Yupeng Qin

h-index7
2papers

2 Papers

27.2LGApr 7
MO-RiskVAE: A Multi-Omics Variational Autoencoder for Survival Risk Modeling in Multiple MyelomaMO-RiskVAE

Zixuan Chen, Heng Zhang, YuPeng Qin et al.

Multimodal variational autoencoders (VAEs) have emerged as a powerful framework for survival risk modeling in multiple myeloma by integrating heterogeneous omics and clinical data. However, when trained under survival supervision, standard latent regularization strategies often fail to preserve prognostically relevant variation, leading to unstable or overly constrained representations. Despite numerous proposed variants, it remains unclear which aspects of latent design fundamentally govern performance in this setting. In this work, we conduct a controlled investigation of latent modeling choices for multimodal survival prediction within a unified extension of the MyeVAE framework. By systematically isolating regularization scale, posterior geometry, and latent space structure under identical architectures and optimization protocols, we show that survival-driven training is primarily sensitive to the magnitude and structure of latent regularization rather than the specific divergence formulation. In particular, moderate relaxation of KL regularization consistently improves survival discrimination, while alternative divergence mechanisms such as MMD and HSIC provide limited benefit without appropriate scaling. We further demonstrate that structuring the latent space can improve alignment between learned representations and survival risk gradients. A hybrid continuous--discrete formulation based on Gumbel--Softmax enhances global risk ordering in the continuous latent subspace, even though stable discrete subtype discovery does not emerge under survival supervision. Guided by these findings, we instantiate a robust multimodal survival model, termed MO-RiskVAE, which consistently improves risk stratification over the original MyeVAE without introducing additional supervision or complex training heuristics.

CRAug 14, 2025
MCP-Guard: A Defense Framework for Model Context Protocol Integrity in Large Language Model Applications

Wenpeng Xing, Zhonghao Qi, Yupeng Qin et al.

The integration of Large Language Models (LLMs) with external tools via protocols such as the Model Context Protocol (MCP) introduces critical security vulnerabilities, including prompt injection, data exfiltration, and other threats. To counter these challenges, we propose MCP-Guard, a robust, layered defense architecture designed for LLM--tool interactions. MCP-Guard employs a three-stage detection pipeline that balances efficiency with accuracy: it progresses from lightweight static scanning for overt threats and a deep neural detector for semantic attacks, to our fine-tuned E5-based model achieves (96.01) accuracy in identifying adversarial prompts. Finally, a lightweight LLM arbitrator synthesizes these signals to deliver the final decision while minimizing false positives. To facilitate rigorous training and evaluation, we also introduce MCP-AttackBench, a comprehensive benchmark of over 70,000 samples. Sourced from public datasets and augmented by GPT-4, MCP-AttackBench simulates diverse, real-world attack vectors in the MCP format, providing a foundation for future research into securing LLM-tool ecosystems.