Ahan Gupta

Muyan Hu, Ahan Gupta, Jiachen Yuan et al.

With the widening gap between compute and memory operation latencies, data movement optimizations have become increasingly important for DNN compilation. Current optimizations such as layout transformations and operator fusion only target a subset of tensor operators and consequently miss important opportunities for reducing data movement in contemporary DNN workloads, including large language models. We introduce VTC, a novel tensor compilation framework that for the first time eliminates all unnecessary data movement by targeting the full spectrum of data movement operators. VTC proposes the concept of virtual tensors to track data movement between compute operators via index mappings rather than expensive physical data transfers to and from global memory, which can seamlessly interoperate with existing computation kernels and handle arbitrary tensor operator compositions. We also introduce a novel data movement elimination algorithm to automatically identify a profitable virtual tensor creation strategy. Evaluation on a variety of DNNs shows that VTC can outperform existing ML compilers by up to 1.93x (1.28x on average) on NVIDIA GPUs with up to 60% (17.5% on average) inference memory savings.

Ahan Gupta, Yueming Yuan, Devansh Jain et al.

Multi-head-self-attention (MHSA) mechanisms achieve state-of-the-art (SOTA) performance across natural language processing and vision tasks. However, their quadratic dependence on sequence lengths has bottlenecked inference speeds. To circumvent this bottleneck, researchers have proposed various sparse-MHSA models, where a subset of full attention is computed. Despite their promise, current sparse libraries and compilers do not support high-performance implementations for diverse sparse-MHSA patterns due to the underlying sparse formats they operate on. These formats, which are typically designed for high-performance & scientific computing applications, are either curated for extreme amounts of random sparsity (<1% non-zero values), or specific sparsity patterns. However, the sparsity patterns in sparse-MHSA are moderately sparse (10-50% non-zero values) and varied, resulting in existing sparse-formats trading off generality for performance. We bridge this gap, achieving both generality and performance, by proposing a novel sparse format: affine-compressed-sparse-row (ACSR) and supporting code-generation scheme, SPLAT, that generates high-performance implementations for diverse sparse-MHSA patterns on GPUs. Core to our proposed format and code generation algorithm is the observation that common sparse-MHSA patterns have uniquely regular geometric properties. These properties, which can be analyzed just-in-time, expose novel optimizations and tiling strategies that SPLAT exploits to generate high-performance implementations for diverse patterns. To demonstrate SPLAT's efficacy, we use it to generate code for various sparse-MHSA models, achieving geomean speedups of 2.05x and 4.05x over hand-written kernels written in triton and TVM respectively on A100 GPUs. Moreover, its interfaces are intuitive and easy to use with existing implementations of MHSA in JAX.

Ahan Gupta, Hao Guo, Yueming Yuan et al.

Many efficient $\textit{approximate}$ self-attention techniques have become prevalent since the inception of the transformer architecture. Two popular classes of these techniques are low-rank and kernel methods. Each of these methods has its strengths. We observe these strengths synergistically complement each other and exploit them to fuse low-rank and kernel methods, producing a new class of transformers: FLuRKA ($\textbf{F}$ast $\textbf{L}$ow-$\textbf{R}$ank & $\textbf{K}$ernel$ \textbf{A}$ttention). FLuRKA are highly $\textit{training-efficient}$ with faster model speeds $\textit{and}$ similar model qualities compared to constituent low-rank and kernel methods. We theoretically and empirically evaluate the speed and quality of FLuRKA. Our model speed analysis posits a variety of parameter configurations where FLuRKA exhibit speedups over low-rank and kernel approximations and our model quality analysis bounds the error of FLuRKA with respect to full-attention. Empirically, we instantiate three FLuRKA variants which experience speedups of up to 3.3x and 1.7x over low-rank and kernel methods respectively. This translates to speedups of up to 20x over models with flash-attention. Across a diverse set of tasks spanning language modeling, language understanding, long sequence modeling, machine translation, and image classification, FLuRKA achieve comparable accuracy with underlying low-rank and kernel approximations, occasionally surpassing both.

Hoa La, Ahan Gupta, Alex Morehead et al.

Protein structure prediction models such as AlphaFold3 (AF3) push the frontier of biomolecular modeling by incorporating science-informed architectural changes to the transformer architecture. However, these advances come at a steep system cost, introducing: compute- and memory-intensive operators, 2D attention mechanisms, and retrieval-augmented data pipelines, which collectively hinder the scalability of AF3 training. In this work, we present MegaFold, a cross-platform system to accelerate AF3 training. MegaFold tackles key bottlenecks through ahead-of-time caching to eliminate GPU idle time from the retrieval-augmented data pipeline, Triton-based kernels for memory-efficient EvoAttention on heterogeneous devices, and deep fusion for common and critical small operators in AF3. Evaluation on both NVIDIA H200 and AMD MI250 GPUs shows that MegaFold reduces peak memory usage of AF3 training by up to 1.23$\times$ and improves per-iteration training time by up-to 1.73$\times$ and 1.62$\times$ respectively. More importantly, MegaFold enables training on 1.35$\times$ longer sequence lengths compared to PyTorch baselines without running out-of-memory, significantly improving the scalability of modern protein folding models. We open source our code at https://github.com/Supercomputing-System-AI-Lab/MegaFold/.

Yueming Yuan, Ahan Gupta, Jianping Li et al.

Emerging expert-specialized Mixture-of-Experts (MoE) architectures, such as DeepSeek-MoE, deliver strong model quality through fine-grained expert segmentation and large top-k routing. However, their scalability is limited by substantial activation memory overhead and costly all-to-all communication. Furthermore, current MoE training systems - primarily optimized for NVIDIA GPUs - perform suboptimally on non-NVIDIA platforms, leaving significant computational potential untapped. In this work, we present X-MoE, a novel MoE training system designed to deliver scalable training performance for next-generation MoE architectures. X-MoE achieves this via several novel techniques, including efficient padding-free MoE training with cross-platform kernels, redundancy-bypassing dispatch, and hybrid parallelism with sequence-sharded MoE blocks. Our evaluation on the Frontier supercomputer, powered by AMD MI250X GPUs, shows that X-MoE scales DeepSeek-style MoEs up to 545 billion parameters across 1024 GPUs - 10x larger than the largest trainable model with existing methods under the same hardware budget, while maintaining high training throughput. The source code of X-MoE is available at https://github.com/Supercomputing-System-AI-Lab/X-MoE.

Ahan Gupta, Zhihao Wang, Neel Dani et al.

Large-language-models (LLMs) demonstrate enormous utility in long-context tasks which require processing prompts that consist of tens to hundreds of thousands of tokens. However, existing LLM training libraries do not provide easy to use abstractions to optimize for long-context training, instead focusing on optimizations for models with large parameter counts through ZeRO-3/FSDP, Tensor and Pipeline parallelism. This forces users to rewrite LLM training libraries to incorporate compositions of various complex long-context optimizations, such as sequence-parallelism, to training pipelines; a process that requires in-depth expertise, reducing developer productivity. To tackle these challenges, we introduce AutoSP: the first automated solution to automatically optimize LLM training for longer-contexts. AutoSP compiles models and applies a targeted set of optimizations: automated sequence parallelism, and long-context aware activation-checkpointing, to drastically enhance LLM trainability at negligible cost to throughput. Our evaluation demonstrates AutoSP's capability on both NVIDIA and AMD hardware, increasing training contexts by upto 2.7$\times$ and 2.5$\times$ respectively over competitive hand-written baseline at negligible cost to runtime performance.