Catalina A. Vallejos

Begoña B. Sierra, Colin McLean, Peter S. Hall et al.

Quantifying out-of-sample discrimination performance for time-to-event outcomes is a fundamental step for model evaluation and selection in the context of predictive modelling. The concordance index, or C-index, is a widely used metric for this purpose, particularly with the growing development of machine learning methods. Beyond differences between proposed C-index estimators (e.g. Harrell's, Uno's and Antolini's), we demonstrate the existence of a C-index multiverse among available R and python software, where seemingly equal implementations can yield different results. This can undermine reproducibility and complicate fair comparisons across models and studies. Key variation sources include tie handling and adjustment to censoring. Additionally, the absence of a standardised approach to summarise risk from survival distributions, result in another source of variation dependent on input types. We demonstrate the consequences of the C-index multiverse when quantifying predictive performance for several survival models (from Cox proportional hazards to recent deep learning approaches) on publicly available breast cancer data, and semi-synthetic examples. Our work emphasises the need for better reporting to improve transparency and reproducibility. This article aims to be a useful guideline, helping analysts when navigating the multiverse, providing unified documentation and highlighting potential pitfalls of existing software. All code is publicly available at: www.github.com/BBolosSierra/CindexMultiverse.

Louis Chislett, Catalina A. Vallejos, Timothy I. Cannings et al.

Prediction models frequently face the challenge of concept drift, in which the underlying data distribution changes over time, weakening performance. Examples can include models which predict loan default, or those used in healthcare contexts. Typical management strategies involve regular model updates or updates triggered by concept drift detection. However, these simple policies do not necessarily balance the cost of model updating with improved classifier performance. We present AMUSE (Adaptive Model Updating using a Simulated Environment), a novel method leveraging reinforcement learning trained within a simulated data generating environment, to determine update timings for classifiers. The optimal updating policy depends on the current data generating process and ongoing drift process. Our key idea is that we can train an arbitrarily complex model updating policy by creating a training environment in which possible episodes of drift are simulated by a parametric model, which represents expectations of possible drift patterns. As a result, AMUSE proactively recommends updates based on estimated performance improvements, learning a policy that balances maintaining model performance with minimizing update costs. Empirical results confirm the effectiveness of AMUSE in simulated data.

Diego Arenas, Jon Atkins, Claire Austin et al.

We present a policy and process framework for secure environments for productive data science research projects at scale, by combining prevailing data security threat and risk profiles into five sensitivity tiers, and, at each tier, specifying recommended policies for data classification, data ingress, software ingress, data egress, user access, user device control, and analysis environments. By presenting design patterns for security choices for each tier, and using software defined infrastructure so that a different, independent, secure research environment can be instantiated for each project appropriate to its classification, we hope to maximise researcher productivity and minimise risk, allowing research organisations to operate with confidence.