Toqi Tahamid Sarker

Taminul Islam, Abdellah Lakhssassi, Toqi Tahamid Sarker et al.

Quantifying exhaled CO2 from free-roaming cattle is both a direct indicator of rumen metabolic state and a prerequisite for farm-scale carbon accounting, yet no existing system can deliver continuous, spatially resolved measurements without physical confinement or contact. We present TRACE (Thermal Recognition Attentive-Framework for CO2 Emissions from Livestock), the first unified framework to jointly address per-frame CO2 plume segmentation and clip-level emission flux classification from mid-wave infrared (MWIR) thermal video. TRACE contributes three domain-specific advances: a Thermal Gas-Aware Attention (TGAA) encoder that incorporates per-pixel gas intensity as a spatial supervisory signal to direct self-attention toward high-emission regions at each encoder stage; an Attention-based Temporal Fusion (ATF) module that captures breath-cycle dynamics through structured cross-frame attention for sequence-level flux classification; and a four-stage progressive training curriculum that couples both objectives while preventing gradient interference. Benchmarked against fifteen state-of-the-art models on the CO2 Farm Thermal Gas Dataset, TRACE achieves an mIoU of 0.998 and the best result on every segmentation and classification metric simultaneously, outperforming domain-specific gas segmenters with several times more parameters and surpassing all baselines in flux classification. Ablation studies confirm that each component is individually essential: gas-conditioned attention alone determines precise plume boundary localization, and temporal reasoning is indispensable for flux-level discrimination. TRACE establishes a practical path toward non-invasive, continuous, per-animal CO2 monitoring from overhead thermal cameras at commercial scale. Codes are available at https://github.com/taminulislam/trace.

Taminul Islam, Toqi Tahamid Sarker, Mohamed Embaby et al.

Ruminal acidosis is a prevalent metabolic disorder in dairy cattle causing significant economic losses and animal welfare concerns. Current diagnostic methods rely on invasive pH measurement, limiting scalability for continuous monitoring. We present FUME (Fused Unified Multi-gas Emission Network), the first deep learning approach for rumen acidosis detection from dual-gas optical imaging under in vitro conditions. Our method leverages complementary carbon dioxide (CO2) and methane (CH4) emission patterns captured by infrared cameras to classify rumen health into Healthy, Transitional, and Acidotic states. FUME employs a lightweight dual-stream architecture with weight-shared encoders, modality-specific self-attention, and channel attention fusion, jointly optimizing gas plume segmentation and classification of dairy cattle health. We introduce the first dual-gas OGI dataset comprising 8,967 annotated frames across six pH levels with pixel-level segmentation masks. Experiments demonstrate that FUME achieves 80.99% mIoU and 98.82% classification accuracy while using only 1.28M parameters and 1.97G MACs--outperforming state-of-the-art methods in segmentation quality with 10x lower computational cost. Ablation studies reveal that CO2 provides the primary discriminative signal and dual-task learning is essential for optimal performance. Our work establishes the feasibility of gas emission-based livestock health monitoring, paving the way for practical, in vitro acidosis detection systems. Codes are available at https://github.com/taminulislam/fume.

Khaled R Ahmed, Toqi Tahamid Sarker, Taminul Islam et al.

Monitoring frying oil degradation is critical for food safety, yet current practice relies on destructive wet-chemistry assays that provide no spatial information and are unsuitable for real-time use. We identify a fundamental obstacle in thermal-image-based inspection, the camera-fingerprint shortcut, whereby models memorize sensor-specific noise and thermal bias instead of learning oxidation chemistry, collapsing under video-disjoint evaluation. We propose FryNet, a dual-stream RGB-thermal framework that jointly performs oil-region segmentation, serviceability classification, and regression of four chemical oxidation indices (PV, p-AV, Totox, temperature) in a single forward pass. A ThermalMiT-B2 backbone with channel and spatial attention extracts thermal features, while an RGB-MAE Encoder learns chemically grounded representations via masked autoencoding and chemical alignment. Dual-Encoder DANN adversarially regularizes both streams against video identity via Gradient Reversal Layers, and FiLM fusion bridges thermal structure with RGB chemical context. On 7,226 paired frames across 28 frying videos, FryNet achieves 98.97% mIoU, 100% classification accuracy, and 2.32 mean regression MAE, outperforming all seven baselines.

Toqi Tahamid Sarker, Mohamed G Embaby, Khaled R Ahmed et al.

Methane emissions from livestock, particularly cattle, significantly contribute to climate change. Effective methane emission mitigation strategies are crucial as the global population and demand for livestock products increase. We introduce Gasformer, a novel semantic segmentation architecture for detecting low-flow rate methane emissions from livestock, and controlled release experiments using optical gas imaging. We present two unique datasets captured with a FLIR GF77 OGI camera. Gasformer leverages a Mix Vision Transformer encoder and a Light-Ham decoder to generate multi-scale features and refine segmentation maps. Gasformer outperforms other state-of-the-art models on both datasets, demonstrating its effectiveness in detecting and segmenting methane plumes in controlled and real-world scenarios. On the livestock dataset, Gasformer achieves mIoU of 88.56%, surpassing other state-of-the-art models. Materials are available at: github.com/toqitahamid/Gasformer.

Taminul Islam, Toqi Tahamid Sarker, Khaled R Ahmed et al.

Weed management remains a critical challenge in agriculture, where weeds compete with crops for essential resources, leading to significant yield losses. Accurate detection of weeds at various growth stages is crucial for effective management yet challenging for farmers, as it requires identifying different species at multiple growth phases. This research addresses these challenges by utilizing advanced object detection models, specifically, the Detection Transformer (DETR) with a ResNet50 backbone and RetinaNet with a ResNeXt101 backbone, to identify and classify 16 weed species of economic concern across 174 classes, spanning their 11 weeks growth stages from seedling to maturity. A robust dataset comprising 203,567 images was developed, meticulously labeled by species and growth stage. The models were rigorously trained and evaluated, with RetinaNet demonstrating superior performance, achieving a mean Average Precision (mAP) of 0.907 on the training set and 0.904 on the test set, compared to DETR's mAP of 0.854 and 0.840, respectively. RetinaNet also outperformed DETR in recall and inference speed of 7.28 FPS, making it more suitable for real time applications. Both models showed improved accuracy as plants matured. This research provides crucial insights for developing precise, sustainable, and automated weed management strategies, paving the way for real time species specific detection systems and advancing AI-assisted agriculture through continued innovation in model development and early detection accuracy.

Toqi Tahamid Sarker, Taminul Islam, Khaled R Ahmed

Analyzing and detecting cannabis seed variants is crucial for the agriculture industry. It enables precision breeding, allowing cultivators to selectively enhance desirable traits. Accurate identification of seed variants also ensures regulatory compliance, facilitating the cultivation of specific cannabis strains with defined characteristics, ultimately improving agricultural productivity and meeting diverse market demands. This paper presents a study on cannabis seed variant detection by employing a state-of-the-art object detection model Faster R-CNN. This study implemented the model on a locally sourced cannabis seed dataset in Thailand, comprising 17 distinct classes. We evaluate six Faster R-CNN models by comparing performance on various metrics and achieving a mAP score of 94.08\% and an F1 score of 95.66\%. This paper presents the first known application of deep neural network object detection models to the novel task of visually identifying cannabis seed types.

Toqi Tahamid Sarker, Mohamed Embaby, Taminul Islam et al.

Livestock methane emissions represent 32% of human-caused methane production, making automated monitoring critical for climate mitigation strategies. We introduce GasTwinFormer, a hybrid vision transformer for real-time methane emission segmentation and dietary classification in optical gas imaging through a novel Mix Twin encoder alternating between spatially-reduced global attention and locally-grouped attention mechanisms. Our architecture incorporates a lightweight LR-ASPP decoder for multi-scale feature aggregation and enables simultaneous methane segmentation and dietary classification in a unified framework. We contribute the first comprehensive beef cattle methane emission dataset using OGI, containing 11,694 annotated frames across three dietary treatments. GasTwinFormer achieves 74.47% mIoU and 83.63% mF1 for segmentation while maintaining exceptional efficiency with only 3.348M parameters, 3.428G FLOPs, and 114.9 FPS inference speed. Additionally, our method achieves perfect dietary classification accuracy (100%), demonstrating the effectiveness of leveraging diet-emission correlations. Extensive ablation studies validate each architectural component, establishing GasTwinFormer as a practical solution for real-time livestock emission monitoring. Please see our project page at gastwinformer.github.io.

Toqi Tahamid Sarker, Khaled R Ahmed, Taminul Islam et al.

Weed management represents a critical challenge in agriculture, significantly impacting crop yields and requiring substantial resources for control. Effective weed monitoring and analysis strategies are crucial for implementing sustainable agricultural practices and site-specific management approaches. We introduce WeedSense, a novel multi-task learning architecture for comprehensive weed analysis that jointly performs semantic segmentation, height estimation, and growth stage classification. We present a unique dataset capturing 16 weed species over an 11-week growth cycle with pixel-level annotations, height measurements, and temporal labels. WeedSense leverages a dual-path encoder incorporating Universal Inverted Bottleneck blocks and a Multi-Task Bifurcated Decoder with transformer-based feature fusion to generate multi-scale features and enable simultaneous prediction across multiple tasks. WeedSense outperforms other state-of-the-art models on our comprehensive evaluation. On our multi-task dataset, WeedSense achieves mIoU of 89.78% for segmentation, 1.67cm MAE for height estimation, and 99.99% accuracy for growth stage classification while maintaining real-time inference at 160 FPS. Our multitask approach achieves 3$\times$ faster inference than sequential single-task execution and uses 32.4% fewer parameters. Please see our project page at weedsense.github.io.

Taminul Islam, Toqi Tahamid Sarker, Mohamed G Embaby et al.

Carbon dioxide (CO$_2$) emissions are critical indicators of both environmental impact and various industrial processes, including livestock management. We introduce CarboFormer, a lightweight semantic segmentation framework for Optical Gas Imaging (OGI), designed to detect and quantify CO$_2$ emissions across diverse applications. Our approach integrates an optimized encoder-decoder architecture with specialized multi-scale feature fusion and auxiliary supervision strategies to effectively model both local details and global relationships in gas plume imagery while achieving competitive accuracy with minimal computational overhead for resource-constrained environments. We contribute two novel datasets: (1) the Controlled Carbon Dioxide Release (CCR) dataset, which simulates gas leaks with systematically varied flow rates (10-100 SCCM), and (2) the Real Time Ankom (RTA) dataset, focusing on emissions from dairy cow rumen fluid in vitro experiments. Extensive evaluations demonstrate that CarboFormer achieves competitive performance with 84.88\% mIoU on CCR and 92.98\% mIoU on RTA, while maintaining computational efficiency with only 5.07M parameters and operating at 84.68 FPS. The model shows particular effectiveness in challenging low-flow scenarios and significantly outperforms other lightweight methods like SegFormer-B0 (83.36\% mIoU on CCR) and SegNeXt (82.55\% mIoU on CCR), making it suitable for real-time monitoring on resource-constrained platforms such as programmable drones. Our work advances both environmental sensing and precision livestock management by providing robust and efficient tools for CO$_2$ emission analysis.

Toqi Tahamid Sarker, Juan M. Banda

With the advent of deep learning for computer vision tasks, the need for accurately labeled data in large volumes is vital for any application. The increasingly available large amounts of solar image data generated by the Solar Dynamic Observatory (SDO) mission make this domain particularly interesting for the development and testing of deep learning systems. The currently available labeled solar data is generated by the SDO mission's Feature Finding Team's (FFT) specialized detection modules. The major drawback of these modules is that detection and labeling is performed with a cadence of every 4 to 12 hours, depending on the module. Since SDO image data products are created every 10 seconds, there is a considerable gap between labeled observations and the continuous data stream. In order to address this shortcoming, we trained a deep regression network to track the movement of two solar phenomena: Active Region and Coronal Hole events. To the best of our knowledge, this is the first attempt of solar event tracking using a deep learning approach. Since it is impossible to fully evaluate the performance of the suggested event tracks with the original data (only partial ground truth is available), we demonstrate with several metrics the effectiveness of our approach. With the purpose of generating continuously labeled solar image data, we present this feasibility analysis showing the great promise of deep regression networks for this task.