Hamza Farooq

Muhammad Ali Shafique, Kanwal Mehreen, Muhammad Arham et al.

Developing a high-performing large language models (LLMs) for low-resource languages such as Urdu, present several challenges. These challenges include the scarcity of high-quality datasets, multilingual inconsistencies, and safety concerns. Existing multilingual LLMs often address these issues by translating large volumes of available data. However, such translations often lack quality and cultural nuance while also incurring significant costs for data curation and training. To address these issues, we propose Alif-1.0-8B-Instruct, a multilingual Urdu-English model, that tackles these challenges with a unique approach. We train the model on a high-quality, multilingual synthetic dataset (Urdu-Instruct), developed using a modified self-instruct technique. By using unique prompts and seed values for each task along with a global task pool, this dataset incorporates Urdu-native chain-of-thought based reasoning, bilingual translation, cultural relevance, and ethical safety alignments. This technique significantly enhances the comprehension of Alif-1.0-8B-Instruct model for Urdu-specific tasks. As a result, Alif-1.0-8B-Instruct, built upon the pretrained Llama-3.1-8B, demonstrates superior performance compared to Llama-3.1-8B-Instruct for Urdu specific-tasks. It also outperformed leading multilingual LLMs, including Mistral-7B-Instruct-v0.3, Qwen-2.5-7B-Instruct, and Cohere-Aya-Expanse-8B, all within a training budget of under $100. Our results demonstrate that high-performance and low-resource language LLMs can be developed efficiently and culturally aligned using our modified self-instruct approach. All datasets, models, and code are publicly available at: https://github.com/traversaal-ai/alif-urdu-llm.

Shreyas Fadnavis, Hamza Farooq, Maryam Afzali et al.

Fitting multi-exponential models to Diffusion MRI (dMRI) data has always been challenging due to various underlying complexities. In this work, we introduce a novel and robust fitting framework for the standard two-compartment IVIM microstructural model. This framework provides a significant improvement over the existing methods and helps estimate the associated diffusion and perfusion parameters of IVIM in an automatic manner. As a part of this work we provide capabilities to switch between more advanced global optimization methods such as simplicial homology (SH) and differential evolution (DE). Our experiments show that the results obtained from this simultaneous fitting procedure disentangle the model parameters in a reduced subspace. The proposed framework extends the seminal work originated in the MIX framework, with improved procedures for multi-stage fitting. This framework has been made available as an open-source Python implementation and disseminated to the community through the DIPY project.

Asim Waqas, Aakash Tripathi, Sabeen Ahmed et al.

Multi-omics research has enhanced our understanding of cancer heterogeneity and progression. Investigating molecular data through multi-omics approaches is crucial for unraveling the complex biological mechanisms underlying cancer, thereby enabling more effective diagnosis, treatment, and prevention strategies. However, predicting patient outcomes through the integration of all available multi-omics data is still an under-study research direction. Here, we present SeNMo, a foundation model that has been trained on multi-omics data across 33 cancer types. SeNMo is particularly efficient in handling multi-omics data characterized by high-width and low-length attributes. We trained SeNMo for the task of overall survival of patients using pan-cancer multi-omics data involving 33 cancer sites from the GDC. The training multi-omics data includes gene expression, DNA methylation, miRNA expression, DNA mutations, protein expression modalities, and clinical data. SeNMo was validated on two independent cohorts: Moffitt Cancer Center and CPTAC lung squamous cell carcinoma. We evaluated the model's performance in predicting patient's overall survival using the C-Index. SeNMo performed consistently well in the training regime, reflected by the validation C-Index of 0.76 on GDC's public data. In the testing regime, SeNMo performed with a C-Index of 0.758 on a held-out test set. The model showed an average accuracy of 99.8% on the task of classifying the primary cancer type on the pan-cancer test cohort. SeNMo demonstrated robust performance on the classification task of predicting the primary cancer type of patients. SeNMo further demonstrated significant performance in predicting tertiary lymph structures from multi-omics data, showing generalizability across cancer types, molecular data types, and clinical endpoints.

Ram Mohan Rao Kadiyala, Siddartha Pullakhandam, Kanwal Mehreen et al.

An ideal detection system for machine generated content is supposed to work well on any generator as many more advanced LLMs come into existence day by day. Existing systems often struggle with accurately identifying AI-generated content over shorter texts. Further, not all texts might be entirely authored by a human or LLM, hence we focused more over partial cases i.e human-LLM co-authored texts. Our paper introduces a set of models built for the task of token classification which are trained on an extensive collection of human-machine co-authored texts, which performed well over texts of unseen domains, unseen generators, texts by non-native speakers and those with adversarial inputs. We also introduce a new dataset of over 2.4M such texts mostly co-authored by several popular proprietary LLMs over 23 languages. We also present findings of our models' performance over each texts of each domain and generator. Additional findings include comparison of performance against each adversarial method, length of input texts and characteristics of generated texts compared to the original human authored texts.

Ram Mohan Rao Kadiyala, Siddartha Pullakhandam, Siddhant Gupta et al.

Large Language Models (LLMs) have shown remarkable capabilities, but their development has primarily focused on English and other high-resource languages, leaving many languages underserved. We present our latest Hindi-English bi-lingual LLM \textbf{Mantra-14B} with ~3\% average improvement in benchmark scores over both languages, outperforming models twice its size. Using a curated dataset composed of English and Hindi instruction data of 485K samples, we instruction tuned models such as Qwen-2.5-14B-Instruct and Phi-4 to improve performance over both English and Hindi. Our experiments encompassing seven different LLMs of varying parameter sizes and over 140 training attempts with varying English-Hindi training data ratios demonstrated that it is possible to significantly improve multilingual performance without compromising native performance. Further, our approach avoids resource-intensive techniques like vocabulary expansion or architectural modifications, thus keeping the model size small. Our results indicate that modest fine-tuning with culturally and locally informed data can bridge performance gaps without incurring significant computational overhead. We release our training code, datasets, and models under mit and apache licenses to aid further research towards under-represented and low-resource languages.

Ram Mohan Rao Kadiyala, Siddhant Gupta, Jebish Purbey et al.

Recent advances in large language models (LLMs) have significantly impacted data science workflows, giving rise to specialized data science agents designed to automate analytical tasks. Despite rapid adoption, systematic benchmarks evaluating the efficacy and limitations of these agents remain scarce. In this paper, we introduce a comprehensive benchmark specifically crafted to reflect real-world user interactions with data science agents by observing usage of our commercial applications. We evaluate three LLMs: Claude-4.0-Sonnet, Gemini-2.5-Flash, and OpenAI-o4-Mini across three approaches: zero-shot with context engineering, multi-step with context engineering, and with SmolAgent. Our benchmark assesses performance across a diverse set of eight data science task categories, additionally exploring the sensitivity of models to common prompting issues, such as data leakage and slightly ambiguous instructions. We further investigate the influence of temperature parameters on overall and task-specific outcomes for each model and approach. Our findings reveal distinct performance disparities among the evaluated models and methodologies, highlighting critical factors that affect practical deployment. The benchmark dataset and evaluation framework introduced herein aim to provide a foundation for future research of more robust and effective data science agents.

Asim Waqas, Ghulam Rasool, Hamza Farooq et al.

The architectures of deep artificial neural networks (DANNs) are routinely studied to improve their predictive performance. However, the relationship between the architecture of a DANN and its robustness to noise and adversarial attacks is less explored. We investigate how the robustness of DANNs relates to their underlying graph architectures or structures. This study: (1) starts by exploring the design space of architectures of DANNs using graph-theoretic robustness measures; (2) transforms the graphs to DANN architectures to train/validate/test on various image classification tasks; (3) explores the relationship between the robustness of trained DANNs against noise and adversarial attacks and the robustness of their underlying architectures estimated via graph-theoretic measures. We show that the topological entropy and Olivier-Ricci curvature of the underlying graphs can quantify the robustness performance of DANNs. The said relationship is stronger for complex tasks and large DANNs. Our work will allow autoML and neural architecture search community to explore design spaces of robust and accurate DANNs.