Daniel Weiskopf

Mengjie Fan, Jinlu Yu, Daniel Weiskopf et al.

We introduce a visual analysis method for multiple causal graphs with different outcome variables, namely, multi-outcome causal graphs. Multi-outcome causal graphs are important in healthcare for understanding multimorbidity and comorbidity. To support the visual analysis, we collaborated with medical experts to devise two comparative visualization techniques at different stages of the analysis process. First, a progressive visualization method is proposed for comparing multiple state-of-the-art causal discovery algorithms. The method can handle mixed-type datasets comprising both continuous and categorical variables and assist in the creation of a fine-tuned causal graph of a single outcome. Second, a comparative graph layout technique and specialized visual encodings are devised for the quick comparison of multiple causal graphs. In our visual analysis approach, analysts start by building individual causal graphs for each outcome variable, and then, multi-outcome causal graphs are generated and visualized with our comparative technique for analyzing differences and commonalities of these causal graphs. Evaluation includes quantitative measurements on benchmark datasets, a case study with a medical expert, and expert user studies with real-world health research data.

Luca Reichmann, David Hägele, Daniel Weiskopf

Dimensionality reduction (DR) is a well-established approach for the visualization of high-dimensional data sets. While DR methods are often applied to typical DR benchmark data sets in the literature, they might suffer from high runtime complexity and memory requirements, making them unsuitable for large data visualization especially in environments outside of high-performance computing. To perform DR on large data sets, we propose the use of out-of-sample extensions. Such extensions allow inserting new data into existing projections, which we leverage to iteratively project data into a reference projection that consists only of a small manageable subset. This process makes it possible to perform DR out-of-core on large data, which would otherwise not be possible due to memory and runtime limitations. For metric multidimensional scaling (MDS), we contribute an implementation with out-of-sample projection capability since typical software libraries do not support it. We provide an evaluation of the projection quality of five common DR algorithms (MDS, PCA, t-SNE, UMAP, and autoencoders) using quality metrics from the literature and analyze the trade-off between the size of the reference set and projection quality. The runtime behavior of the algorithms is also quantified with respect to reference set size, out-of-sample batch size, and dimensionality of the data sets. Furthermore, we compare the out-of-sample approach to other recently introduced DR methods, such as PaCMAP and TriMAP, which claim to handle larger data sets than traditional approaches. To showcase the usefulness of DR on this large scale, we contribute a use case where we analyze ensembles of streamlines amounting to one billion projected instances.

Daniel Klötzl, Tim Krake, Frank Heyen et al.

The depiction of scanpaths from mobile eye-tracking recordings by thumbnails from the stimulus allows the application of visual computing to detect areas of interest in an unsupervised way. We suggest using nonnegative matrix factorization (NMF) to identify such areas in stimuli. For a user-defined integer k, NMF produces an explainable decomposition into k components, each consisting of a spatial representation associated with a temporal indicator. In the context of multiple eye-tracking recordings, this leads to k spatial representations, where the temporal indicator highlights the appearance within recordings. The choice of k provides an opportunity to control the refinement of the decomposition, i.e., the number of areas to detect. We combine our NMF-based approach with visualization techniques to enable an exploratory analysis of multiple recordings. Finally, we demonstrate the usefulness of our approach with mobile eye-tracking data of an art gallery.

Daniel Klötzl, Ozan Tastekin, David Hägele et al.

Multidimensional data is often associated with uncertainties that are not well-described by normal distributions. In this work, we describe how such distributions can be projected to a low-dimensional space using uncertainty-aware principal component analysis (UAPCA). We propose to model multidimensional distributions using Gaussian mixture models (GMMs) and derive the projection from a general formulation that allows projecting arbitrary probability density functions. The low-dimensional projections of the densities exhibit more details about the distributions and represent them more faithfully compared to UAPCA mappings. Further, we support including user-defined weights between the different distributions, which allows for varying the importance of the multidimensional distributions. We evaluate our approach by comparing the distributions in low-dimensional space obtained by our method and UAPCA to those obtained by sample-based projections.

David Hägele, Moataz Abdelaal, Ozgur S. Oguz et al.

Nonlinear programming targets nonlinear optimization with constraints, which is a generic yet complex methodology involving humans for problem modeling and algorithms for problem solving. We address the particularly hard challenge of supporting domain experts in handling, understanding, and trouble-shooting high-dimensional optimization with a large number of constraints. Leveraging visual analytics, users are supported in exploring the computation process of nonlinear constraint optimization. Our system was designed for robot motion planning problems and developed in tight collaboration with domain experts in nonlinear programming and robotics. We report on the experiences from this design study, illustrate the usefulness for relevant example cases, and discuss the extension to visual analytics for nonlinear programming in general.

Tim Krake, Stefan Reinhardt, Marcel Hlawatsch et al.

Dynamic Mode Decomposition (DMD) is a data-driven and model-free decomposition technique. It is suitable for revealing spatio-temporal features of both numerically and experimentally acquired data. Conceptually, DMD performs a low-dimensional spectral decomposition of the data into the following components: The modes, called DMD modes, encode the spatial contribution of the decomposition, whereas the DMD amplitudes specify their impact. Each associated eigenvalue, referred to as DMD eigenvalue, characterizes the frequency and growth rate of the DMD mode. In this paper, we demonstrate how the components of DMD can be utilized to obtain temporal and spatial information from time-dependent flow fields. We begin with the theoretical background of DMD and its application to unsteady flow. Next, we examine the conventional process with DMD mathematically and put it in relationship to the discrete Fourier transform. Our analysis shows that the current use of DMD components has several drawbacks. To resolve these problems we adjust the components and provide new and meaningful insights into the decomposition: We show that our improved components describe the flow more adequately. Moreover, we remove redundancies in the decomposition and clarify the interplay between components, allowing users to understand the impact of components. These new representations ,which respect the spatio-temporal character of DMD, enable two clustering methods that segment the flow into physically relevant sections and can therefore be used for the selection of DMD components. With a number of typical examples, we demonstrate that the combination of these techniques allow new insights with DMD for unsteady flow.

Leonel Merino, Magdalena Schwarzl, Matthias Kraus et al.

We present a systematic review of 458 papers that report on evaluations in mixed and augmented reality (MR/AR) published in ISMAR, CHI, IEEE VR, and UIST over a span of 11 years (2009-2019). Our goal is to provide guidance for future evaluations of MR/AR approaches. To this end, we characterize publications by paper type (e.g., technique, design study), research topic (e.g., tracking, rendering), evaluation scenario (e.g., algorithm performance, user performance), cognitive aspects (e.g., perception, emotion), and the context in which evaluations were conducted (e.g., lab vs. in-the-wild). We found a strong coupling of types, topics, and scenarios. We observe two groups: (a) technology-centric performance evaluations of algorithms that focus on improving tracking, displays, reconstruction, rendering, and calibration, and (b) human-centric studies that analyze implications of applications and design, human factors on perception, usability, decision making, emotion, and attention. Amongst the 458 papers, we identified 248 user studies that involved 5,761 participants in total, of whom only 1,619 were identified as female. We identified 43 data collection methods used to analyze 10 cognitive aspects. We found nine objective methods, and eight methods that support qualitative analysis. A majority (216/248) of user studies are conducted in a laboratory setting. Often (138/248), such studies involve participants in a static way. However, we also found a fair number (30/248) of in-the-wild studies that involve participants in a mobile fashion. We consider this paper to be relevant to academia and industry alike in presenting the state-of-the-art and guiding the steps to designing, conducting, and analyzing results of evaluations in MR/AR.

Kuno Kurzhals, Michael Burch, Daniel Weiskopf

Technical progress in hardware and software enables us to record gaze data in everyday situations and over long time spans. Among a multitude of research opportunities, this technology enables visualization researchers to catch a glimpse behind performance measures and into the perceptual and cognitive processes of people using visualization techniques. The majority of eye tracking studies performed for visualization research is limited to the analysis of gaze distributions and aggregated statistics, thus only covering a small portion of insights that can be derived from gaze data. We argue that incorporating theories and methodology from psychology and cognitive science will benefit the design and evaluation of eye tracking experiments for visualization. This position paper outlines our experiences with eye tracking in visualization and states the benefits that an interdisciplinary research field on visualization psychology might bring for better understanding how people interpret visualizations.

Karim Armanious, Sherif Abdulatif, Wenbin Shi et al.

The concept of biological age (BA), although important in clinical practice, is hard to grasp mainly due to the lack of a clearly defined reference standard. For specific applications, especially in pediatrics, medical image data are used for BA estimation in a routine clinical context. Beyond this young age group, BA estimation is mostly restricted to whole-body assessment using non-imaging indicators such as blood biomarkers, genetic and cellular data. However, various organ systems may exhibit different aging characteristics due to lifestyle and genetic factors. Thus, a whole-body assessment of the BA does not reflect the deviations of aging behavior between organs. To this end, we propose a new imaging-based framework for organ-specific BA estimation. In this initial study, we focus mainly on brain MRI. As a first step, we introduce a chronological age (CA) estimation framework using deep convolutional neural networks (Age-Net). We quantitatively assess the performance of this framework in comparison to existing state-of-the-art CA estimation approaches. Furthermore, we expand upon Age-Net with a novel iterative data-cleaning algorithm to segregate atypical-aging patients (BA $\not \approx$ CA) from the given population. We hypothesize that the remaining population should approximate the true BA behavior. We apply the proposed methodology on a brain magnetic resonance image (MRI) dataset containing healthy individuals as well as Alzheimer's patients with different dementia ratings. We demonstrate the correlation between the predicted BAs and the expected cognitive deterioration in Alzheimer's patients. A statistical and visualization-based analysis has provided evidence regarding the potential and current challenges of the proposed methodology.

Rongzheng Bian, Yumeng Xue, Liang Zhou et al.

We propose a visualization method to understand the effect of multidimensional projection on local subspaces, using implicit function differentiation. Here, we understand the local subspace as the multidimensional local neighborhood of data points. Existing methods focus on the projection of multidimensional data points, and the neighborhood information is ignored. Our method is able to analyze the shape and directional information of the local subspace to gain more insights into the global structure of the data through the perception of local structures. Local subspaces are fitted by multidimensional ellipses that are spanned by basis vectors. An accurate and efficient vector transformation method is proposed based on analytical differentiation of multidimensional projections formulated as implicit functions. The results are visualized as glyphs and analyzed using a full set of specifically-designed interactions supported in our efficient web-based visualization tool. The usefulness of our method is demonstrated using various multi- and high-dimensional benchmark datasets. Our implicit differentiation vector transformation is evaluated through numerical comparisons; the overall method is evaluated through exploration examples and use cases.

Zhuochen Jin, Shunan Guo, Nan Chen et al.

Causality is crucial to understanding the mechanisms behind complex systems and making decisions that lead to intended outcomes. Event sequence data is widely collected from many real-world processes, such as electronic health records, web clickstreams, and financial transactions, which transmit a great deal of information reflecting the causal relations among event types. Unfortunately, recovering causalities from observational event sequences is challenging, as the heterogeneous and high-dimensional event variables are often connected to rather complex underlying event excitation mechanisms that are hard to infer from limited observations. Many existing automated causal analysis techniques suffer from poor explainability and fail to include an adequate amount of human knowledge. In this paper, we introduce a visual analytics method for recovering causalities in event sequence data. We extend the Granger causality analysis algorithm on Hawkes processes to incorporate user feedback into causal model refinement. The visualization system includes an interactive causal analysis framework that supports bottom-up causal exploration, iterative causal verification and refinement, and causal comparison through a set of novel visualizations and interactions. We report two forms of evaluation: a quantitative evaluation of the model improvements resulting from the user-feedback mechanism, and a qualitative evaluation through case studies in different application domains to demonstrate the usefulness of the system.

Leonel Merino, Boris Sotomayor-Gómez, Xingyao Yu et al.

We introduce AVAR, a prototypical implementation of an agile situated visualization (SV) toolkit targeting liveness, integration, and expressiveness. We report on results of an exploratory study with AVAR and seven expert users. In it, participants wore a Microsoft HoloLens device and used a Bluetooth keyboard to program a visualization script for a given dataset. To support our analysis, we (i) video recorded sessions, (ii) tracked users' interactions, and (iii) collected data of participants' impressions. Our prototype confirms that agile SV is feasible. That is, liveness boosted participants' engagement when programming an SV, and so, the sessions were highly interactive and participants were willing to spend much time using our toolkit (i.e., median >= 1.5 hours). Participants used our integrated toolkit to deal with data transformations, visual mappings, and view transformations without leaving the immersive environment. Finally, participants benefited from our expressive toolkit and employed multiple of the available features when programming an SV.

Ayush Kumar, Rudolf Netzel, Michael Burch et al.

We present an algorithmic and visual grouping of participants and eye-tracking metrics derived from recorded eye-tracking data. Our method utilizes two well-established visualization concepts. First, parallel coordinates are used to provide an overview of the used metrics, their interactions, and similarities, which helps select suitable metrics that describe characteristics of the eye-tracking data. Furthermore, parallel coordinates plots enable an analyst to test the effects of creating a combination of a subset of metrics resulting in a newly derived eye-tracking metric. Second, a similarity matrix visualization is used to visually represent the affine combination of metrics utilizing an algorithmic grouping of subjects that leads to distinct visual groups of similar behavior. To keep the diagrams of the matrix visualization simple and understandable, we visually encode our eye-tracking data into the cells of a similarity matrix of participants. The algorithmic grouping is performed with a clustering based on the affine combination of metrics, which is also the basis for the similarity value computation of the similarity matrix. To illustrate the usefulness of our visualization, we applied it to an eye-tracking data set involving the reading behavior of metro maps of up to 40 participants. Finally, we discuss limitations and scalability issues of the approach focusing on visual and perceptual issues.

Leonel Merino, Ekaterina Kozlova, Oscar Nierstrasz et al.

Although many tools have been presented in the research literature of software visualization, there is little evidence of their adoption. To choose a suitable visualization tool, practitioners need to analyze various characteristics of tools such as their supported software concerns and level of maturity. Indeed, some tools can be prototypes for which the lifespan is expected to be short, whereas others can be fairly mature products that are maintained for a longer time. Although such characteristics are often described in papers, we conjecture that practitioners willing to adopt software visualizations require additional support to discover suitable visualization tools. In this paper, we elaborate on our efforts to provide such support. To this end, we systematically analyzed research papers in the literature of software visualization and curated a catalog of 70 available tools that employ various visualization techniques to support the analysis of multiple software concerns. We further encapsulate these characteristics in an ontology. VISON, our software visualization ontology, captures these semantics as concepts and relationships. We report on early results of usage scenarios that demonstrate how the ontology can support (i) developers to find suitable tools for particular development concerns, and (ii) researchers who propose new software visualization tools to identify a baseline tool for a controlled experiment.

Daniel Weiskopf

Appropriate evaluation is a key component in visualization research. It is typically based on empirical studies that assess visualization components or complete systems. While such studies often include the user of the visualization, empirical research is not necessarily restricted to user studies but may also address the technical performance of a visualization system such as its computational speed or memory consumption. Any such empirical experiment faces the issue that the underlying visualization is becoming increasingly sophisticated, leading to an increasingly difficult evaluation in complex environments. Therefore, many of the established methods of empirical studies can no longer capture the full complexity of the evaluation. One promising solution is the use of data-rich observations that we can acquire during studies to obtain more reliable interpretations of empirical research. For example, we have been witnessing an increasing availability and use of physiological sensor information from eye tracking, electrodermal activity sensors, electroencephalography, etc. Other examples are various kinds of logs of user activities such as mouse, keyboard, or touch interaction. Such data-rich empirical studies promise to be especially useful for studies in the wild and similar scenarios outside of the controlled laboratory environment. However, with the growing availability of large, complex, time-dependent, heterogeneous, and unstructured observational data, we are facing the new challenge of how we can analyze such data. This challenge can be addressed by establishing the subfield of visualization for visualization (Vis4Vis): visualization as a means of analyzing and communicating data from empirical studies to advance visualization research.

Ayush Kumar, Anjul Tyagi, Michael Burch et al.

Yarbus' claim to decode the observer's task from eye movements has received mixed reactions. In this paper, we have supported the hypothesis that it is possible to decode the task. We conducted an exploratory analysis on the dataset by projecting features and data points into a scatter plot to visualize the nuance properties for each task. Following this analysis, we eliminated highly correlated features before training an SVM and Ada Boosting classifier to predict the tasks from this filtered eye movements data. We achieve an accuracy of 95.4% on this task classification problem and hence, support the hypothesis that task classification is possible from a user's eye movement data.

Haris Mumtaz, Shahid Latif, Fabian Beck et al.

Good code quality is a prerequisite for efficiently developing maintainable software. In this paper, we present a novel approach to generate exploranative (explanatory and exploratory) data-driven documents that report code quality in an interactive, exploratory environment. We employ a template-based natural language generation method to create textual explanations about the code quality, dependent on data from software metrics. The interactive document is enriched by different kinds of visualization, including parallel coordinates plots and scatterplots for data exploration and graphics embedded into text. We devise an interaction model that allows users to explore code quality with consistent linking between text and visualizations; through integrated explanatory text, users are taught background knowledge about code quality aspects. Our approach to interactive documents was developed in a design study process that included software engineering and visual analytics experts. Although the solution is specific to the software engineering scenario, we discuss how the concept could generalize to multivariate data and report lessons learned in a broader scope.

Jochen Görtler, Thilo Spinner, Dirk Streeb et al.

We present a technique to perform dimensionality reduction on data that is subject to uncertainty. Our method is a generalization of traditional principal component analysis (PCA) to multivariate probability distributions. In comparison to non-linear methods, linear dimensionality reduction techniques have the advantage that the characteristics of such probability distributions remain intact after projection. We derive a representation of the PCA sample covariance matrix that respects potential uncertainty in each of the inputs, building the mathematical foundation of our new method: uncertainty-aware PCA. In addition to the accuracy and performance gained by our approach over sampling-based strategies, our formulation allows us to perform sensitivity analysis with regard to the uncertainty in the data. For this, we propose factor traces as a novel visualization that enables to better understand the influence of uncertainty on the chosen principal components. We provide multiple examples of our technique using real-world datasets. As a special case, we show how to propagate multivariate normal distributions through PCA in closed form. Furthermore, we discuss extensions and limitations of our approach.

Leonel Merino, Mario Hess, Alexandre Bergel et al.

Developers are usually unaware of the impact of code changes to the performance of software systems. Although developers can analyze the performance of a system by executing, for instance, a performance test to compare the performance of two consecutive versions of the system, changing from a programming task to a testing task would disrupt the development flow. In this paper, we propose the use of a city visualization that dynamically provides developers with a pervasive view of the continuous performance of a system. We use an immersive augmented reality device (Microsoft HoloLens) to display our visualization and extend the integrated development environment on a computer screen to use the physical space. We report on technical details of the design and implementation of our visualization tool, and discuss early feedback that we collected of its usability. Our investigation explores a new visual metaphor to support the exploration and analysis of possibly very large and multidimensional performance data. Our initial result indicates that the city metaphor can be adequate to analyze dynamic performance data on a large and non-trivial software system.