Rene Bidart

Xin Huang, Ashish Khetan, Rene Bidart et al.

Transformer-based language models such as BERT have achieved the state-of-the-art performance on various NLP tasks, but are computationally prohibitive. A recent line of works use various heuristics to successively shorten sequence length while transforming tokens through encoders, in tasks such as classification and ranking that require a single token embedding for prediction. We present a novel solution to this problem, called Pyramid-BERT where we replace previously used heuristics with a {\em core-set} based token selection method justified by theoretical results. The core-set based token selection technique allows us to avoid expensive pre-training, gives a space-efficient fine tuning, and thus makes it suitable to handle longer sequence lengths. We provide extensive experiments establishing advantages of pyramid BERT over several baselines and existing works on the GLUE benchmarks and Long Range Arena datasets.

Zilong Zhong, Zhong Qiu Lin, Rene Bidart et al.

The recent integration of attention mechanisms into segmentation networks improves their representational capabilities through a great emphasis on more informative features. However, these attention mechanisms ignore an implicit sub-task of semantic segmentation and are constrained by the grid structure of convolution kernels. In this paper, we propose a novel squeeze-and-attention network (SANet) architecture that leverages an effective squeeze-and-attention (SA) module to account for two distinctive characteristics of segmentation: i) pixel-group attention, and ii) pixel-wise prediction. Specifically, the proposed SA modules impose pixel-group attention on conventional convolution by introducing an 'attention' convolutional channel, thus taking into account spatial-channel inter-dependencies in an efficient manner. The final segmentation results are produced by merging outputs from four hierarchical stages of a SANet to integrate multi-scale contexts for obtaining an enhanced pixel-wise prediction. Empirical experiments on two challenging public datasets validate the effectiveness of the proposed SANets, which achieves 83.2% mIoU (without COCO pre-training) on PASCAL VOC and a state-of-the-art mIoU of 54.4% on PASCAL Context.

Rene Bidart, Alexander Wong

In this study, we propose the Affine Variational Autoencoder (AVAE), a variant of Variational Autoencoder (VAE) designed to improve robustness by overcoming the inability of VAEs to generalize to distributional shifts in the form of affine perturbations. By optimizing an affine transform to maximize ELBO, the proposed AVAE transforms an input to the training distribution without the need to increase model complexity to model the full distribution of affine transforms. In addition, we introduce a training procedure to create an efficient model by learning a subset of the training distribution, and using the AVAE to improve generalization and robustness to distributional shift at test time. Experiments on affine perturbations demonstrate that the proposed AVAE significantly improves generalization and robustness to distributional shift in the form of affine perturbations without an increase in model complexity.

Rene Bidart, Alexander Wong

While microscopic analysis of histopathological slides is generally considered as the gold standard method for performing cancer diagnosis and grading, the current method for analysis is extremely time consuming and labour intensive as it requires pathologists to visually inspect tissue samples in a detailed fashion for the presence of cancer. As such, there has been significant recent interest in computer aided diagnosis systems for analysing histopathological slides for cancer grading to aid pathologists to perform cancer diagnosis and grading in a more efficient, accurate, and consistent manner. In this work, we investigate and explore a deep triple-stream residual network (TriResNet) architecture for the purpose of tile-level histopathology grading, which is the critical first step to computer-aided whole-slide histopathology grading. In particular, the design mentality behind the proposed TriResNet network architecture is to facilitate for the learning of a more diverse set of quantitative features to better characterize the complex tissue characteristics found in histopathology samples. Experimental results on two widely-used computer-aided histopathology benchmark datasets (CAMELYON16 dataset and Invasive Ductal Carcinoma (IDC) dataset) demonstrated that the proposed TriResNet network architecture was able to achieve noticeably improved accuracies when compared with two other state-of-the-art deep convolutional neural network architectures. Based on these promising results, the hope is that the proposed TriResNet network architecture could become a useful tool to aiding pathologists increase the consistency, speed, and accuracy of the histopathology grading process.