Dongyang Kuang

Ziyi Wang, Dongyang Kuang

EEG-based emotion recognition holds significant promise for objective diagnosis of mood disorders. Graph neural networks (GNNs) have emerged as the dominant paradigm for modeling inter-channel dependencies in EEG, yet existing approaches rely on symmetric adjacency matrices derived from spatial proximity or functional correlations that fundamentally capture statistical associations rather than directed causal influences, which conflicts with the inherently asymmetric, causally-driven nature of neural information flow. To bridge this gap, we propose GL-LFGNN, a Global-Local Dual-branch Causal Graph Neural Network grounded in Liang-Kleeman information flow theory. Unlike Granger causality that merely assesses temporal precedence, our approach rigorously quantifies causal strength from a dynamical systems perspective, yielding neurophysiologically interpretable directed graphs. A dual-branch architecture further integrates whole-brain connectivity with region-specific processing aligned to established functional neuroanatomy. On the MEEG dataset, GL-LFGNN achieves 86.17% (Arousal) and 86.71% (Valence) accuracy with only 37K parameters -- approximately 10% of the current state-of-the-art -- demonstrating that principled causal modeling can simultaneously enhance interpretability, generalization, and computational efficiency. Code will be released.

Dongyang Kuang, Craig Michoski

In this work, a kernel attention module is presented for the task of EEG-based emotion classification with neural networks. The proposed module utilizes a self-attention mechanism by performing a kernel trick, demanding significantly fewer trainable parameters and computations than standard attention modules. The design also provides a scalar for quantitatively examining the amount of attention assigned during deep feature refinement, hence help better interpret a trained model. Using EEGNet as the backbone model, extensive experiments are conducted on the SEED dataset to assess the module's performance on within-subject classification tasks compared to other SOTA attention modules. Requiring only one extra parameter, the inserted module is shown to boost the base model's mean prediction accuracy up to more than 1\% across 15 subjects. A key component of the method is the interpretability of solutions, which is addressed using several different techniques, and is included throughout as part of the dependency analysis.

Dongyang Kuang, Craig Michoski, Wenting Li et al.

In this work, a parameter-efficient attention module is presented for emotion classification using a limited, or relatively small, number of electroencephalogram (EEG) signals. This module is called the Monotonicity Constrained Attention Module (MCAM) due to its capability of incorporating priors on the monotonicity when converting features' Gram matrices into attention matrices for better feature refinement. Our experiments have shown that MCAM's effectiveness is comparable to state-of-the-art attention modules in boosting the backbone network's performance in prediction while requiring less parameters. Several accompanying sensitivity analyses on trained models' prediction concerning different attacks are also performed. These attacks include various frequency domain filtering levels and gradually morphing between samples associated with multiple labels. Our results can help better understand different modules' behaviour in prediction and can provide guidance in applications where data is limited and are with noises.

Craig Michoski, Matthew Waller, Brian Sammuli et al.

Fusion energy research increasingly depends on the ability to integrate heterogeneous, multimodal datasets from high-resolution diagnostics, control systems, and multiscale simulations. The sheer volume and complexity of these datasets demand the development of new tools capable of systematically harmonizing and extracting knowledge across diverse modalities. The Data Fusion Labeler (dFL) is introduced as a unified workflow instrument that performs uncertainty-aware data harmonization, schema-compliant data fusion, and provenance-rich manual and automated labeling at scale. By embedding alignment, normalization, and labeling within a reproducible, operator-order-aware framework, dFL reduces time-to-analysis by greater than 50X (e.g., enabling >200 shots/hour to be consistently labeled rather than a handful per day), enhances label (and subsequently training) quality, and enables cross-device comparability. Case studies from DIII-D demonstrate its application to automated ELM detection and confinement regime classification, illustrating its potential as a core component of data-driven discovery, model validation, and real-time control in future burning plasma devices.

Dongyang Kuang, Xinyue Song, Craig Michoski

This study introduces a parameter-efficient Hierarchical Spatial Temporal Network (HiSTN) specifically designed for the task of emotion classification using multi-channel electroencephalogram data. The network incorporates a graph hierarchy constructed from bottom-up at various abstraction levels, offering the dual advantages of enhanced task-relevant deep feature extraction and a lightweight design. The model's effectiveness is further amplified when used in conjunction with a proposed unique label smoothing method. Comprehensive benchmark experiments reveal that this combined approach yields high, balanced performance in terms of both quantitative and qualitative predictions. HiSTN, which has approximately 1,000 parameters, achieves mean F1 scores of 96.82% (valence) and 95.62% (arousal) in subject-dependent tests on the rarely-utilized 5-classification task problem from the DREAMER dataset. In the subject-independent settings, the same model yields mean F1 scores of 78.34% for valence and 81.59% for arousal. The adoption of the Sequential Top-2 Hit Rate (Seq2HR) metric highlights the significant enhancements in terms of the balance between model's quantitative and qualitative for predictions achieved through our approach when compared to training with regular one-hot labels. These improvements surpass 50% in subject-dependent tasks and 30% in subject-independent tasks. The study also includes relevant ablation studies and case explorations to further elucidate the workings of the proposed model and enhance its interpretability.

Dongyang Kuang

In this paper, a 1d convolutional neural network is designed for classification tasks of plant leaves. This network based classifier is analyzed in two directions. In the forward direction, the proposed network can be used in two ways: a classifier and an automatic feature extractor. As a classifier, it takes the simple centroid contour distance curve as the single feature and achieves comparable performance with state-of-art methods that usually require multiple extracted features. As a feature extractor, it produces nearly linear separable features, hence can be used together with other classifiers such as support vector machines to provide better performance. The proposed network adopts simple 1d input and is generally applicable for other tasks such as classifying one dimensional time series in an end-to-end fashion without changes. Experiments on some benchmark datasets show this architecture can provide classification accuracies that are comparable or higher than some existing methods. In the backward direction, methods like gradient-weighted class activation mapping and maximum activation map of neurons in the classification layer with respect to inputs are performed to help investigate and further validate that hidden signatures helping trigger the trained classifier's specific decisions can be human interpretable. Code for the paper is available at https://github.com/dykuang/Leaf_Project.

Xiaocong Zeng, Craig Michoski, Yan Pang et al.

In this work, we address the often-overlooked issue of Timescale Dependent Label Inconsistency (TsDLI) in training neural network models for EEG-based human emotion recognition. To mitigate TsDLI and enhance model generalization and explainability, we propose two novel regularization strategies: Local Variation Loss (LVL) and Local-Global Consistency Loss (LGCL). Both methods incorporate classical mathematical principles--specifically, functions of bounded variation and commute-time distances--within a graph theoretic framework. Complementing our regularizers, we introduce a suite of new evaluation metrics that better capture the alignment between temporally local predictions and their associated global emotion labels. We validate our approach through comprehensive experiments on two widely used EEG emotion datasets, DREAMER and DEAP, across a range of neural architectures including LSTM and transformer-based models. Performance is assessed using five distinct metrics encompassing both quantitative accuracy and qualitative consistency. Results consistently show that our proposed methods outperform state-of-the-art baselines, delivering superior aggregate performance and offering a principled trade-off between interpretability and predictive power under label inconsistency. Notably, LVL achieves the best aggregate rank across all benchmarked backbones and metrics, while LGCL frequently ranks the second, highlighting the effectiveness of our framework.

Dongyang Kuang

Image registration is a fundamental step in medical image analysis. Ideally, the transformation that registers one image to another should be a diffeomorphism that is both invertible and smooth. Traditional methods like geodesic shooting approach the problem via differential geometry, with theoretical guarantees that the resulting transformation will be smooth and invertible. Most previous research using unsupervised deep neural networks for registration have used a local smoothness constraint (typically, a spatial variation loss) to address the smoothness issue. These networks usually produce non-invertible transformations with ``folding'' in multiple voxel locations, indicated by a negative determinant of the Jacobian matrix of the transformation. While using a loss function that specifically penalizes the folding is a straightforward solution, this usually requires carefully tuning the regularization strength, especially when there are also other losses. In this paper we address this problem from a different angle, by investigating possible training mechanisms that will help the network avoid negative Jacobians and produce smoother deformations. We contribute two independent ideas in this direction. Both ideas greatly reduce the number of folding locations in the predicted deformation, without making changes to the hyperparameters or the architecture used in the existing baseline registration network.

Dongyang Kuang, Tanya Schmah

We present a new unsupervised learning algorithm, "FAIM", for 3D medical image registration. With a different architecture than the popular "U-net", the network takes a pair of full image volumes and predicts the displacement fields needed to register source to target. Compared with "U-net" based registration networks such as VoxelMorph, FAIM has fewer trainable parameters but can achieve higher registration accuracy as judged by Dice score on region labels in the Mindboggle-101 dataset. Moreover, with the proposed penalty loss on negative Jacobian determinants, FAIM produces deformations with many fewer "foldings", i.e. regions of non-invertibility where the surface folds over itself. In our experiment, we varied the strength of this penalty and investigated changes in registration accuracy and non-invertibility in terms of number of "folding" locations. We found that FAIM is able to maintain both the advantages of higher accuracy and fewer "folding" locations over VoxelMorph, over a range of hyper-parameters (with the same values used for both networks). Further, when trading off registration accuracy for better invertibility, FAIM required less sacrifice of registration accuracy. Codes for this paper will be released upon publication.

S. Huzurbazar, Long Lee, Dongyang Kuang

We study a class of mathematical and statistical algorithms with the aim of establishing a computer-based framework for fast and reliable automatic abnormality detection on landmark represented image templates. Under this framework, we apply a landmark-based algorithm for finding a group average as an estimator that is said to best represent the common features of the group in study. This algorithm extracts information of momentum at each landmark through the process of template matching. If ever converges, the proposed algorithm produces a local coordinate system for each member of the observing group, in terms of the residual momentum. We use a Bayesian approach on the collected residual momentum representations for making inference. For illustration, we apply this framework to a small database of brain images for detecting structure abnormality. The brain structure changes identified by our framework are highly consistent with studies in the literature.