.

Yang Liu, Yao Zhang, Yixin Wang et al.

Recently, the dominant DETR-based approaches apply central-concept spatial prior to accelerate Transformer detector convergency. These methods gradually refine the reference points to the center of target objects and imbue object queries with the updated central reference information for spatially conditional attention. However, centralizing reference points may severely deteriorate queries' saliency and confuse detectors due to the indiscriminative spatial prior. To bridge the gap between the reference points of salient queries and Transformer detectors, we propose SAlient Point-based DETR (SAP-DETR) by treating object detection as a transformation from salient points to instance objects. In SAP-DETR, we explicitly initialize a query-specific reference point for each object query, gradually aggregate them into an instance object, and then predict the distance from each side of the bounding box to these points. By rapidly attending to query-specific reference region and other conditional extreme regions from the image features, SAP-DETR can effectively bridge the gap between the salient point and the query-based Transformer detector with a significant convergency speed. Our extensive experiments have demonstrated that SAP-DETR achieves 1.4 times convergency speed with competitive performance. Under the standard training scheme, SAP-DETR stably promotes the SOTA approaches by 1.0 AP. Based on ResNet-DC-101, SAP-DETR achieves 46.9 AP.

Yao Zhang, Jiawei Yang, Yang Liu et al.

Purpose: Automated liver tumor segmentation from Computed Tomography (CT) images is a necessary prerequisite in the interventions of hepatic abnormalities and surgery planning. However, accurate liver tumor segmentation remains challenging due to the large variability of tumor sizes and inhomogeneous texture. Recent advances based on Fully Convolutional Network (FCN) for medical image segmentation drew on the success of learning discriminative pyramid features. In this paper, we propose a Decoupled Pyramid Correlation Network (DPC-Net) that exploits attention mechanisms to fully leverage both low- and high-level features embedded in FCN to segment liver tumor. Methods: We first design a powerful Pyramid Feature Encoder (PFE) to extract multi-level features from input images. Then we decouple the characteristics of features concerning spatial dimension (i.e., height, width, depth) and semantic dimension (i.e., channel). On top of that, we present two types of attention modules, Spatial Correlation (SpaCor) and Semantic Correlation (SemCor) modules, to recursively measure the correlation of multi-level features. The former selectively emphasizes global semantic information in low-level features with the guidance of high-level ones. The latter adaptively enhance spatial details in high-level features with the guidance of low-level ones. Results: We evaluate the DPC-Net on MICCAI 2017 LiTS Liver Tumor Segmentation (LiTS) challenge dataset. Dice Similarity Coefficient (DSC) and Average Symmetric Surface Distance (ASSD) are employed for evaluation. The proposed method obtains a DSC of 76.4% and an ASSD of 0.838 mm for liver tumor segmentation, outperforming the state-of-the-art methods. It also achieves a competitive results with a DSC of 96.0% and an ASSD of 1.636 mm for liver segmentation.

Feng Hou, Yao Zhang, Yang Liu et al.

Due to domain shift, deep neural networks (DNNs) usually fail to generalize well on unknown test data in practice. Domain generalization (DG) aims to overcome this issue by capturing domain-invariant representations from source domains. Motivated by the insight that only partial parameters of DNNs are optimized to extract domain-invariant representations, we expect a general model that is capable of well perceiving and emphatically updating such domain-invariant parameters. In this paper, we propose two modules of Domain Decoupling and Combination (DDC) and Domain-invariance-guided Backpropagation (DIGB), which can encourage such general model to focus on the parameters that have a unified optimization direction between pairs of contrastive samples. Our extensive experiments on two benchmarks have demonstrated that our proposed method has achieved state-of-the-art performance with strong generalization capability.

Yuqi Wang, Zhiqiang He, Shenghui Huang et al.

Intestinal parasitic infections, as a leading causes of morbidity worldwide, still lacks time-saving, high-sensitivity and user-friendly examination method. The development of deep learning technique reveals its broad application potential in biological image. In this paper, we apply several object detectors such as YOLOv5 and variant cascadeRCNNs to automatically discriminate parasitic eggs in microscope images. Through specially-designed optimization including raw data augmentation, model ensemble, transfer learning and test time augmentation, our model achieves excellent performance on challenge dataset. In addition, our model trained with added noise gains a high robustness against polluted input, which further broaden its applicability in practice.

Wen Qiu, Zhiqiang He, Wei Zhao et al.

Unmanned aerial vehicles serving as aerial base stations can rapidly restore connectivity after disasters, yet abrupt changes in user mobility and traffic demands shift the quality of service trade-offs and induce strong non-stationarity. Deep reinforcement learning policies suffer from plasticity loss under such shifts, as representation collapse and neuron dormancy impair adaptation. We propose plasticity enhanced multi-agent mixture of experts (PE-MAMoE), a centralized training with decentralized execution framework built on multi-agent proximal policy optimization. PE-MAMoE equips each UAV with a sparsely gated mixture of experts actor whose router selects a single specialist per step. A non-parametric Phase Controller injects brief, expert-only stochastic perturbations after phase switches, resets the action log-standard-deviation, anneals entropy and learning rate, and schedules the router temperature, all to re-plasticize the policy without destabilizing safe behaviors. We derive a dynamic regret bound showing the tracking error scales with both environment variation and cumulative noise energy. In a phase-driven simulator with mobile users and 3GPP-style channels, PE-MAMoE improves normalized interquartile mean return by 26.3\% over the best baseline, increases served-user capacity by 12.8\%, and reduces collisions by approximately 75\%. Diagnostics confirm persistently higher expert feature rank and periodic dormant-neuron recovery at regime switches.

Ruiyang Ma, Yunhao Zhou, Yipeng Wang et al.

There is a growing body of work on using Graph Neural Networks (GNNs) to learn representations of circuits, focusing primarily on their static characteristics. However, these models fail to capture circuit runtime behavior, which is crucial for tasks like circuit verification and optimization. To address this limitation, we introduce DR-GNN (DynamicRTL-GNN), a novel approach that learns RTL circuit representations by incorporating both static structures and multi-cycle execution behaviors. DR-GNN leverages an operator-level Control Data Flow Graph (CDFG) to represent Register Transfer Level (RTL) circuits, enabling the model to capture dynamic dependencies and runtime execution. To train and evaluate DR-GNN, we build the first comprehensive dynamic circuit dataset, comprising over 6,300 Verilog designs and 63,000 simulation traces. Our results demonstrate that DR-GNN outperforms existing models in branch hit prediction and toggle rate prediction. Furthermore, its learned representations transfer effectively to related dynamic circuit tasks, achieving strong performance in power estimation and assertion prediction.

Yang Liu, Yao Zhang, Yixin Wang et al.

Transformer, an attention-based encoder-decoder model, has already revolutionized the field of natural language processing (NLP). Inspired by such significant achievements, some pioneering works have recently been done on employing Transformer-liked architectures in the computer vision (CV) field, which have demonstrated their effectiveness on three fundamental CV tasks (classification, detection, and segmentation) as well as multiple sensory data stream (images, point clouds, and vision-language data). Because of their competitive modeling capabilities, the visual Transformers have achieved impressive performance improvements over multiple benchmarks as compared with modern Convolution Neural Networks (CNNs). In this survey, we have reviewed over one hundred of different visual Transformers comprehensively according to three fundamental CV tasks and different data stream types, where a taxonomy is proposed to organize the representative methods according to their motivations, structures, and application scenarios. Because of their differences on training settings and dedicated vision tasks, we have also evaluated and compared all these existing visual Transformers under different configurations. Furthermore, we have revealed a series of essential but unexploited aspects that may empower such visual Transformers to stand out from numerous architectures, e.g., slack high-level semantic embeddings to bridge the gap between the visual Transformers and the sequential ones. Finally, three promising research directions are suggested for future investment. We will continue to update the latest articles and their released source codes at https://github.com/liuyang-ict/awesome-visual-transformers.

Jiawei Yang, Yao Zhang, Yuan Liang et al.

Deep learning models are notoriously data-hungry. Thus, there is an urging need for data-efficient techniques in medical image analysis, where well-annotated data are costly and time consuming to collect. Motivated by the recently revived "Copy-Paste" augmentation, we propose TumorCP, a simple but effective object-level data augmentation method tailored for tumor segmentation. TumorCP is online and stochastic, providing unlimited augmentation possibilities for tumors' subjects, locations, appearances, as well as morphologies. Experiments on kidney tumor segmentation task demonstrate that TumorCP surpasses the strong baseline by a remarkable margin of 7.12% on tumor Dice. Moreover, together with image-level data augmentation, it beats the current state-of-the-art by 2.32% on tumor Dice. Comprehensive ablation studies are performed to validate the effectiveness of TumorCP. Meanwhile, we show that TumorCP can lead to striking improvements in extremely low-data regimes. Evaluated with only 10% labeled data, TumorCP significantly boosts tumor Dice by 21.87%. To the best of our knowledge, this is the very first work exploring and extending the "Copy-Paste" design in medical imaging domain. Code is available at: https://github.com/YaoZhang93/TumorCP.

Yao Zhang, Jiawei Yang, Jiang Tian et al.

Liver cancer is one of the most common cancers worldwide. Due to inconspicuous texture changes of liver tumor, contrast-enhanced computed tomography (CT) imaging is effective for the diagnosis of liver cancer. In this paper, we focus on improving automated liver tumor segmentation by integrating multi-modal CT images. To this end, we propose a novel mutual learning (ML) strategy for effective and robust multi-modal liver tumor segmentation. Different from existing multi-modal methods that fuse information from different modalities by a single model, with ML, an ensemble of modality-specific models learn collaboratively and teach each other to distill both the characteristics and the commonality between high-level representations of different modalities. The proposed ML not only enables the superiority for multi-modal learning but can also handle missing modalities by transferring knowledge from existing modalities to missing ones. Additionally, we present a modality-aware (MA) module, where the modality-specific models are interconnected and calibrated with attention weights for adaptive information exchange. The proposed modality-aware mutual learning (MAML) method achieves promising results for liver tumor segmentation on a large-scale clinical dataset. Moreover, we show the efficacy and robustness of MAML for handling missing modalities on both the liver tumor and public brain tumor (BRATS 2018) datasets. Our code is available at https://github.com/YaoZhang93/MAML.

Anjany Sekuboyina, Malek E. Husseini, Amirhossein Bayat et al.

Vertebral labelling and segmentation are two fundamental tasks in an automated spine processing pipeline. Reliable and accurate processing of spine images is expected to benefit clinical decision-support systems for diagnosis, surgery planning, and population-based analysis on spine and bone health. However, designing automated algorithms for spine processing is challenging predominantly due to considerable variations in anatomy and acquisition protocols and due to a severe shortage of publicly available data. Addressing these limitations, the Large Scale Vertebrae Segmentation Challenge (VerSe) was organised in conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2019 and 2020, with a call for algorithms towards labelling and segmentation of vertebrae. Two datasets containing a total of 374 multi-detector CT scans from 355 patients were prepared and 4505 vertebrae have individually been annotated at voxel-level by a human-machine hybrid algorithm (https://osf.io/nqjyw/, https://osf.io/t98fz/). A total of 25 algorithms were benchmarked on these datasets. In this work, we present the the results of this evaluation and further investigate the performance-variation at vertebra-level, scan-level, and at different fields-of-view. We also evaluate the generalisability of the approaches to an implicit domain shift in data by evaluating the top performing algorithms of one challenge iteration on data from the other iteration. The principal takeaway from VerSe: the performance of an algorithm in labelling and segmenting a spine scan hinges on its ability to correctly identify vertebrae in cases of rare anatomical variations. The content and code concerning VerSe can be accessed at: https://github.com/anjany/verse.

Zhiqiang He

This paper investigates the fundamental mechanisms driving plasticity loss in deep reinforcement learning (RL), a critical challenge where neural networks lose their ability to adapt to non-stationary environments. While existing research often relies on descriptive metrics like dormant neurons or effective rank, these summaries fail to explain the underlying optimization dynamics. We propose the Optimization-Centric Plasticity (OCP) hypothesis, which posits that plasticity loss arises because optimal points from previous tasks become poor local optima for new tasks, trapping parameters during task transitions and hindering subsequent learning. We theoretically establish the equivalence between neuron dormancy and zero-gradient states, demonstrating that the absence of gradient signals is the primary driver of dormancy. Our experiments reveal that plasticity loss is highly task-specific; notably, networks with high dormancy rates in one task can achieve performance parity with randomly initialized networks when switched to a significantly different task, suggesting that the network's capacity remains intact but is inhibited by the specific optimization landscape. Furthermore, our hypothesis elucidates why parameter constraints mitigate plasticity loss by preventing deep entrenchment in local optima. Validated across diverse non-stationary scenarios, our findings provide a rigorous optimization-based framework for understanding and restoring network plasticity in complex RL domains.

Feng Hou, Jin Yuan, Ying Yang et al.

Traditional cross-domain tasks, including domain adaptation and domain generalization, rely heavily on training model by source domain data. With the recent advance of vision-language models (VLMs), viewed as natural source models, the cross-domain task changes to directly adapt the pre-trained source model to arbitrary target domains equipped with prior domain knowledge, and we name this task Adaptive Domain Generalization (ADG). However, current cross-domain datasets have many limitations, such as unrealistic domains, unclear domain definitions, and the inability to fine-grained domain decomposition, which drives us to establish a novel dataset DomainVerse for ADG. Benefiting from the introduced hierarchical definition of domain shifts, DomainVerse consists of about 0.5 million images from 390 fine-grained realistic domains. With the help of the constructed DomainVerse and VLMs, we propose two methods called Domain CLIP and Domain++ CLIP for tuning-free adaptive domain generalization. Extensive and comprehensive experiments demonstrate the significance of the dataset and the effectiveness of the proposed methods.

Zhiqiang He, Zhi Liu

Adaptive video streaming systems are designed to optimize Quality of Experience (QoE) and, in turn, enhance user satisfaction. However, differences in user profiles and video content lead to different weights for QoE factors, resulting in user-specific QoE functions and, thus, varying optimization objectives. This variability poses significant challenges for neural networks, as they often struggle to generalize under evolving targets - a phenomenon known as plasticity loss that prevents conventional models from adapting effectively to changing optimization objectives. To address this limitation, we propose the Plasticity-Aware Mixture of Experts (PA-MoE), a novel learning framework that dynamically modulates network plasticity by balancing memory retention with selective forgetting. In particular, PA-MoE leverages noise injection to promote the selective forgetting of outdated knowledge, thereby endowing neural networks with enhanced adaptive capabilities. In addition, we present a rigorous theoretical analysis of PA-MoE by deriving a regret bound that quantifies its learning performance. Experimental evaluations demonstrate that PA-MoE achieves a 45.5% improvement in QoE over competitive baselines in dynamic streaming environments. Further analysis reveals that the model effectively mitigates plasticity loss by optimizing neuron utilization. Finally, a parameter sensitivity study is performed by injecting varying levels of noise, and the results align closely with our theoretical predictions.

Leizhen Wang, Peibo Duan, Cheng Lyu et al.

The evolution of metropolitan cities and the increase in travel demands impose stringent requirements on traffic assignment methods. Multi-agent reinforcement learning (MARL) approaches outperform traditional methods in modeling adaptive routing behavior without requiring explicit system dynamics, which is beneficial for real-world deployment. However, MARL frameworks face challenges in scalability and reliability when managing extensive networks with substantial travel demand, which limiting their practical applicability in solving large-scale traffic assignment problems. To address these challenges, this study introduces MARL-OD-DA, a new MARL framework for the traffic assignment problem, which redefines agents as origin-destination (OD) pair routers rather than individual travelers, significantly enhancing scalability. Additionally, a Dirichlet-based action space with action pruning and a reward function based on the local relative gap are designed to enhance solution reliability and improve convergence efficiency. Experiments demonstrate that the proposed MARL framework effectively handles medium-sized networks with extensive and varied city-level OD demand, surpassing existing MARL methods. When implemented in the SiouxFalls network, MARL-OD-DA achieves better assignment solutions in 10 steps, with a relative gap that is 94.99% lower than that of conventional methods.

Zhiqiang He, Zhi Liu

Adapting to non-stationary network conditions presents significant challenges for resource adaptation. However, current solutions primarily rely on stationary assumptions. While data-driven reinforcement learning approaches offer promising solutions for handling network dynamics, our systematic investigation reveals a critical limitation: neural networks suffer from plasticity loss, significantly impeding their ability to adapt to evolving network conditions. Through theoretical analysis of neural propagation mechanisms, we demonstrate that existing dormant neuron metrics inadequately characterize neural plasticity loss. To address this limitation, we have developed the Silent Neuron theory, which provides a more comprehensive framework for understanding plasticity degradation. Based on these theoretical insights, we propose the Reset Silent Neuron (ReSiN), which preserves neural plasticity through strategic neuron resets guided by both forward and backward propagation states. In our implementation of an adaptive video streaming system, ReSiN has shown significant improvements over existing solutions, achieving up to 168% higher bitrate and 108% better quality of experience (QoE) while maintaining comparable smoothness. Furthermore, ReSiN consistently outperforms in stationary environments, demonstrating its robust adaptability across different network conditions.

Lanning Wei, Huan Zhao, Zhiqiang He

In recent years, Graph Neural Networks (GNNs) have shown superior performance on diverse real-world applications. To improve the model capacity, besides designing aggregation operations, GNN topology design is also very important. In general, there are two mainstream GNN topology design manners. The first one is to stack aggregation operations to obtain the higher-level features but easily got performance drop as the network goes deeper. Secondly, the multiple aggregation operations are utilized in each layer which provides adequate and independent feature extraction stage on local neighbors while are costly to obtain the higher-level information. To enjoy the benefits while alleviating the corresponding deficiencies of these two manners, we learn to design the topology of GNNs in a novel feature fusion perspective which is dubbed F$^2$GNN. To be specific, we provide a feature fusion perspective in designing GNN topology and propose a novel framework to unify the existing topology designs with feature selection and fusion strategies. Then we develop a neural architecture search method on top of the unified framework which contains a set of selection and fusion operations in the search space and an improved differentiable search algorithm. The performance gains on eight real-world datasets demonstrate the effectiveness of F$^2$GNN. We further conduct experiments to show that F$^2$GNN can improve the model capacity while alleviating the deficiencies of existing GNN topology design manners, especially alleviating the over-smoothing problem, by utilizing different levels of features adaptively.

Lanning Wei, Huan Zhao, Zhiqiang He

In recent years, Graph Neural Networks (GNNs) have shown superior performance on diverse applications on real-world datasets. To improve the model capacity and alleviate the over-smoothing problem, several methods proposed to incorporate the intermediate layers by layer-wise connections. However, due to the highly diverse graph types, the performance of existing methods vary on diverse graphs, leading to a need for data-specific layer-wise connection methods. To address this problem, we propose a novel framework LLC (Learn Layer-wise Connections) based on neural architecture search (NAS) to learn adaptive connections among intermediate layers in GNNs. LLC contains one novel search space which consists of 3 types of blocks and learnable connections, and one differentiable search algorithm to enable the efficient search process. Extensive experiments on five real-world datasets are conducted, and the results show that the searched layer-wise connections can not only improve the performance but also alleviate the over-smoothing problem.

Yunjie Peng, Kang Ma, Yang Zhang et al.

Gait recognition captures gait patterns from the walking sequence of an individual for identification. Most existing gait recognition methods learn features from silhouettes or skeletons for the robustness to clothing, carrying, and other exterior factors. The combination of the two data modalities, however, is not fully exploited. Previous multimodal gait recognition methods mainly employ the skeleton to assist the local feature extraction where the intrinsic discrimination of the skeleton data is ignored. This paper proposes a simple yet effective Bimodal Fusion (BiFusion) network which mines discriminative gait patterns in skeletons and integrates with silhouette representations to learn rich features for identification. Particularly, the inherent hierarchical semantics of body joints in a skeleton is leveraged to design a novel Multi-Scale Gait Graph (MSGG) network for the feature extraction of skeletons. Extensive experiments on CASIA-B and OUMVLP demonstrate both the superiority of the proposed MSGG network in modeling skeletons and the effectiveness of the bimodal fusion for gait recognition. Under the most challenging condition of walking in different clothes on CASIA-B, our method achieves the rank-1 accuracy of 92.1%.

Lanning Wei, Huan Zhao, Quanming Yao et al.

Graph classification is an important problem with applications across many domains, like chemistry and bioinformatics, for which graph neural networks (GNNs) have been state-of-the-art (SOTA) methods. GNNs are designed to learn node-level representation based on neighborhood aggregation schemes, and to obtain graph-level representation, pooling methods are applied after the aggregation operation in existing GNN models to generate coarse-grained graphs. However,due to highly diverse applications of graph classification, and the performance of existing pooling methods vary on different graphs. In other words, it is a challenging problem to design a universal pooling architecture to perform well in most cases, leading to a demand for data-specific pooling methods in real-world applications. To address this problem, we propose to use neural architecture search (NAS) to search for adaptive pooling architectures for graph classification. Firstly we designed a unified framework consisting of four modules: Aggregation, Pooling, Readout, and Merge, which can cover existing human-designed pooling methods for graph classification. Based on this framework, a novel search space is designed by incorporating popular operations in human-designed architectures. Then to enable efficient search, a coarsening strategy is proposed to continuously relax the search space, thus a differentiable search method can be adopted. Extensive experiments on six real-world datasets from three domains are conducted, and the results demonstrate the effectiveness and efficiency of the proposed framework.

Yixin Wang, Yang Zhang, Yang Liu et al.

Accurate segmentation of brain tumors from magnetic resonance imaging (MRI) is clinically relevant in diagnoses, prognoses and surgery treatment, which requires multiple modalities to provide complementary morphological and physiopathologic information. However, missing modality commonly occurs due to image corruption, artifacts, different acquisition protocols or allergies to certain contrast agents in clinical practice. Though existing efforts demonstrate the possibility of a unified model for all missing situations, most of them perform poorly when more than one modality is missing. In this paper, we propose a novel Adversarial Co-training Network (ACN) to solve this issue, in which a series of independent yet related models are trained dedicated to each missing situation with significantly better results. Specifically, ACN adopts a novel co-training network, which enables a coupled learning process for both full modality and missing modality to supplement each other's domain and feature representations, and more importantly, to recover the `missing' information of absent modalities. Then, two unsupervised modules, i.e., entropy and knowledge adversarial learning modules are proposed to minimize the domain gap while enhancing prediction reliability and encouraging the alignment of latent representations, respectively. We also adapt modality-mutual information knowledge transfer learning to ACN to retain the rich mutual information among modalities. Extensive experiments on BraTS2018 dataset show that our proposed method significantly outperforms all state-of-the-art methods under any missing situation.

Yixin Wang, Zihao Lin, Zhe Xu et al.

Medical imaging plays a pivotal role in diagnosis and treatment in clinical practice. Inspired by the significant progress in automatic image captioning, various deep learning (DL)-based methods have been proposed to generate radiology reports for medical images. Despite promising results, previous works overlook the uncertainties of their models and are thus unable to provide clinicians with the reliability/confidence of the generated radiology reports to assist their decision-making. In this paper, we propose a novel method to explicitly quantify both the visual uncertainty and the textual uncertainty for DL-based radiology report generation. Such multi-modal uncertainties can sufficiently capture the model confidence degree at both the report level and the sentence level, and thus they are further leveraged to weight the losses for more comprehensive model optimization. Experimental results have demonstrated that the proposed method for model uncertainty characterization and estimation can produce more reliable confidence scores for radiology report generation, and the modified loss function, which takes into account the uncertainties, leads to better model performance on two public radiology report datasets. In addition, the quality of the automatically generated reports was manually evaluated by human raters and the results also indicate that the proposed uncertainties can reflect the variance of clinical diagnosis.

Yao Zhang, Jiawei Yang, Feng Hou et al.

Accurate segmentation of cardiac structures can assist doctors to diagnose diseases, and to improve treatment planning, which is highly demanded in the clinical practice. However, the shortage of annotation and the variance of the data among different vendors and medical centers restrict the performance of advanced deep learning methods. In this work, we present a fully automatic method to segment cardiac structures including the left (LV) and right ventricle (RV) blood pools, as well as for the left ventricular myocardium (MYO) in MRI volumes. Specifically, we design a semi-supervised learning method to leverage unlabelled MRI sequence timeframes by label propagation. Then we exploit style transfer to reduce the variance among different centers and vendors for more robust cardiac image segmentation. We evaluate our method in the M&Ms challenge 7 , ranking 2nd place among 14 competitive teams.

Yixin Wang, Yao Zhang, Jiang Tian et al.

Though deep learning has achieved advanced performance recently, it remains a challenging task in the field of medical imaging, as obtaining reliable labeled training data is time-consuming and expensive. In this paper, we propose a double-uncertainty weighted method for semi-supervised segmentation based on the teacher-student model. The teacher model provides guidance for the student model by penalizing their inconsistent prediction on both labeled and unlabeled data. We train the teacher model using Bayesian deep learning to obtain double-uncertainty, i.e. segmentation uncertainty and feature uncertainty. It is the first to extend segmentation uncertainty estimation to feature uncertainty, which reveals the capability to capture information among channels. A learnable uncertainty consistency loss is designed for the unsupervised learning process in an interactive manner between prediction and uncertainty. With no ground-truth for supervision, it can still incentivize more accurate teacher's predictions and facilitate the model to reduce uncertain estimations. Furthermore, our proposed double-uncertainty serves as a weight on each inconsistency penalty to balance and harmonize supervised and unsupervised training processes. We validate the proposed feature uncertainty and loss function through qualitative and quantitative analyses. Experimental results show that our method outperforms the state-of-the-art uncertainty-based semi-supervised methods on two public medical datasets.

Yixin Wang, Yao Zhang, Feng Hou et al.

Automatic brain tumor segmentation from multi-modality Magnetic Resonance Images (MRI) using deep learning methods plays an important role in assisting the diagnosis and treatment of brain tumor. However, previous methods mostly ignore the latent relationship among different modalities. In this work, we propose a novel end-to-end Modality-Pairing learning method for brain tumor segmentation. Paralleled branches are designed to exploit different modality features and a series of layer connections are utilized to capture complex relationships and abundant information among modalities. We also use a consistency loss to minimize the prediction variance between two branches. Besides, learning rate warmup strategy is adopted to solve the problem of the training instability and early over-fitting. Lastly, we use average ensemble of multiple models and some post-processing techniques to get final results. Our method is tested on the BraTS 2020 online testing dataset, obtaining promising segmentation performance, with average dice scores of 0.891, 0.842, 0.816 for the whole tumor, tumor core and enhancing tumor, respectively. We won the second place of the BraTS 2020 Challenge for the tumor segmentation task.

Yixin Wang, Yao Zhang, Yang Liu et al.

Coronavirus disease 2019 (COVID-19) is a highly contagious virus spreading all around the world. Deep learning has been adopted as an effective technique to aid COVID-19 detection and segmentation from computed tomography (CT) images. The major challenge lies in the inadequate public COVID-19 datasets. Recently, transfer learning has become a widely used technique that leverages the knowledge gained while solving one problem and applying it to a different but related problem. However, it remains unclear whether various non-COVID19 lung lesions could contribute to segmenting COVID-19 infection areas and how to better conduct this transfer procedure. This paper provides a way to understand the transferability of non-COVID19 lung lesions. Based on a publicly available COVID-19 CT dataset and three public non-COVID19 datasets, we evaluate four transfer learning methods using 3D U-Net as a standard encoder-decoder method. The results reveal the benefits of transferring knowledge from non-COVID19 lung lesions, and learning from multiple lung lesion datasets can extract more general features, leading to accurate and robust pre-trained models. We further show the capability of the encoder to learn feature representations of lung lesions, which improves segmentation accuracy and facilitates training convergence. In addition, our proposed Hybrid-encoder learning method incorporates transferred lung lesion features from non-COVID19 datasets effectively and achieves significant improvement. These findings promote new insights into transfer learning for COVID-19 CT image segmentation, which can also be further generalized to other medical tasks.

Jun Ma, Yixin Wang, Xingle An et al.

Purpose: Accurate segmentation of lung and infection in COVID-19 CT scans plays an important role in the quantitative management of patients. Most of the existing studies are based on large and private annotated datasets that are impractical to obtain from a single institution, especially when radiologists are busy fighting the coronavirus disease. Furthermore, it is hard to compare current COVID-19 CT segmentation methods as they are developed on different datasets, trained in different settings, and evaluated with different metrics. Methods: To promote the development of data-efficient deep learning methods, in this paper, we built three benchmarks for lung and infection segmentation based on 70 annotated COVID-19 cases, which contain current active research areas, e.g., few-shot learning, domain generalization, and knowledge transfer. For a fair comparison among different segmentation methods, we also provide standard training, validation and testing splits, evaluation metrics and, the corresponding code. Results: Based on the state-of-the-art network, we provide more than 40 pre-trained baseline models, which not only serve as out-of-the-box segmentation tools but also save computational time for researchers who are interested in COVID-19 lung and infection segmentation. We achieve average Dice Similarity Coefficient (DSC) scores of 97.3\%, 97.7\%, and 67.3\% and average Normalized Surface Dice (NSD) scores of 90.6\%, 91.4\%, and 70.0\% for left lung, right lung, and infection, respectively. Conclusions: To the best of our knowledge, this work presents the first data-efficient learning benchmark for medical image segmentation and the largest number of pre-trained models up to now. All these resources are publicly available, and our work lays the foundation for promoting the development of deep learning methods for efficient COVID-19 CT segmentation with limited data.

Yao Zhang, Cheng Zhong, Yang Zhang et al.

Liver tumor segmentation plays an important role in hepatocellular carcinoma diagnosis and surgical planning. In this paper, we propose a novel Semantic Feature Attention Network (SFAN) for liver tumor segmentation from Computed Tomography (CT) volumes, which exploits the impact of both low-level and high-level features. In the SFAN, a Semantic Attention Transmission (SAT) module is designed to select discriminative low-level localization details with the guidance of neighboring high-level semantic information. Furthermore, a Global Context Attention (GCA) module is proposed to effectively fuse the multi-level features with the guidance of global context. Our experiments are based on 2 challenging databases, the public Liver Tumor Segmentation (LiTS) Challenge database and a large-scale in-house clinical database with 912 CT volumes. Experimental results show that our proposed framework can not only achieve the state-of-the-art performance with the Dice per case on liver tumor segmentation in LiTS database, but also outperform some widely used segmentation algorithms in the large-scale clinical database.

Wei Teng, Yu Zhang, Xiaowu Chen et al.

Image co-segmentation is a challenging task in computer vision that aims to segment all pixels of the objects from a predefined semantic category. In real-world cases, however, common foreground objects often vary greatly in appearance, making their global shapes highly inconsistent across images and difficult to be segmented. To address this problem, this paper proposes a novel co-segmentation approach that transfers patch-level local object shapes which appear more consistent across different images. In our framework, a multi-scale patch neighbourhood system is first generated using proposal flow on arbitrary image-pair, which is further refined by Locally Linear Embedding. Based on the patch relationships, we propose an efficient algorithm to jointly segment the objects in each image while transferring their local shapes across different images. Extensive experiments demonstrate that the proposed method can robustly and effectively segment common objects from an image set. On iCoseg, MSRC and Coseg-Rep dataset, the proposed approach performs comparable or better than the state-of-thearts, while on a more challenging benchmark Fashionista dataset, our method achieves significant improvements.