CLJul 10, 2024
Automatic Extraction of Disease Risk Factors from Medical PublicationsMaxim Rubchinsky, Ella Rabinovich, Adi Shraibman et al.
We present a novel approach to automating the identification of risk factors for diseases from medical literature, leveraging pre-trained models in the bio-medical domain, while tuning them for the specific task. Faced with the challenges of the diverse and unstructured nature of medical articles, our study introduces a multi-step system to first identify relevant articles, then classify them based on the presence of risk factor discussions and, finally, extract specific risk factor information for a disease through a question-answering model. Our contributions include the development of a comprehensive pipeline for the automated extraction of risk factors and the compilation of several datasets, which can serve as valuable resources for further research in this area. These datasets encompass a wide range of diseases, as well as their associated risk factors, meticulously identified and validated through a fine-grained evaluation scheme. We conducted both automatic and thorough manual evaluation, demonstrating encouraging results. We also highlight the importance of improving models and expanding dataset comprehensiveness to keep pace with the rapidly evolving field of medical research.
CCFeb 26
Spiky Rank and Its Applications to Rigidity and CircuitsLianna Hambardzumyan, Konstantin Myasnikov, Artur Riazanov et al.
We introduce spiky rank, a new matrix parameter that enhances blocky rank by combining the combinatorial structure of the latter with linear-algebraic flexibility. A spiky matrix is block-structured with diagonal blocks that are arbitrary rank-one matrices, and the spiky rank of a matrix is the minimum number of such matrices required to express it as a sum. This measure extends blocky rank to real matrices and is more robust for problems with both combinatorial and algebraic character. Our conceptual contribution is as follows: we propose spiky rank as a well-behaved candidate matrix complexity measure and demonstrate its potential through applications. We show that large spiky rank implies high matrix rigidity, and that spiky rank lower bounds yield lower bounds for depth-2 ReLU circuits, the basic building blocks of neural networks. On the technical side, we establish tight bounds for random matrices and develop a framework for explicit lower bounds, applying it to Hamming distance matrices and spectral expanders. Finally, we relate spiky rank to other matrix parameters, including blocky rank, sparsity, and the $γ_2$-norm.