Yaning Yang

Xiao Du, Yutong Ye, Pengyu Zhang et al.

Learning to collaborate has witnessed significant progress in multi-agent reinforcement learning (MARL). However, promoting coordination among agents and enhancing exploration capabilities remain challenges. In multi-agent environments, interactions between agents are limited in specific situations. Effective collaboration between agents thus requires a nuanced understanding of when and how agents' actions influence others. To this end, in this paper, we propose a novel MARL algorithm named Situation-Dependent Causal Influence-Based Cooperative Multi-agent Reinforcement Learning (SCIC), which incorporates a novel Intrinsic reward mechanism based on a new cooperation criterion measured by situation-dependent causal influence among agents. Our approach aims to detect inter-agent causal influences in specific situations based on the criterion using causal intervention and conditional mutual information. This effectively assists agents in exploring states that can positively impact other agents, thus promoting cooperation between agents. The resulting update links coordinated exploration and intrinsic reward distribution, which enhance overall collaboration and performance. Experimental results on various MARL benchmarks demonstrate the superiority of our method compared to state-of-the-art approaches.

Jiawei Wang, Ming Lei, Yaning Yang et al.

Identifying species in biology among tens of thousands of visually similar taxa while discovering unknown species in open-world environments remains a fundamental challenge in biodiversity research. Current methods treat identification and discovery as separate problems, with classification models assuming closed sets and discovery relying on threshold-based rejection. Here we present DeepTaxon, a retrieval-augmented multimodal framework that unifies species identification and discovery through interpretable reasoning over retrieved visual evidence. Given a query image, DeepTaxon retrieves the top-$k$ candidate species with $n$ exemplar images each from a retrieval index and performs chain-of-thought comparative reasoning. Critically, we redefine discovery as an explicit, retrieval-based decision problem rather than an implicit parametric memory problem. A sample is novel if and only if the retrieval index lacks sufficient evidence for identification, so each retrieval naturally yields a classification or discovery label without manual annotation, thereby providing automatic supervision for both tasks. We train the framework via supervised fine-tuning on synthetic retrieval-augmented data, followed by reinforcement learning on hard samples, converting high-recall retrieval into high-precision decisions that scale to massive taxonomic vocabularies. Extensive experiments on a large-scale in-distribution benchmark and six out-of-distribution datasets demonstrate consistent improvements in both identification and discovery. Ablation studies further reveal effective test-time scaling with candidate count $k$ and exemplar count $n$, strong zero-shot transfer to unseen domains, and consistent performance across retrieval encoders, establishing an interpretable solution for biodiversity research.

Liangrui Pan, xiaoyu Li, Guang Zhu et al.

Spread through air spaces (STAS) constitutes a novel invasive pattern in lung adenocarcinoma (LUAD), associated with tumor recurrence and diminished survival rates. However, large-scale STAS diagnosis in LUAD remains a labor-intensive endeavor, compounded by the propensity for oversight and misdiagnosis due to its distinctive pathological characteristics and morphological features. Consequently, there is a pressing clinical imperative to leverage deep learning models for STAS diagnosis. This study initially assembled histopathological images from STAS patients at the Second Xiangya Hospital and the Third Xiangya Hospital of Central South University, alongside the TCGA-LUAD cohort. Three senior pathologists conducted cross-verification annotations to construct the STAS-SXY, STAS-TXY, and STAS-TCGA datasets. We then propose a multi-pattern attention-aware multiple instance learning framework, named STAMP, to analyze and diagnose the presence of STAS across multi-center histopathology images. Specifically, the dual-branch architecture guides the model to learn STAS-associated pathological features from distinct semantic spaces. Transformer-based instance encoding and a multi-pattern attention aggregation modules dynamically selects regions closely associated with STAS pathology, suppressing irrelevant noise and enhancing the discriminative power of global representations. Moreover, a similarity regularization constraint prevents feature redundancy across branches, thereby improving overall diagnostic accuracy. Extensive experiments demonstrated that STAMP achieved competitive diagnostic results on STAS-SXY, STAS-TXY and STAS-TCGA, with AUCs of 0.8058, 0.8017, and 0.7928, respectively, surpassing the clinical level.

Xiaoqi Wang, Yingjie Cheng, Yaning Yang et al.

Self-supervised representation learning (SSL) on biomedical networks provides new opportunities for drug discovery. However, how to effectively combine multiple SSL models is still challenging and has been rarely explored. Therefore, we propose multi-task joint strategies of self-supervised representation learning on biomedical networks for drug discovery, named MSSL2drug. We design six basic SSL tasks inspired by various modality features including structures, semantics, and attributes in heterogeneous biomedical networks. Importantly, fifteen combinations of multiple tasks are evaluated by a graph attention-based multi-task adversarial learning framework in two drug discovery scenarios. The results suggest two important findings. (1) Combinations of multimodal tasks achieve the best performance compared to other multi-task joint models. (2) The local-global combination models yield higher performance than random two-task combinations when there are the same size of modalities. Therefore, we conjecture that the multimodal and local-global combination strategies can be treated as the guideline of multi-task SSL for drug discovery.