Marina Spivak

Misha Padidar, Teresa Huang, Andrew Giuliani et al.

Stellarators are a prospective class of fusion-based power plants that confine a hot plasma with three-dimensional magnetic fields. Typically framed as a PDE-constrained optimization problem, stellarator design is a time-consuming process that can take hours to solve on a computing cluster. Developing fast methods for designing stellarators is crucial for advancing fusion research. Given the recent development of large datasets of optimized stellarators, machine learning approaches have emerged as a potential candidate. Motivated by this, we present an open inverse problem to the machine learning community: to rapidly generate high-quality stellarator designs which have a set of desirable characteristics. As a case study in the problem space, we train a conditional diffusion model on data from the QUASR database to generate quasisymmetric stellarator designs with desirable characteristics (aspect ratio and mean rotational transform). The diffusion model is applied to design stellarators with characteristics not seen during training. We provide evaluation protocols and show that many of the generated stellarators exhibit solid performance: less than 5% deviation from quasisymmetry and the target characteristics. The modest deviation from quasisymmetry highlights an opportunity to reach the sub 1% target. Beyond the case study, we share multiple promising avenues for generative modeling to advance stellarator design.

Alex Barnett, Leslie Greengard, Andras Pataki et al.

Determining the three-dimensional structure of proteins and protein complexes at atomic resolution is a fundamental task in structural biology. Over the last decade, remarkable progress has been made using "single particle" cryo-electron microscopy (cryo-EM) for this purpose. In cryo-EM, hundreds of thousands of two-dimensional images are obtained of individual copies of the same particle, each held in a thin sheet of ice at some unknown orientation. Each image corresponds to the noisy projection of the particle's electron-scattering density. The reconstruction of a high-resolution image from this data is typically formulated as a nonlinear, non-convex optimization problem for unknowns which encode the angular pose and lateral offset of each particle. Since there are hundreds of thousands of such parameters, this leads to a very CPU-intensive task---limiting both the number of particle images which can be processed and the number of independent reconstructions which can be carried out for the purpose of statistical validation. Here, we propose a deterministic method for high-resolution reconstruction that operates in an ab initio manner---that is, without the need for an initial guess. It requires a predictable and relatively modest amount of computational effort, by marching out radially in the Fourier domain from low to high frequency, increasing the resolution by a fixed increment at each step.