Mohamed Embaby

Taminul Islam, Abdellah Lakhssassi, Toqi Tahamid Sarker et al.

Quantifying exhaled CO2 from free-roaming cattle is both a direct indicator of rumen metabolic state and a prerequisite for farm-scale carbon accounting, yet no existing system can deliver continuous, spatially resolved measurements without physical confinement or contact. We present TRACE (Thermal Recognition Attentive-Framework for CO2 Emissions from Livestock), the first unified framework to jointly address per-frame CO2 plume segmentation and clip-level emission flux classification from mid-wave infrared (MWIR) thermal video. TRACE contributes three domain-specific advances: a Thermal Gas-Aware Attention (TGAA) encoder that incorporates per-pixel gas intensity as a spatial supervisory signal to direct self-attention toward high-emission regions at each encoder stage; an Attention-based Temporal Fusion (ATF) module that captures breath-cycle dynamics through structured cross-frame attention for sequence-level flux classification; and a four-stage progressive training curriculum that couples both objectives while preventing gradient interference. Benchmarked against fifteen state-of-the-art models on the CO2 Farm Thermal Gas Dataset, TRACE achieves an mIoU of 0.998 and the best result on every segmentation and classification metric simultaneously, outperforming domain-specific gas segmenters with several times more parameters and surpassing all baselines in flux classification. Ablation studies confirm that each component is individually essential: gas-conditioned attention alone determines precise plume boundary localization, and temporal reasoning is indispensable for flux-level discrimination. TRACE establishes a practical path toward non-invasive, continuous, per-animal CO2 monitoring from overhead thermal cameras at commercial scale. Codes are available at https://github.com/taminulislam/trace.

Taminul Islam, Toqi Tahamid Sarker, Mohamed Embaby et al.

Ruminal acidosis is a prevalent metabolic disorder in dairy cattle causing significant economic losses and animal welfare concerns. Current diagnostic methods rely on invasive pH measurement, limiting scalability for continuous monitoring. We present FUME (Fused Unified Multi-gas Emission Network), the first deep learning approach for rumen acidosis detection from dual-gas optical imaging under in vitro conditions. Our method leverages complementary carbon dioxide (CO2) and methane (CH4) emission patterns captured by infrared cameras to classify rumen health into Healthy, Transitional, and Acidotic states. FUME employs a lightweight dual-stream architecture with weight-shared encoders, modality-specific self-attention, and channel attention fusion, jointly optimizing gas plume segmentation and classification of dairy cattle health. We introduce the first dual-gas OGI dataset comprising 8,967 annotated frames across six pH levels with pixel-level segmentation masks. Experiments demonstrate that FUME achieves 80.99% mIoU and 98.82% classification accuracy while using only 1.28M parameters and 1.97G MACs--outperforming state-of-the-art methods in segmentation quality with 10x lower computational cost. Ablation studies reveal that CO2 provides the primary discriminative signal and dual-task learning is essential for optimal performance. Our work establishes the feasibility of gas emission-based livestock health monitoring, paving the way for practical, in vitro acidosis detection systems. Codes are available at https://github.com/taminulislam/fume.

Toqi Tahamid Sarker, Mohamed Embaby, Taminul Islam et al.

Livestock methane emissions represent 32% of human-caused methane production, making automated monitoring critical for climate mitigation strategies. We introduce GasTwinFormer, a hybrid vision transformer for real-time methane emission segmentation and dietary classification in optical gas imaging through a novel Mix Twin encoder alternating between spatially-reduced global attention and locally-grouped attention mechanisms. Our architecture incorporates a lightweight LR-ASPP decoder for multi-scale feature aggregation and enables simultaneous methane segmentation and dietary classification in a unified framework. We contribute the first comprehensive beef cattle methane emission dataset using OGI, containing 11,694 annotated frames across three dietary treatments. GasTwinFormer achieves 74.47% mIoU and 83.63% mF1 for segmentation while maintaining exceptional efficiency with only 3.348M parameters, 3.428G FLOPs, and 114.9 FPS inference speed. Additionally, our method achieves perfect dietary classification accuracy (100%), demonstrating the effectiveness of leveraging diet-emission correlations. Extensive ablation studies validate each architectural component, establishing GasTwinFormer as a practical solution for real-time livestock emission monitoring. Please see our project page at gastwinformer.github.io.